Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20nelsoni_20[genbank_20GCA_5F001447455.1_202015-11-24]
2,969 sequences; 47,436,005 total letters
Query= NC_014637.1
Length=617453
Score E
Sequences producing significant alignments: (Bits) Value
seq2516 150 7e-31
seq2371 131 7e-25
seq2465 120 1e-21
seq827 118 4e-21
seq1187 113 2e-19
seq11 100 1e-15
seq378 95.1 5e-14
>seq2516
Length=768920
Score = 150 bits (166), Expect = 7e-31
Identities = 282/411 (69%), Gaps = 5/411 (1%)
Strand=Plus/Minus
Query 451205 ATTCAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATG 451264
|||||||| | || ||||| || | || | ||| | || |||||||| |||||
Sbjct 551491 ATTCAAGTCGAATACAAAGGCGAGTCGAAGTCATTTACACCCGAAGAAATCAGTGCTATG 551432
Query 451265 GTTCTTACTAAA-ATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGC 451323
|| ||| | || ||||| ||||| || ||| ||| | || | |||| |||||
Sbjct 551431 GTG-TTAGTGAAGATGAAGGAAACTGCCGAAGCTTATTTGGGAAAAACTGTTAAGGATGC 551373
Query 451324 AGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGG 451383
|||||||||||||| || ||||| || ||| | || || || || || ||||| || ||
Sbjct 551372 CGTAATTACTGTTCCGGCATATTTTAACGATTCTCAGCGTCAGGCGACCAAAGACGCTGG 551313
Query 451384 ACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGC 451443
| ||| ||||||| |||||| | || || || || ||||| ||||| ||||| | ||
Sbjct 551312 AACGATTTCTGGTTTGAATGTTTTGCGTATCATCAACGAACCAACAGCGGCTGCAATTGC 551253
Query 451444 ATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGG 451503
|||||||| | | ||| | | ||| |||| || | ||||||| ||||
Sbjct 551252 TTATGGACTTG---ATAGAAAGGGTGGCGGTGAACGAAATGTTCTGATATTTGACCTTGG 551196
Query 451504 TGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGC 451563
||| || ||| |||| ||| | | | || |||||||| | ||||| || ||| |
Sbjct 551195 TGGTGGTACTTTTGATGTGTCTATTTTGACCATCGAAGATGGCATTTTTGAGGTCAAGTC 551136
Query 451564 AACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAATGCAATTGT 451614
||| |||||| |||||| | || ||||| || | || ||| ||| ||
Sbjct 551135 TACCGCTGGTGACACTCATTTGGGTGGTGAGGACTTCGACAATCGAATGGT 551085
>seq2371
Length=372962
Score = 131 bits (144), Expect = 7e-25
Identities = 161/220 (73%), Gaps = 0/220 (0%)
Strand=Plus/Plus
Query 451206 TTCAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGG 451265
||||| | | | ||| ||||||| ||| || |||| |||||||||||| | ||||
Sbjct 121187 TTCAACTTACTGTTAACGGTGAAAAGAAATTGTTCACTCCCGAAGAAATTTCAGCGATGG 121246
Query 451266 TTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAG 451325
|| | ||||||||||||| || ||| ||| | || ||| | |||| |
Sbjct 121247 TTTTGTTGAAAATGAAAGAAATTGCCGAAGCTTATTTGGGCAAAGAAGTGAAAAATGCCG 121306
Query 451326 TAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGAC 451385
| | || ||||||||||||||||| ||||||||||| ||||| || |||||||| ||
Sbjct 121307 TCGTCACCGTTCCCGCTTATTTCAACGATGCACAACGTCAAGCTACCAAAGATGCGGGCA 121366
Query 451386 ATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACC 451425
||||||||| | |||||| ||||||| || || |||||
Sbjct 121367 CCATTGCTGGTCTTAATGTTGTTCGAATCATCAACGAACC 121406
>seq2465
Length=325902
Score = 120 bits (132), Expect = 1e-21
Identities = 114/146 (78%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 391047 ATAATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCA 391106
|| ||| | || ||||| || ||||| ||||| |||||||| || || || |||||| ||
Sbjct 18023 ATTATGCAGATATTCGTGAAGACACTTACTGGAAAAACTATAACACTAGAAGTTGAACCA 17964
Query 391107 TCTGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGAT 391166
|| || | ||| ||| | ||||| |||||||| ||||||||||| ||||||||||||
Sbjct 17963 TCAGACACCATCGAAAATGTTAAAAGTAAAATTCAGGATAAGGAAGGCATTCCTCCTGAT 17904
Query 391167 CAACAACGTTTAATTTTCTCAGGGAA 391192
|| ||| | ||||| || |||| ||
Sbjct 17903 CAGCAAAGATTAATCTTTGCAGGTAA 17878
Score = 102 bits (112), Expect = 3e-16
Identities = 103/134 (77%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109
||| | ||||| || |||||| | ||||| ||||| || || | || || || |||||
Sbjct 17342 ATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATCT 17283
Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169
|||| |||||| | | ||| |||||||||||||||||||| ||||| ||||||||
Sbjct 17282 GATACGATTGAAAATGTGAAAAGTAAAATTCAAGATAAGGAAGGCATTCCGCCTGATCAG 17223
Query 391170 CAACGTTTAATTTT 391183
||||| || || ||
Sbjct 17222 CAACGATTGATATT 17209
>seq827
Length=57960
Score = 118 bits (130), Expect = 4e-21
Identities = 107/135 (79%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108
|||| | ||||||||||| || || ||||| ||||| || ||| | || || ||| ||||
Sbjct 30920 AATGCAAATTTTCGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATC 30861
Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168
||||| || ||| | | ||| |||||||||||||| || |||||||| || |||||
Sbjct 30860 TGATACAATAGAAAATGTGAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCGGATCA 30801
Query 391169 ACAACGTTTAATTTT 391183
||||||||| |||||
Sbjct 30800 ACAACGTTTGATTTT 30786
Score = 113 bits (124), Expect = 2e-19
Identities = 106/135 (79%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108
|||| | ||||||||||| || || ||||| ||||| || ||| | || || ||| |||
Sbjct 30356 AATGCAAATTTTCGTTAAGACTCTTACTGGAAAAACAATAACTTTGGAAGTAGAACTATC 30297
Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168
||||| || ||| | | ||| |||||||||||||| || |||||||| || |||||
Sbjct 30296 TGATACAATAGAAAATGTGAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCGGATCA 30237
Query 391169 ACAACGTTTAATTTT 391183
||||||||| |||||
Sbjct 30236 ACAACGTTTGATTTT 30222
Score = 113 bits (124), Expect = 2e-19
Identities = 106/135 (79%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108
|||| | ||||||||||| || || ||||| ||||| || ||| | || || ||| |||
Sbjct 30638 AATGCAAATTTTCGTTAAGACTCTTACTGGAAAAACAATAACTTTGGAAGTAGAACTATC 30579
Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168
||||| || ||| | | ||| |||||||||||||| || |||||||| || |||||
Sbjct 30578 TGATACAATAGAAAATGTGAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCGGATCA 30519
Query 391169 ACAACGTTTAATTTT 391183
||||||||| |||||
Sbjct 30518 ACAACGTTTGATTTT 30504
Score = 100 bits (110), Expect = 1e-15
Identities = 103/135 (76%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108
|||| | ||||| ||||| || || ||||| ||||| || || | || || ||| ||||
Sbjct 55632 AATGCAAATTTTTGTTAAGACCCTCACTGGCAAAACCATCACATTGGAAGTGGAACCATC 55573
Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168
||||| |||||| | | ||| ||||| || ||||| ||||||||||| || |||||
Sbjct 55572 TGATACAATTGAAAATGTGAAAGGGAAAATACAGGATAAAGAAGGAATTCCACCAGATCA 55513
Query 391169 ACAACGTTTAATTTT 391183
|||||||| || ||
Sbjct 55512 GCAACGTTTGATATT 55498
Score = 95.1 bits (104), Expect = 5e-14
Identities = 102/135 (76%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108
|||| | ||||| ||||| || || ||||| || || || || | || || ||| ||||
Sbjct 29769 AATGCAAATTTTTGTTAAGACCCTAACTGGGAAGACCATCACGTTGGAAGTGGAACCATC 29710
Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168
||||| |||| | | ||| || |||||||||||||| ||||||||||| |||||
Sbjct 29709 TGATACTGTTGAGAATGTGAAAGGGAAGATTCAAGATAAGGAGGGAATTCCTCCAGATCA 29650
Query 391169 ACAACGTTTAATTTT 391183
||| ||| | |||||
Sbjct 29649 ACAGCGTCTGATTTT 29635
>seq1187
Length=25466
Score = 113 bits (124), Expect = 2e-19
Identities = 106/135 (79%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108
|||| | ||||| ||||| || || ||||| ||||| || || | || || ||| ||||
Sbjct 21699 AATGCAAATTTTTGTTAAGACCCTCACTGGCAAAACCATCACATTGGAAGTGGAACCATC 21758
Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168
||||| |||||| | | ||| ||||| || ||||||||||||||||| || |||||
Sbjct 21759 TGATACAATTGAAAATGTGAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCA 21818
Query 391169 ACAACGTTTAATTTT 391183
||||||||| |||||
Sbjct 21819 ACAACGTTTGATTTT 21833
Score = 100 bits (110), Expect = 1e-15
Identities = 103/135 (76%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108
|||| | ||||| ||||| || || ||||| ||||| || || | || || ||| ||||
Sbjct 20850 AATGCAAATTTTTGTTAAGACCCTCACTGGCAAAACCATCACATTGGAAGTGGAACCATC 20909
Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168
||||| |||||| | | ||| ||||| || ||||| ||||||||||| || |||||
Sbjct 20910 TGATACAATTGAAAATGTGAAAGGGAAAATACAGGATAAAGAAGGAATTCCACCAGATCA 20969
Query 391169 ACAACGTTTAATTTT 391183
|||||| | |||||
Sbjct 20970 GCAACGTCTGATTTT 20984
Score = 100 bits (110), Expect = 1e-15
Identities = 103/135 (76%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108
|||| | ||||| ||||| || || ||||| ||||| || || | || || ||| ||||
Sbjct 21133 AATGCAAATTTTTGTTAAGACCCTCACTGGCAAAACCATCACATTGGAAGTGGAACCATC 21192
Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168
||||| |||||| | | ||| ||||| || ||||| ||||||||||| || |||||
Sbjct 21193 TGATACAATTGAAAATGTGAAAGGGAAAATACAGGATAAAGAAGGAATTCCACCAGATCA 21252
Query 391169 ACAACGTTTAATTTT 391183
|||||| | |||||
Sbjct 21253 GCAACGTCTGATTTT 21267
Score = 100 bits (110), Expect = 1e-15
Identities = 103/135 (76%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108
|||| | ||||| ||||| || || ||||| ||||| || || | || || ||| ||||
Sbjct 21416 AATGCAAATTTTTGTTAAGACCCTCACTGGCAAAACCATCACATTGGAAGTGGAACCATC 21475
Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168
||||| |||||| | | ||| ||||| || ||||| ||||||||||| || |||||
Sbjct 21476 TGATACAATTGAAAATGTGAAAGGGAAAATACAGGATAAAGAAGGAATTCCACCAGATCA 21535
Query 391169 ACAACGTTTAATTTT 391183
|||||| | |||||
Sbjct 21536 GCAACGTCTGATTTT 21550
Score = 100 bits (110), Expect = 1e-15
Identities = 103/135 (76%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108
|||| | ||||||||||| || || ||||| ||||| || || | || || ||| ||||
Sbjct 21984 AATGCAAATTTTCGTTAAGACTCTTACTGGAAAAACAATAACATTGGAAGTAGAACCATC 22043
Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168
||||| || || | | ||| ||||| || ||||||||||||||||| || |||||
Sbjct 22044 TGATACAATAGAGAATGTAAAAGGCAAAATACAGGATAAGGAAGGAATTCCACCAGATCA 22103
Query 391169 ACAACGTTTAATTTT 391183
|||||| | |||||
Sbjct 22104 GCAACGTCTGATTTT 22118
Score = 100 bits (110), Expect = 1e-15
Identities = 103/135 (76%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108
|||| | ||||| ||||| || || ||||| ||||| || || | || || ||| ||||
Sbjct 22267 AATGCAAATTTTTGTTAAGACCCTCACTGGCAAAACCATCACATTGGAAGTGGAACCATC 22326
Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168
||||| |||||| | | ||| ||||| || ||||| ||||||||||| || |||||
Sbjct 22327 TGATACAATTGAAAATGTGAAAGGGAAAATACAGGATAAAGAAGGAATTCCACCAGATCA 22386
Query 391169 ACAACGTTTAATTTT 391183
|||||||| || ||
Sbjct 22387 GCAACGTTTGATATT 22401
Score = 95.1 bits (104), Expect = 5e-14
Identities = 102/135 (76%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108
|||| | || || || ||||| |||||||| ||||| ||||| || || || || | ||
Sbjct 20236 AATGCAGATATTTGTCAAAACTCTGACTGGGAAAACCATTACACTGGAAGTGGAGCCCTC 20295
Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168
|| | ||||||| | | || |||||||| ||||| || |||||||| || |||||
Sbjct 20296 AGACACCATTGAAAATGTGAAGGGTAAAATTCAGGATAAAGAGGGAATTCCACCCGATCA 20355
Query 391169 ACAACGTTTAATTTT 391183
||||||| | |||||
Sbjct 20356 ACAACGTCTGATTTT 20370
>seq11
Length=460
Score = 100 bits (110), Expect = 1e-15
Identities = 103/135 (76%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108
|||| | ||||||||||| || || || || ||||| || || | || || ||| ||||
Sbjct 59 AATGCAAATTTTCGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATC 118
Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168
||||| || || | | ||| ||||| || ||||||||||||||||| || |||||
Sbjct 119 TGATACAATAGAGAATGTAAAAGGCAAAATACAGGATAAGGAAGGAATTCCACCGGATCA 178
Query 391169 ACAACGTTTAATTTT 391183
||||||||| || ||
Sbjct 179 ACAACGTTTGATATT 193
>seq378
Length=398
Score = 95.1 bits (104), Expect = 5e-14
Identities = 102/135 (76%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108
|||| | ||||||||||| || || || || ||||| || || | || || ||| ||||
Sbjct 114 AATGCAAATTTTCGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATC 173
Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168
||||| || || | | ||| ||||| || ||||||||||||||||| || |||||
Sbjct 174 TGATACAATAGAGAATGTAAAAGGCAAAATACAGGATAAGGAAGGAATTCCACCAGATCA 233
Query 391169 ACAACGTTTAATTTT 391183
|||||||| || ||
Sbjct 234 GCAACGTTTGATATT 248
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1975643243054652
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |