Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20nelsoni_20[genbank_20GCA_5F001447455.1_202015-11-24] 2,969 sequences; 47,436,005 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq2516 150 7e-31 seq2371 131 7e-25 seq2465 120 1e-21 seq827 118 4e-21 seq1187 113 2e-19 seq11 100 1e-15 seq378 95.1 5e-14 >seq2516 Length=768920 Score = 150 bits (166), Expect = 7e-31 Identities = 282/411 (69%), Gaps = 5/411 (1%) Strand=Plus/Minus Query 451205 ATTCAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATG 451264 |||||||| | || ||||| || | || | ||| | || |||||||| ||||| Sbjct 551491 ATTCAAGTCGAATACAAAGGCGAGTCGAAGTCATTTACACCCGAAGAAATCAGTGCTATG 551432 Query 451265 GTTCTTACTAAA-ATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGC 451323 || ||| | || ||||| ||||| || ||| ||| | || | |||| ||||| Sbjct 551431 GTG-TTAGTGAAGATGAAGGAAACTGCCGAAGCTTATTTGGGAAAAACTGTTAAGGATGC 551373 Query 451324 AGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGG 451383 |||||||||||||| || ||||| || ||| | || || || || || ||||| || || Sbjct 551372 CGTAATTACTGTTCCGGCATATTTTAACGATTCTCAGCGTCAGGCGACCAAAGACGCTGG 551313 Query 451384 ACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGC 451443 | ||| ||||||| |||||| | || || || || ||||| ||||| ||||| | || Sbjct 551312 AACGATTTCTGGTTTGAATGTTTTGCGTATCATCAACGAACCAACAGCGGCTGCAATTGC 551253 Query 451444 ATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGG 451503 |||||||| | | ||| | | ||| |||| || | ||||||| |||| Sbjct 551252 TTATGGACTTG---ATAGAAAGGGTGGCGGTGAACGAAATGTTCTGATATTTGACCTTGG 551196 Query 451504 TGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGC 451563 ||| || ||| |||| ||| | | | || |||||||| | ||||| || ||| | Sbjct 551195 TGGTGGTACTTTTGATGTGTCTATTTTGACCATCGAAGATGGCATTTTTGAGGTCAAGTC 551136 Query 451564 AACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAATGCAATTGT 451614 ||| |||||| |||||| | || ||||| || | || ||| ||| || Sbjct 551135 TACCGCTGGTGACACTCATTTGGGTGGTGAGGACTTCGACAATCGAATGGT 551085 >seq2371 Length=372962 Score = 131 bits (144), Expect = 7e-25 Identities = 161/220 (73%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 451206 TTCAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGG 451265 ||||| | | | ||| ||||||| ||| || |||| |||||||||||| | |||| Sbjct 121187 TTCAACTTACTGTTAACGGTGAAAAGAAATTGTTCACTCCCGAAGAAATTTCAGCGATGG 121246 Query 451266 TTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAG 451325 || | ||||||||||||| || ||| ||| | || ||| | |||| | Sbjct 121247 TTTTGTTGAAAATGAAAGAAATTGCCGAAGCTTATTTGGGCAAAGAAGTGAAAAATGCCG 121306 Query 451326 TAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGAC 451385 | | || ||||||||||||||||| ||||||||||| ||||| || |||||||| || Sbjct 121307 TCGTCACCGTTCCCGCTTATTTCAACGATGCACAACGTCAAGCTACCAAAGATGCGGGCA 121366 Query 451386 ATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACC 451425 ||||||||| | |||||| ||||||| || || ||||| Sbjct 121367 CCATTGCTGGTCTTAATGTTGTTCGAATCATCAACGAACC 121406 >seq2465 Length=325902 Score = 120 bits (132), Expect = 1e-21 Identities = 114/146 (78%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 391047 ATAATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCA 391106 || ||| | || ||||| || ||||| ||||| |||||||| || || || |||||| || Sbjct 18023 ATTATGCAGATATTCGTGAAGACACTTACTGGAAAAACTATAACACTAGAAGTTGAACCA 17964 Query 391107 TCTGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGAT 391166 || || | ||| ||| | ||||| |||||||| ||||||||||| |||||||||||| Sbjct 17963 TCAGACACCATCGAAAATGTTAAAAGTAAAATTCAGGATAAGGAAGGCATTCCTCCTGAT 17904 Query 391167 CAACAACGTTTAATTTTCTCAGGGAA 391192 || ||| | ||||| || |||| || Sbjct 17903 CAGCAAAGATTAATCTTTGCAGGTAA 17878 Score = 102 bits (112), Expect = 3e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | ||||| || |||||| | ||||| ||||| || || | || || || ||||| Sbjct 17342 ATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATCT 17283 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| |||||| | | ||| |||||||||||||||||||| ||||| |||||||| Sbjct 17282 GATACGATTGAAAATGTGAAAAGTAAAATTCAAGATAAGGAAGGCATTCCGCCTGATCAG 17223 Query 391170 CAACGTTTAATTTT 391183 ||||| || || || Sbjct 17222 CAACGATTGATATT 17209 >seq827 Length=57960 Score = 118 bits (130), Expect = 4e-21 Identities = 107/135 (79%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | ||||||||||| || || ||||| ||||| || ||| | || || ||| |||| Sbjct 30920 AATGCAAATTTTCGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATC 30861 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 ||||| || ||| | | ||| |||||||||||||| || |||||||| || ||||| Sbjct 30860 TGATACAATAGAAAATGTGAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCGGATCA 30801 Query 391169 ACAACGTTTAATTTT 391183 ||||||||| ||||| Sbjct 30800 ACAACGTTTGATTTT 30786 Score = 113 bits (124), Expect = 2e-19 Identities = 106/135 (79%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | ||||||||||| || || ||||| ||||| || ||| | || || ||| ||| Sbjct 30356 AATGCAAATTTTCGTTAAGACTCTTACTGGAAAAACAATAACTTTGGAAGTAGAACTATC 30297 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 ||||| || ||| | | ||| |||||||||||||| || |||||||| || ||||| Sbjct 30296 TGATACAATAGAAAATGTGAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCGGATCA 30237 Query 391169 ACAACGTTTAATTTT 391183 ||||||||| ||||| Sbjct 30236 ACAACGTTTGATTTT 30222 Score = 113 bits (124), Expect = 2e-19 Identities = 106/135 (79%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | ||||||||||| || || ||||| ||||| || ||| | || || ||| ||| Sbjct 30638 AATGCAAATTTTCGTTAAGACTCTTACTGGAAAAACAATAACTTTGGAAGTAGAACTATC 30579 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 ||||| || ||| | | ||| |||||||||||||| || |||||||| || ||||| Sbjct 30578 TGATACAATAGAAAATGTGAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCGGATCA 30519 Query 391169 ACAACGTTTAATTTT 391183 ||||||||| ||||| Sbjct 30518 ACAACGTTTGATTTT 30504 Score = 100 bits (110), Expect = 1e-15 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | ||||| ||||| || || ||||| ||||| || || | || || ||| |||| Sbjct 55632 AATGCAAATTTTTGTTAAGACCCTCACTGGCAAAACCATCACATTGGAAGTGGAACCATC 55573 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 ||||| |||||| | | ||| ||||| || ||||| ||||||||||| || ||||| Sbjct 55572 TGATACAATTGAAAATGTGAAAGGGAAAATACAGGATAAAGAAGGAATTCCACCAGATCA 55513 Query 391169 ACAACGTTTAATTTT 391183 |||||||| || || Sbjct 55512 GCAACGTTTGATATT 55498 Score = 95.1 bits (104), Expect = 5e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | ||||| ||||| || || ||||| || || || || | || || ||| |||| Sbjct 29769 AATGCAAATTTTTGTTAAGACCCTAACTGGGAAGACCATCACGTTGGAAGTGGAACCATC 29710 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 ||||| |||| | | ||| || |||||||||||||| ||||||||||| ||||| Sbjct 29709 TGATACTGTTGAGAATGTGAAAGGGAAGATTCAAGATAAGGAGGGAATTCCTCCAGATCA 29650 Query 391169 ACAACGTTTAATTTT 391183 ||| ||| | ||||| Sbjct 29649 ACAGCGTCTGATTTT 29635 >seq1187 Length=25466 Score = 113 bits (124), Expect = 2e-19 Identities = 106/135 (79%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | ||||| ||||| || || ||||| ||||| || || | || || ||| |||| Sbjct 21699 AATGCAAATTTTTGTTAAGACCCTCACTGGCAAAACCATCACATTGGAAGTGGAACCATC 21758 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 ||||| |||||| | | ||| ||||| || ||||||||||||||||| || ||||| Sbjct 21759 TGATACAATTGAAAATGTGAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCA 21818 Query 391169 ACAACGTTTAATTTT 391183 ||||||||| ||||| Sbjct 21819 ACAACGTTTGATTTT 21833 Score = 100 bits (110), Expect = 1e-15 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | ||||| ||||| || || ||||| ||||| || || | || || ||| |||| Sbjct 20850 AATGCAAATTTTTGTTAAGACCCTCACTGGCAAAACCATCACATTGGAAGTGGAACCATC 20909 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 ||||| |||||| | | ||| ||||| || ||||| ||||||||||| || ||||| Sbjct 20910 TGATACAATTGAAAATGTGAAAGGGAAAATACAGGATAAAGAAGGAATTCCACCAGATCA 20969 Query 391169 ACAACGTTTAATTTT 391183 |||||| | ||||| Sbjct 20970 GCAACGTCTGATTTT 20984 Score = 100 bits (110), Expect = 1e-15 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | ||||| ||||| || || ||||| ||||| || || | || || ||| |||| Sbjct 21133 AATGCAAATTTTTGTTAAGACCCTCACTGGCAAAACCATCACATTGGAAGTGGAACCATC 21192 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 ||||| |||||| | | ||| ||||| || ||||| ||||||||||| || ||||| Sbjct 21193 TGATACAATTGAAAATGTGAAAGGGAAAATACAGGATAAAGAAGGAATTCCACCAGATCA 21252 Query 391169 ACAACGTTTAATTTT 391183 |||||| | ||||| Sbjct 21253 GCAACGTCTGATTTT 21267 Score = 100 bits (110), Expect = 1e-15 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | ||||| ||||| || || ||||| ||||| || || | || || ||| |||| Sbjct 21416 AATGCAAATTTTTGTTAAGACCCTCACTGGCAAAACCATCACATTGGAAGTGGAACCATC 21475 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 ||||| |||||| | | ||| ||||| || ||||| ||||||||||| || ||||| Sbjct 21476 TGATACAATTGAAAATGTGAAAGGGAAAATACAGGATAAAGAAGGAATTCCACCAGATCA 21535 Query 391169 ACAACGTTTAATTTT 391183 |||||| | ||||| Sbjct 21536 GCAACGTCTGATTTT 21550 Score = 100 bits (110), Expect = 1e-15 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | ||||||||||| || || ||||| ||||| || || | || || ||| |||| Sbjct 21984 AATGCAAATTTTCGTTAAGACTCTTACTGGAAAAACAATAACATTGGAAGTAGAACCATC 22043 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 ||||| || || | | ||| ||||| || ||||||||||||||||| || ||||| Sbjct 22044 TGATACAATAGAGAATGTAAAAGGCAAAATACAGGATAAGGAAGGAATTCCACCAGATCA 22103 Query 391169 ACAACGTTTAATTTT 391183 |||||| | ||||| Sbjct 22104 GCAACGTCTGATTTT 22118 Score = 100 bits (110), Expect = 1e-15 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | ||||| ||||| || || ||||| ||||| || || | || || ||| |||| Sbjct 22267 AATGCAAATTTTTGTTAAGACCCTCACTGGCAAAACCATCACATTGGAAGTGGAACCATC 22326 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 ||||| |||||| | | ||| ||||| || ||||| ||||||||||| || ||||| Sbjct 22327 TGATACAATTGAAAATGTGAAAGGGAAAATACAGGATAAAGAAGGAATTCCACCAGATCA 22386 Query 391169 ACAACGTTTAATTTT 391183 |||||||| || || Sbjct 22387 GCAACGTTTGATATT 22401 Score = 95.1 bits (104), Expect = 5e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | || || || ||||| |||||||| ||||| ||||| || || || || | || Sbjct 20236 AATGCAGATATTTGTCAAAACTCTGACTGGGAAAACCATTACACTGGAAGTGGAGCCCTC 20295 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 || | ||||||| | | || |||||||| ||||| || |||||||| || ||||| Sbjct 20296 AGACACCATTGAAAATGTGAAGGGTAAAATTCAGGATAAAGAGGGAATTCCACCCGATCA 20355 Query 391169 ACAACGTTTAATTTT 391183 ||||||| | ||||| Sbjct 20356 ACAACGTCTGATTTT 20370 >seq11 Length=460 Score = 100 bits (110), Expect = 1e-15 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | ||||||||||| || || || || ||||| || || | || || ||| |||| Sbjct 59 AATGCAAATTTTCGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATC 118 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 ||||| || || | | ||| ||||| || ||||||||||||||||| || ||||| Sbjct 119 TGATACAATAGAGAATGTAAAAGGCAAAATACAGGATAAGGAAGGAATTCCACCGGATCA 178 Query 391169 ACAACGTTTAATTTT 391183 ||||||||| || || Sbjct 179 ACAACGTTTGATATT 193 >seq378 Length=398 Score = 95.1 bits (104), Expect = 5e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | ||||||||||| || || || || ||||| || || | || || ||| |||| Sbjct 114 AATGCAAATTTTCGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATC 173 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 ||||| || || | | ||| ||||| || ||||||||||||||||| || ||||| Sbjct 174 TGATACAATAGAGAATGTAAAAGGCAAAATACAGGATAAGGAAGGAATTCCACCAGATCA 233 Query 391169 ACAACGTTTAATTTT 391183 |||||||| || || Sbjct 234 GCAACGTTTGATATT 248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975643243054652