Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20nelsoni_20[genbank_20GCA_5F001447455.1_202015-11-24]
2,969 sequences; 47,436,005 total letters
Query= NC_014649.1
Length=1181549
Score E
Sequences producing significant alignments: (Bits) Value
seq2516 331 7e-85
seq2371 141 7e-28
seq1837 100 2e-15
>seq2516
Length=768920
Score = 331 bits (366), Expect = 7e-85
Identities = 494/701 (70%), Gaps = 0/701 (0%)
Strand=Plus/Plus
Query 518013 TTACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTA 518072
|||| | ||||| || || || ||||| ||||| | ||| | || | |||| | |
Sbjct 551083 TTACCATTCGATTGTCGAAGTCCTCACCACCCAAATGAGTGTCACCAGCGGTAGACTTGA 551142
Query 518073 CTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATAT 518132
| | |||| |||||||| | | ||||| || |||||| || |||||||| | |
Sbjct 551143 CCTCAAAAATGCCATCTTCGATGGTCAAAATAGACACATCAAAAGTACCACCACCAAGGT 551202
Query 518133 CAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAG 518192
|||| || || ||||| ||| | | ||| ||||||| ||||| |||| ||||
Sbjct 551203 CAAATATCAGAACATTTCGTTCACCGCCACCCTTTCTATCAAGTCCATAAGCAATTGCAG 551262
Query 518193 CAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTT 518252
| || |||||||| || || || | ||||||||| | ||||| ||| |||| || ||||
Sbjct 551263 CCGCTGTTGGTTCGTTGATGATACGCAAAACATTCAAACCAGAAATCGTTCCAGCGTCTT 551322
Query 518253 TAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTA 518312
| || || || | || ||||||||||||||||| ||||||||||| |||||||| | |
Sbjct 551323 TGGTCGCCTGACGCTGAGAATCGTTAAAATATGCCGGAACAGTAATTACGGCATCCTTAA 551382
Query 518313 CTTCTTTACCAATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAA 518372
| ||| || | |||||| || |||| ||||| || ||| | ||| | |
Sbjct 551383 CAGTTTTTCCCAAATAAGCTTCGGCAGTTTCCTTCATCTTCACTAACACCATAGCACTGA 551442
Query 518373 TTTGTTCTGGGGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTAT 518432
||| ||| || | | || ||| || || || ||| |||| || | |||||
Sbjct 551443 TTTCTTCGGGTGTAAATGACTTCGACTCGCCTTTGTATTCGACTTGAATTTTAGGTTTCG 551502
Query 518433 TACCAACATTAATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCAT 518492
||| | || |||||||| |||||||| | ||||||||| || || || ||||
Sbjct 551503 ATCCATCGTTGATAACTTTGAATGGCCAATGTTTCATATCAGACTGCACCGCAGCATCAT 551562
Query 518493 TAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAG 518552
||| | ||| || | ||| || |||||||||| ||||| ||||| | |||
Sbjct 551563 CAAATCGACGACCGATGAGTCGCTTCGCATCAAAAACTGTATTATGAGGATTCAACGCAA 551622
Query 518553 CTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATG 518612
|||||| ||| || |||||||||||||| | || || || || || | |||||| ||
Sbjct 551623 CTTGATTTTTTGCCGCATCTCCAATCAGTCGCTCGGTATCGGTGAAAGCAACATAACTTG 551682
Query 518613 GAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACAC 518672
| || || ||||| |||||||| || |||||||||||||||||||||| || | || |
Sbjct 551683 GCGTGGTACGATTCCCTTGATCGTTGGCAATAATTTCAACTTTACCATGCTGGAACACGC 551742
Query 518673 CTACACAACTAAAAGTTGTTCCTAAATCAATACCAATAGCA 518713
| |||||||| | || || || |||||||| |||||||||
Sbjct 551743 CAACACAACTGTAGGTAGTACCCAAATCAATTCCAATAGCA 551783
Score = 109 bits (120), Expect = 4e-18
Identities = 195/282 (69%), Gaps = 2/282 (1%)
Strand=Plus/Plus
Query 517604 ATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCA 517663
||| | || ||||| ||||||||||| || ||||| | ||| || |||| ||| |||
Sbjct 550619 ATACCTGCTCCATAGGCAACAGCTTCGTCTGGATTGATGCTTTTGTTAAGTTCTTTCCCA 550678
Query 517664 TTGAAAAAAT-TTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAA 517722
|| ||||||| ||| || || || | || |||||||| |||| ||||| || || ||
Sbjct 550679 TTAAAAAAATCTTGCAACAACTTCT-GAACTTTAGGAATGCGAGTAGATCCACCCACCAA 550737
Query 517723 TACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGG 517782
|||| |||||| | | || ||| || | ||| | || | | ||||||| || ||
Sbjct 550738 AACAACTTCATGAATCACTGCTTTGTCTAATTTCGCGTCACGAAGAGCTTTTTCTACTGG 550797
Query 517783 TTCAAGACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGT 517842
||| | | | | |||||||| | | | |||||||| |||||| |||| |||
Sbjct 550798 TTCCAAAGTAGAACGGAACAAGTCAGCATTCAACTCTTCGAAGCGAGCTCTGGTAATAGT 550857
Query 517843 GACATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAAT 517884
| | ||||||| |||||| | | ||||| ||||||
Sbjct 550858 GGTGTAGAAATCAATGCCTTCGTAGAGGCTATCAATTTCAAT 550899
>seq2371
Length=372962
Score = 141 bits (156), Expect = 7e-28
Identities = 317/469 (68%), Gaps = 13/469 (3%)
Strand=Plus/Minus
Query 518201 GGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCT 518260
||||| || || |||| | |||||||||||||||||| | || |||||||| || |||
Sbjct 121406 GGTTCGTTGATGATTCGAACAACATTAAGACCAGCAATGGTGCCCGCATCTTTGGTAGCT 121347
Query 518261 TGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTA 518320
|| | ||||| |||||| ||||| || ||||| || | ||||||| | ||||||||
Sbjct 121346 TGACGTTGTGCATCGTTGAAATAAGCGGGAACGGTGACGACGGCATTTTTCACTTCTTTG 121287
Query 518321 CCAATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCT 518380
|| | |||||| || ||| ||||||||| |||| ||| | |||||||| |||
Sbjct 121286 CCCAAATAAGCTTCGGCAATTTCTTTCATTTTCAACAAAACCATCGCTGAAATTTCTTCG 121227
Query 518381 GG---GGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCA 518437
|| | | ||| ||| |||| | | | | || || | ||||| || | |
Sbjct 121226 GGAGTGAACAATTTCTT---TTCACCGTTAACAGTAAGTTGAACGTTCGGTTTGTT-CGA 121171
Query 518438 ACATT-AATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAA 518496
|| || || ||||||||| ||| ||| | ||||| ||| | || |
Sbjct 121170 TTTTTCAACCACCGCAAATGGCCACATTTTACGATCCGCTTGAAGACTCTTATCCGACCA 121111
Query 518497 ATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTG-CAGCTT 518555
|||| ||| | | || ||||| || || | ||||| |||||| | | || | |
Sbjct 121110 TTCTCGACCGACCATACGCTTTGCGTCGAATACCGTATTCTCAGGATTAGTGGTCAAC-T 121052
Query 518556 GATATTTGGCTGCATCTCCAATCAGATGTT---CTGTCTCTGTAAATGAAACATATGATG 518612
||| ||| || || || || |||||| | | || | ||||| | ||||| || |
Sbjct 121051 GATTTTTCGCGGCGTCGCCGATCAGACGCTCCCCTTCCGGCGTAAAAGCTACATACGACG 120992
Query 518613 GAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATT 518661
| || | ||||| || |||||||| |||||||||||||| ||||||
Sbjct 120991 GGGTGATCCGATTGCCCTGATCATTGGCAATAATTTCAACACGACCATT 120943
>seq1837
Length=395467
Score = 100 bits (110), Expect = 2e-15
Identities = 119/161 (74%), Gaps = 3/161 (2%)
Strand=Plus/Plus
Query 841333 TGTGGTACTGATGAATATGGAACTACAACAATGATTAGAGCTCGTAAGGAAGGTGTAACT 841392
|||||||| ||||||||||| ||| | ||| | | |||| | | |||||||| |||
Sbjct 368060 TGTGGTACAGATGAATATGGGACTGCCACAGAAACAAAAGCTATTGAAGAAGGTGTGACT 368119
Query 841393 TGTCGTGAACTTTGTGATAAGTATTTTGAGTTACACAAAAAAGTTTATGATTGGTTTAAT 841452
| | || |||||||| |||| ||| || || |||||||||| |||||||||
Sbjct 368120 CCCATTCAGCTCTGTGATAAATATTATGAATTGCATCGCGAAGTTTATGAATGGTTTAAT 368179
Query 841453 ATTGAATTTGATGTTTTTGGTAGAACATCTACAACAAAACA 841493
|| |||||||| ||||||| | ||| |||||||||||
Sbjct 368180 ATAAAATTTGATAATTTTGGTCGCACA---ACAACAAAACA 368217
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3780675068440114
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |