Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20nelsoni_20[genbank_20GCA_5F001447455.1_202015-11-24]
2,969 sequences; 47,436,005 total letters
Query= NC_014765.1
Length=198519
Score E
Sequences producing significant alignments: (Bits) Value
seq2516 246 4e-60
seq2371 143 3e-29
seq2690 123 3e-23
>seq2516
Length=768920
Score = 246 bits (272), Expect = 4e-60
Identities = 511/754 (68%), Gaps = 10/754 (1%)
Strand=Plus/Plus
Query 7337 AACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCG 7396
||||| ||||| || || ||||| || || || || ||||| | || || || |||
Sbjct 550977 AACGTGCGCTTCGCTCGTTCACAAGCTGTGCGCAAGCGACGCAATGCGCGTGGATTAGAT 551036
Query 7397 GAAATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAA 7456
|| || || ||||| | || || |||||||| | ||| || | | ||
Sbjct 551037 GACATGTCCTTCTTGTTCTTGCGCTTAAACTCAGCCACGAAATGATTTACCATTCGATTG 551096
Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516
||||| || ||||||||||| || || || || ||||| | ||||| ||||| || ||
Sbjct 551097 TCGAAGTCCTCACCACCCAAATGAGTGTCACCAGCGGTAGACTTGACCTCAAAAATGCCA 551156
Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC- 7575
|||| ||| | || | || |||||||| ||||||||||| |||||||| || || ||
Sbjct 551157 TCTTCGATGGTCAAAATAGACACATCAAAAGTACCACCACCAAGGTCAAATATCAGAACA 551216
Query 7576 GTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTC 7635
||||| || || | || |||| || || || || || || ||||| ||||||||
Sbjct 551217 TTTCGT-TCACCGCCACCCTTTCTATCAAGTCCATAAGCAATTGCAGCCGCTGTTGGTTC 551275
Query 7636 ATTAATAATACG-AAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTC 7694
|| || ||||| || ||| |||| |||| ||| ||| | || ||||| ||||| || |
Sbjct 551276 GTTGATGATACGCAAAACA-TTCAAACCAGAAATCGTTCCAGCGTCTTTGGTCGCCTGAC 551334
Query 7695 GTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGA 7754
| || ||||||||||| || ||||| || || | || || ||| | || | || || |
Sbjct 551335 GCTGAGAATCGTTAAAATATGCCGGAACAGTAATTACGGCATCCTTAACAGTTTTTCCCA 551394
Query 7755 GATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCG 7814
||| | ||| || | || ||||| || | ||||| | || ||||| | |
Sbjct 551395 AATAAGCTTCGGCAGTTTCCTTCATCTTCACTAACACCATAGCACTGATTTCTTCGGGTG 551454
Query 7815 CAAACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGG 7874
||| |||| || || || | || |||| ||| | ||||| || || ||
Sbjct 551455 TAAATGACTTCGACTCGCCTTTGTATTCGACTTGAATTTTAGGTTT---CGATCCATCGT 551511
Query 7875 GGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTC 7934
|||||| || | | ||||| ||||||||| || ||| || ||| |
Sbjct 551512 TGATAACTTTGAATGGCCAATGTTTCATATCAGACTGCACCGCAGCATCATCAAATCGAC 551571
Query 7935 TTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCT 7994
||||| || ||||| |||||||||||||| || | || |||| || ||| || |
Sbjct 551572 GACCGATGAGTCGCTTCGCATCAAAAACTGTATTATGAGGATTCAACGCAACTTGATTTT 551631
Query 7995 TCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCG 8054
| ||||| || || || || || || || || || || || || || ||| || |
Sbjct 551632 TTGCCGCATCTCCAATCAGTCGCTCGGTA---TCGGTGAAAGCAACATAACTTGGCGTGG 551688
Query 8055 TTCGATTCCCTTGGTCGTTCGCAATAATTTCTAC 8088
| ||||||||||| ||||| ||||||||||| ||
Sbjct 551689 TACGATTCCCTTGATCGTTGGCAATAATTTCAAC 551722
Score = 131 bits (144), Expect = 2e-25
Identities = 197/279 (71%), Gaps = 6/279 (2%)
Strand=Plus/Plus
Query 7040 GCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAA 7099
|| || || || || || || || || || || |||| || |||||||| || ||||||
Sbjct 550625 GCTCCATAGGCAACAGCTTCGTCTGGATTGATGCTTTTGTTAAGTTCTTTCCCATTAAAA 550684
Query 7100 TAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATT 7159
|||| |||| | |||| ||| || || || || |||||||| |||||||| | |
Sbjct 550685 AAATCTTGCAACAACTTCTGAACTTTAGGAATGCGAGTAGATCCACCCACCAAAACAACT 550744
Query 7160 TCAT---TCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCC 7216
|||| ||||| | ||| || | || | ||| ||||| | |||||| || ||||||
Sbjct 550745 TCATGAATCACT---GCTTTGTCTAATTTCGCGTCACGAAGAGCTTTTTCTACTGGTTCC 550801
Query 7217 ATACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTA 7276
| | |||||||||||| | || || || || || || | |||||| | ||
Sbjct 550802 AAAGTAGAACGGAACAAGTCAGCATTCAACTCTTCGAAGCGAGCTCTGGTAATAGTGGTG 550861
Query 7277 TAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATG 7315
|||||||||| ||| ||||| | |||||||||||||
Sbjct 550862 TAGAAATCAATGCCTTCGTAGAGGCTATCAATTTCAATG 550900
>seq2371
Length=372962
Score = 143 bits (158), Expect = 3e-29
Identities = 311/462 (67%), Gaps = 5/462 (1%)
Strand=Plus/Minus
Query 7631 GGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCT 7690
||||| || || || |||| | || || |||||||| || |||||||||| || |||
Sbjct 121406 GGTTCGTTGATGATTCGAACAACATTAAGACCAGCAATGGTGCCCGCATCTTTGGTAGCT 121347
Query 7691 TGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTA 7750
|| ||||| | |||||| || || || || || || ||||| || | | |||| ||
Sbjct 121346 TGACGTTGTGCATCGTTGAAATAAGCGGGAACGGTGACGACGGCATTTTTCACTTCTTTG 121287
Query 7751 CCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCA 7810
|| | ||| | ||| || || ||||||||||| | |||||||| |||||| |||||
Sbjct 121286 CCCAAATAAGCTTCGGCAATTTCTTTCATTTTCAACAAAACCATCGCTGAAATTTCTTCG 121227
Query 7811 GCCGCAAACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCA 7870
| | ||| |||| |||||||||||| | || || || | ||||| | ||
Sbjct 121226 GGAGTGAACAATTTCTTTTCACCGTTAACAGTAAGTTGAACGTTCGGTTTGTTCGATTTT 121167
Query 7871 CCGGGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGA-CCTGTTGGTCCGAAAA 7929
| | ||| | | | ||| ||| ||| |||| | || || ||||| |
Sbjct 121166 TC---AACCACCGCAAATGGCCACATTTTACGATCCGCTTGAAGACTCTT-ATCCGACCA 121111
Query 7930 CTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTG 7989
| || |||| | ||||||||| || || || || || | || || ||| ||
Sbjct 121110 TTCTCGACCGACCATACGCTTTGCGTCGAATACCGTATTCTCAGGATTAGTGGTCAACTG 121051
Query 7990 GTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGG 8049
|| ||||| ||||| ||||| ||||| || | |||||| || || ||||| ||
Sbjct 121050 ATTTTTCGCGGCGTCGCCGATCAGACGCTCCCCTTCCGGCGTAAAAGCTACATACGACGG 120991
Query 8050 GGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCG 8091
||| | ||||| || || || || ||||||||||| || ||
Sbjct 120990 GGTGATCCGATTGCCCTGATCATTGGCAATAATTTCAACACG 120949
>seq2690
Length=629
Score = 123 bits (136), Expect = 3e-23
Identities = 176/248 (71%), Gaps = 0/248 (0%)
Strand=Plus/Plus
Query 6524 TAGTTTTCGAGACCATTCTTCGCCTCGACCTTTTTCGCGTACTTTTCATCTTCATCTTTA 6583
||||| || | | ||||||| ||||| ||||| ||| || || ||||| ||| ||
Sbjct 353 TAGTTCTCCAAAGCATTCTTGGCCTCAACCTTCTTCTTGTGCTCCTCATCCTCAGACTTG 412
Query 6584 TACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGATAATCTCCCCTTATCA 6643
|| || ||||| ||||| |||||||| ||||| || || || || | ||| ||||| |||
Sbjct 413 TATTTCTCCGCTTCTTGCACCATCTTCTCAATCTCCTCCTTGGACAGTCTTCCCTTGTCA 472
Query 6644 TTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCAGCACTTACATTCAAA 6703
|| || || |||||||| | | || | | ||| || |||||| ||||| | |
Sbjct 473 TTAGTGATTGTAATCTTGTTCTTCTGGCCAGTTGTCTTGTCCTCAGCAGAGACATTGAGA 532
Query 6704 ATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTACCCCTCGGTGCGGCT 6763
|| ||||||||||||| || || | ||| | || || || ||||| ||||| |
Sbjct 533 ATGCCATTTGCATCAATGTCAAAGCAAACAGTGATCTGAGGGACTCCCCTAGGTGCTGGA 592
Query 6764 GGAATACC 6771
||||| ||
Sbjct 593 GGAATGCC 600
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 635109228633960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |