Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20nelsoni_20[genbank_20GCA_5F001447455.1_202015-11-24] 2,969 sequences; 47,436,005 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq2516 246 4e-60 seq2371 143 3e-29 seq2690 123 3e-23 >seq2516 Length=768920 Score = 246 bits (272), Expect = 4e-60 Identities = 511/754 (68%), Gaps = 10/754 (1%) Strand=Plus/Plus Query 7337 AACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCG 7396 ||||| ||||| || || ||||| || || || || ||||| | || || || ||| Sbjct 550977 AACGTGCGCTTCGCTCGTTCACAAGCTGTGCGCAAGCGACGCAATGCGCGTGGATTAGAT 551036 Query 7397 GAAATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAA 7456 || || || ||||| | || || |||||||| | ||| || | | || Sbjct 551037 GACATGTCCTTCTTGTTCTTGCGCTTAAACTCAGCCACGAAATGATTTACCATTCGATTG 551096 Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| || ||||||||||| || || || || ||||| | ||||| ||||| || || Sbjct 551097 TCGAAGTCCTCACCACCCAAATGAGTGTCACCAGCGGTAGACTTGACCTCAAAAATGCCA 551156 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC- 7575 |||| ||| | || | || |||||||| ||||||||||| |||||||| || || || Sbjct 551157 TCTTCGATGGTCAAAATAGACACATCAAAAGTACCACCACCAAGGTCAAATATCAGAACA 551216 Query 7576 GTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTC 7635 ||||| || || | || |||| || || || || || || ||||| |||||||| Sbjct 551217 TTTCGT-TCACCGCCACCCTTTCTATCAAGTCCATAAGCAATTGCAGCCGCTGTTGGTTC 551275 Query 7636 ATTAATAATACG-AAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTC 7694 || || ||||| || ||| |||| |||| ||| ||| | || ||||| ||||| || | Sbjct 551276 GTTGATGATACGCAAAACA-TTCAAACCAGAAATCGTTCCAGCGTCTTTGGTCGCCTGAC 551334 Query 7695 GTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGA 7754 | || ||||||||||| || ||||| || || | || || ||| | || | || || | Sbjct 551335 GCTGAGAATCGTTAAAATATGCCGGAACAGTAATTACGGCATCCTTAACAGTTTTTCCCA 551394 Query 7755 GATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCG 7814 ||| | ||| || | || ||||| || | ||||| | || ||||| | | Sbjct 551395 AATAAGCTTCGGCAGTTTCCTTCATCTTCACTAACACCATAGCACTGATTTCTTCGGGTG 551454 Query 7815 CAAACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGG 7874 ||| |||| || || || | || |||| ||| | ||||| || || || Sbjct 551455 TAAATGACTTCGACTCGCCTTTGTATTCGACTTGAATTTTAGGTTT---CGATCCATCGT 551511 Query 7875 GGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTC 7934 |||||| || | | ||||| ||||||||| || ||| || ||| | Sbjct 551512 TGATAACTTTGAATGGCCAATGTTTCATATCAGACTGCACCGCAGCATCATCAAATCGAC 551571 Query 7935 TTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCT 7994 ||||| || ||||| |||||||||||||| || | || |||| || ||| || | Sbjct 551572 GACCGATGAGTCGCTTCGCATCAAAAACTGTATTATGAGGATTCAACGCAACTTGATTTT 551631 Query 7995 TCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCG 8054 | ||||| || || || || || || || || || || || || || ||| || | Sbjct 551632 TTGCCGCATCTCCAATCAGTCGCTCGGTA---TCGGTGAAAGCAACATAACTTGGCGTGG 551688 Query 8055 TTCGATTCCCTTGGTCGTTCGCAATAATTTCTAC 8088 | ||||||||||| ||||| ||||||||||| || Sbjct 551689 TACGATTCCCTTGATCGTTGGCAATAATTTCAAC 551722 Score = 131 bits (144), Expect = 2e-25 Identities = 197/279 (71%), Gaps = 6/279 (2%) Strand=Plus/Plus Query 7040 GCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAA 7099 || || || || || || || || || || || |||| || |||||||| || |||||| Sbjct 550625 GCTCCATAGGCAACAGCTTCGTCTGGATTGATGCTTTTGTTAAGTTCTTTCCCATTAAAA 550684 Query 7100 TAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATT 7159 |||| |||| | |||| ||| || || || || |||||||| |||||||| | | Sbjct 550685 AAATCTTGCAACAACTTCTGAACTTTAGGAATGCGAGTAGATCCACCCACCAAAACAACT 550744 Query 7160 TCAT---TCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCC 7216 |||| ||||| | ||| || | || | ||| ||||| | |||||| || |||||| Sbjct 550745 TCATGAATCACT---GCTTTGTCTAATTTCGCGTCACGAAGAGCTTTTTCTACTGGTTCC 550801 Query 7217 ATACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTA 7276 | | |||||||||||| | || || || || || || | |||||| | || Sbjct 550802 AAAGTAGAACGGAACAAGTCAGCATTCAACTCTTCGAAGCGAGCTCTGGTAATAGTGGTG 550861 Query 7277 TAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATG 7315 |||||||||| ||| ||||| | ||||||||||||| Sbjct 550862 TAGAAATCAATGCCTTCGTAGAGGCTATCAATTTCAATG 550900 >seq2371 Length=372962 Score = 143 bits (158), Expect = 3e-29 Identities = 311/462 (67%), Gaps = 5/462 (1%) Strand=Plus/Minus Query 7631 GGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCT 7690 ||||| || || || |||| | || || |||||||| || |||||||||| || ||| Sbjct 121406 GGTTCGTTGATGATTCGAACAACATTAAGACCAGCAATGGTGCCCGCATCTTTGGTAGCT 121347 Query 7691 TGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTA 7750 || ||||| | |||||| || || || || || || ||||| || | | |||| || Sbjct 121346 TGACGTTGTGCATCGTTGAAATAAGCGGGAACGGTGACGACGGCATTTTTCACTTCTTTG 121287 Query 7751 CCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCA 7810 || | ||| | ||| || || ||||||||||| | |||||||| |||||| ||||| Sbjct 121286 CCCAAATAAGCTTCGGCAATTTCTTTCATTTTCAACAAAACCATCGCTGAAATTTCTTCG 121227 Query 7811 GCCGCAAACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCA 7870 | | ||| |||| |||||||||||| | || || || | ||||| | || Sbjct 121226 GGAGTGAACAATTTCTTTTCACCGTTAACAGTAAGTTGAACGTTCGGTTTGTTCGATTTT 121167 Query 7871 CCGGGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGA-CCTGTTGGTCCGAAAA 7929 | | ||| | | | ||| ||| ||| |||| | || || ||||| | Sbjct 121166 TC---AACCACCGCAAATGGCCACATTTTACGATCCGCTTGAAGACTCTT-ATCCGACCA 121111 Query 7930 CTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTG 7989 | || |||| | ||||||||| || || || || || | || || ||| || Sbjct 121110 TTCTCGACCGACCATACGCTTTGCGTCGAATACCGTATTCTCAGGATTAGTGGTCAACTG 121051 Query 7990 GTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGG 8049 || ||||| ||||| ||||| ||||| || | |||||| || || ||||| || Sbjct 121050 ATTTTTCGCGGCGTCGCCGATCAGACGCTCCCCTTCCGGCGTAAAAGCTACATACGACGG 120991 Query 8050 GGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCG 8091 ||| | ||||| || || || || ||||||||||| || || Sbjct 120990 GGTGATCCGATTGCCCTGATCATTGGCAATAATTTCAACACG 120949 >seq2690 Length=629 Score = 123 bits (136), Expect = 3e-23 Identities = 176/248 (71%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 6524 TAGTTTTCGAGACCATTCTTCGCCTCGACCTTTTTCGCGTACTTTTCATCTTCATCTTTA 6583 ||||| || | | ||||||| ||||| ||||| ||| || || ||||| ||| || Sbjct 353 TAGTTCTCCAAAGCATTCTTGGCCTCAACCTTCTTCTTGTGCTCCTCATCCTCAGACTTG 412 Query 6584 TACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGATAATCTCCCCTTATCA 6643 || || ||||| ||||| |||||||| ||||| || || || || | ||| ||||| ||| Sbjct 413 TATTTCTCCGCTTCTTGCACCATCTTCTCAATCTCCTCCTTGGACAGTCTTCCCTTGTCA 472 Query 6644 TTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCAGCACTTACATTCAAA 6703 || || || |||||||| | | || | | ||| || |||||| ||||| | | Sbjct 473 TTAGTGATTGTAATCTTGTTCTTCTGGCCAGTTGTCTTGTCCTCAGCAGAGACATTGAGA 532 Query 6704 ATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTACCCCTCGGTGCGGCT 6763 || ||||||||||||| || || | ||| | || || || ||||| ||||| | Sbjct 533 ATGCCATTTGCATCAATGTCAAAGCAAACAGTGATCTGAGGGACTCCCCTAGGTGCTGGA 592 Query 6764 GGAATACC 6771 ||||| || Sbjct 593 GGAATGCC 600 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635109228633960