Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20nelsoni_20[genbank_20GCA_5F001447455.1_202015-11-24]
2,969 sequences; 47,436,005 total letters
Query= NC_014767.1
Length=184095
Score E
Sequences producing significant alignments: (Bits) Value
seq2810 95.1 1e-14
seq279 87.8 2e-12
seq188 82.4 9e-11
>seq2810
Length=199988
Score = 95.1 bits (104), Expect = 1e-14
Identities = 131/181 (72%), Gaps = 2/181 (1%)
Strand=Plus/Plus
Query 109413 ATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGCATTGAAGAGAGTTT 109472
||| ||||| || ||||| ||||| |||||| |||| | ||||||||| | | |||
Sbjct 182041 ATAGTACATCCCAGTTTTCAGACCCTTCTTCCAGCCGTAGAAATGCATTGATGTCAATTT 182100
Query 109473 GGAAAGTGTCGGACTCTCC-ATAAACAAGTTCATCGACTGAGACTGATCGATGAATCGAC 109531
| | |||| ||| | || | |||| |||||| || ||||| |||||| |
Sbjct 182101 AGCATAATTCGG-CTCGGCTATGTGAATATTCAACGACTGGGATTGATCAATGAATGCTC 182159
Query 109532 CACGATCAGCCGCCATGTCGATGATACACTTTTGGCTAATTTCCCAGACAGTCTTGTACA 109591
| | || || |||||||| |||| ||||||||| ||||||||| || ||||||||||
Sbjct 182160 CCCTTTCGGCGGCCATGTCTATGACGCACTTTTGGGAAATTTCCCAAACCGTCTTGTACA 182219
Query 109592 A 109592
|
Sbjct 182220 A 182220
>seq279
Length=600148
Score = 87.8 bits (96), Expect = 2e-12
Identities = 54/58 (93%), Gaps = 0/58 (0%)
Strand=Plus/Minus
Query 136716 ATAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCC 136773
|||||||||||||||||||||||||||| ||||||| |||||| |||||||||||||
Sbjct 446988 ATAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCTAAGGTCGTGGGTTCGAGCCCC 446931
>seq188
Length=598230
Score = 82.4 bits (90), Expect = 9e-11
Identities = 53/58 (91%), Gaps = 0/58 (0%)
Strand=Plus/Plus
Query 136716 ATAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCC 136773
|||||||||| ||||||||||||||||| ||||||| |||||| |||||||||||||
Sbjct 43116 ATAGCTCAGTCGGTTAGAGCGTGGTGCTAATAACGCTAAGGTCGTGGGTTCGAGCCCC 43173
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588954141628200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |