Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20nelsoni_20[genbank_20GCA_5F001447455.1_202015-11-24] 2,969 sequences; 47,436,005 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq2810 95.1 1e-14 seq279 87.8 2e-12 seq188 82.4 9e-11 >seq2810 Length=199988 Score = 95.1 bits (104), Expect = 1e-14 Identities = 131/181 (72%), Gaps = 2/181 (1%) Strand=Plus/Plus Query 109413 ATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGCATTGAAGAGAGTTT 109472 ||| ||||| || ||||| ||||| |||||| |||| | ||||||||| | | ||| Sbjct 182041 ATAGTACATCCCAGTTTTCAGACCCTTCTTCCAGCCGTAGAAATGCATTGATGTCAATTT 182100 Query 109473 GGAAAGTGTCGGACTCTCC-ATAAACAAGTTCATCGACTGAGACTGATCGATGAATCGAC 109531 | | |||| ||| | || | |||| |||||| || ||||| |||||| | Sbjct 182101 AGCATAATTCGG-CTCGGCTATGTGAATATTCAACGACTGGGATTGATCAATGAATGCTC 182159 Query 109532 CACGATCAGCCGCCATGTCGATGATACACTTTTGGCTAATTTCCCAGACAGTCTTGTACA 109591 | | || || |||||||| |||| ||||||||| ||||||||| || |||||||||| Sbjct 182160 CCCTTTCGGCGGCCATGTCTATGACGCACTTTTGGGAAATTTCCCAAACCGTCTTGTACA 182219 Query 109592 A 109592 | Sbjct 182220 A 182220 >seq279 Length=600148 Score = 87.8 bits (96), Expect = 2e-12 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 136716 ATAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCC 136773 |||||||||||||||||||||||||||| ||||||| |||||| ||||||||||||| Sbjct 446988 ATAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCTAAGGTCGTGGGTTCGAGCCCC 446931 >seq188 Length=598230 Score = 82.4 bits (90), Expect = 9e-11 Identities = 53/58 (91%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 136716 ATAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCC 136773 |||||||||| ||||||||||||||||| ||||||| |||||| ||||||||||||| Sbjct 43116 ATAGCTCAGTCGGTTAGAGCGTGGTGCTAATAACGCTAAGGTCGTGGGTTCGAGCCCC 43173 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588954141628200