Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20nelsoni_20[genbank_20GCA_5F001447455.1_202015-11-24]
2,969 sequences; 47,436,005 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq2680 170 4e-37
seq1187 104 5e-17
seq827 104 5e-17
seq1292 93.3 9e-14
seq2465 89.7 1e-12
>seq2680
Length=639
Score = 170 bits (188), Expect = 4e-37
Identities = 163/209 (78%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
||||||||||| || ||||| || || |||||||| || || || || | |||||| |||
Sbjct 586 ACAAGGTGAAGGGTAGACTCCTTCTGGATATTGTAGTCTGCCAGGGTACGCCCATCCTCG 527
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|||||||| || || |||||||| | || |||||||| ||||| || || |||||||||
Sbjct 526 AGCTGCTTGCCGGCAAAGATAAGCCTCTGCTGGTCTGGTGGAATCCCCTCCTTGTCTTGA 467
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
|| || ||| || || ||||||||||| || || ||||| |||||||| | |||||
Sbjct 466 ATCTTGGCCTTCACATTGTCAATGGTGTCTGAGCTCTCCACCTCAAGGGTGATGGTCTTC 407
Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140
||||| | ||| || || || | |||||
Sbjct 406 CCTGTAAGAGTCTTGACAAAAATCTGCAT 378
>seq1187
Length=25466
Score = 104 bits (114), Expect = 5e-17
Identities = 110/145 (76%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 194996 GCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTT 195055
|| |||| || || ||||| || ||||| || || || |||||||||||||||||||| |
Sbjct 20713 GCATACCAGCAAAAATAAGCCGCTGTTGATCCGGTGGGATGCCTTCTTTGTCTTGAATCT 20654
Query 195056 TTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTG 195115
| || || || ||||| || || || || |||||||| |||| ||| |||||||
Sbjct 20653 TGCTTTTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTG 20594
Query 195116 TCAAAGTTTTTACGAACACTTGCAT 195140
|||| ||||| || || | |||||
Sbjct 20593 TCAACGTTTTCACAAATATCTGCAT 20569
Score = 102 bits (112), Expect = 2e-16
Identities = 110/146 (75%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056
|||||| || || || || |||||||| || || ||||| || ||||| || ||||||||
Sbjct 20380 CTTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTT 20321
Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116
||| || || ||||||||||| || |||||||| || |||| || || || ||
Sbjct 20320 ACCCTTCACATTTTCAATGGTGTCTGAGGGCTCCACTTCCAGTGTAATGGTTTTCCCAGT 20261
Query 195117 CAAAGTTTTTACGAACACTTGCATTT 195142
|| |||||| || || | |||||||
Sbjct 20260 CAGAGTTTTGACAAATATCTGCATTT 20235
>seq827
Length=57960
Score = 104 bits (114), Expect = 5e-17
Identities = 110/145 (76%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 194996 GCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTT 195055
|| |||| || || ||||| || ||||| || || || |||||||||||||||||||| |
Sbjct 31411 GCATACCAGCAAAAATAAGCCGCTGTTGATCCGGTGGGATGCCTTCTTTGTCTTGAATCT 31470
Query 195056 TTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTG 195115
| || || || ||||| || || || || |||||||| |||| ||| |||||||
Sbjct 31471 TGCTTTTTACATTTTCAATTGTATCTGATGGCTCAACTTCAAGTGTAATCGTTTTTCCTG 31530
Query 195116 TCAAAGTTTTTACGAACACTTGCAT 195140
|||| ||||| || || | |||||
Sbjct 31531 TCAACGTTTTCACAAATATCTGCAT 31555
>seq1292
Length=279
Score = 93.3 bits (102), Expect = 9e-14
Identities = 117/161 (73%), Gaps = 0/161 (0%)
Strand=Plus/Plus
Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997
|| || || ||||| || ||||| |||||||| || | || || || || |||||||||
Sbjct 119 TGGAGGGTTGACTCCTTCTGAATGTTGTAATCAGCCAAGGTCCTACCGTCCTCGAGCTGC 178
Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057
|| || |||||||| | | || || || || || || ||||| || || || || ||
Sbjct 179 TTTCCGGCGAAGATCAACCTCTGCTGATCCGGTGGGATCCCTTCCTTATCCTGGATCTTG 238
Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098
||||||||| ||||| || || || || || || || ||
Sbjct 239 GCCTTGACGTTATCAATTGTATCGGAGCTCTCAACCTCCAG 279
>seq2465
Length=325902
Score = 89.7 bits (98), Expect = 1e-12
Identities = 106/144 (74%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057
||||| || || || | ||| || || || || ||||||||||||||||||||||||||
Sbjct 16914 TTACCAGCAAATATCAATCGCTGCTGATCAGGTGGAATGCCTTCTTTGTCTTGAATTTTG 16973
Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117
|| || || ||||| ||||||||| || || || | || | || ||||| ||
Sbjct 16974 CTTTTCACATTTTCAATCGTGTCCGAAGGCTCTACCTCCAATGTGATTGTTTTTCCAGTT 17033
Query 195118 AAAGTTTTTACGAACACTTGCATT 195141
|| ||||| || || | ||||||
Sbjct 17034 AATGTTTTCACAAAAATCTGCATT 17057
Score = 87.8 bits (96), Expect = 4e-12
Identities = 105/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057
|||||||| ||||| | || ||| || || |||||||||||||| || || ||||||||
Sbjct 17878 TTACCTGCAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAATTTTA 17937
Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117
|| || || || |||||||| || ||| ||||| || || | || ||||| ||
Sbjct 17938 CTTTTAACATTTTCGATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAGTA 17997
Query 195118 AAAGTTTTTACGAACACTTGCAT 195140
| || || ||||| | |||||
Sbjct 17998 AGTGTCTTCACGAATATCTGCAT 18020
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1109439394973223
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |