Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20nelsoni_20[genbank_20GCA_5F001447455.1_202015-11-24] 2,969 sequences; 47,436,005 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq2810 123 3e-23 >seq2810 Length=199988 Score = 123 bits (136), Expect = 3e-23 Identities = 185/267 (69%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 47486 TTTCCAATCCCAAAGATCTGATGGAACAACATTCCAAAAATCATATTGAAGAATTCCTTT 47545 || ||||||||| | ||| | || ||||||||| | |||||||||||||| || || Sbjct 182653 TTCCCAATCCCACAAATCCGTAGGCTGAACATTCCACATGTCATATTGAAGAATACCCTT 182712 Query 47546 ACTTATCGGAGAACCATTATATGTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACT 47605 ||| || || || | ||| || | || || || | |||| || | || ||||| Sbjct 182713 ACTAGCTGGTGAGCCTTGATAAGTCTCGTATGGGCCAAACTGTTTTGCCAAATCGCAACT 182772 Query 47606 TGCTTCCAATGCACTATAATATATTGTTTCAAATATTTTTATGTTTAGATTCCTTGCTTC 47665 ||| || ||| |||||| || |||||||| ||||| | || | || ||||| Sbjct 182773 GCTTTCTAACGCAGCATAATAGATGGTTTCAAAAATTTTCTTATTCAACAATCTAGCTTC 182832 Query 47666 TGATGATTCAAAAGGATANNNNNNNNNNNNNAATGTATCTGCCAATCCTTGAACACCAAT 47725 | |||||||| ||||| || | ||| ||||||||||| |||||||| Sbjct 182833 TTCGGATTCAAACGGATATCGCATCAAAATAAAAGCATCCGCCAATCCTTGCACACCAAT 182892 Query 47726 ACCAATTGGTCTATGAGTTTTATTAGA 47752 ||||||||||| |||| ||| ||||| Sbjct 182893 ACCAATTGGTCGATGACGTTTGTTAGA 182919 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 48117 TATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACAC 48176 ||||| || ||||| ||||| || ||| || | || ||||||||||||| ||| ||| Sbjct 183479 TATAATTTTTCAAACTCATCGCCCCACAAATCCGCCAATCCAGGACATTCATGAGGGCAC 183538 Query 48177 ATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGA 48236 |||| ||||||||| | || || | | |||| |||| ||| |||||||| || Sbjct 183539 ATCAGTGACCAATCTCCGTCGGCTTCAATGCGCTTCATGAATAGATCAGGTATCCAGAGG 183598 Query 48237 GCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGA 48296 || ||| ||||| | | || |||||| ||| | ||| |||| |||||| Sbjct 183599 GCGTAAAACAAATCTCGGGCTCGGTTTTCTTCGACGCCTGTGTTCTTTTTCGCGTCAAGA 183658 Query 48297 AAGTCCATTATATCAGCATGCCATGGTTCTAAATA 48331 || || | ||| || || ||||| ||||| ||||| Sbjct 183659 AAATCAAATATGTCTGCGTGCCAAGGTTCCAAATA 183693 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562087938737160