Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20nelsoni_20[genbank_20GCA_5F001447455.1_202015-11-24] 2,969 sequences; 47,436,005 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq2516 284 1e-70 seq2371 131 1e-24 seq1187 113 4e-19 seq827 105 5e-17 seq319 100 2e-15 seq378 98.7 8e-15 seq11 95.1 1e-13 seq2382 93.3 3e-13 seq2465 91.5 1e-12 seq2446 86.0 5e-11 >seq2516 Length=768920 Score = 284 bits (314), Expect = 1e-70 Identities = 394/548 (72%), Gaps = 8/548 (1%) Strand=Plus/Minus Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051 ||||| || || ||||| || || || || ||||||||||| || | || |||||||| Sbjct 551782 GCTATTGGAATTGATTTGGGTACTACCTACAGTTGTGTTGGCGTGTTCCAGCATGGTAAA 551723 Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 ||||||||||||||||| |||||||| || | || || ||| ||||||| ||||||| Sbjct 551722 GTTGAAATTATTGCCAACGATCAAGGGAATCGTACCACGCCAAGTTATGTTGCTTTCACC 551663 Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAAT 550171 || || || | | |||| ||||| |||||| |||||| | |||||| ||| Sbjct 551662 GATACCGAGCGACTGATTGGAGATGCGGCAAAAAATCAAGTTGCGTTGAATCCTCATAAT 551603 Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCA 550231 || |||||||||| || || | || || | | ||| ||||| | | || ||| | Sbjct 551602 ACAGTTTTTGATGCGAAGCGACTCATCGGTCGTCGATTTGATGATGCTGCGGTGCAGTCT 551543 Query 550232 GATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGA---AAACCTTATATTGAA 550288 |||||||| |||||||| ||| || || | || | |||| |||||| | ||| || Sbjct 551542 GATATGAAACATTGGCCATTCAAAGTTATCAACG---ATGGATCGAAACCTAAAATTCAA 551486 Query 550289 G-CTACTCATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTT 550347 | | | | | |||| || |||| |||| ||| |||| ||||||| || Sbjct 551485 GTCGAAT-ACAAAGGCGAGTCGAAGTCATTTACACCCGAAGAAATCAGTGCTATGGTGTT 551427 Query 550348 AATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAAT 550407 | |||| ||||| |||| ||| |||| | | || || |||| |||||| ||||| Sbjct 551426 AGTGAAGATGAAGGAAACTGCCGAAGCTTATTTGGGAAAAACTGTTAAGGATGCCGTAAT 551367 Query 550408 AACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTAT 550467 ||||| || ||||||||||| || || || ||||| || || ||||| |||||| || Sbjct 551366 TACTGTTCCGGCATATTTTAACGATTCTCAGCGTCAGGCGACCAAAGACGCTGGAACGAT 551307 Query 550468 TGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGG 550527 | |||| | |||||| | ||||| ||||| ||||| || || |||||| |||| ||||| Sbjct 551306 TTCTGGTTTGAATGTTTTGCGTATCATCAACGAACCAACAGCGGCTGCAATTGCTTATGG 551247 Query 550528 ACTTGATA 550535 |||||||| Sbjct 551246 ACTTGATA 551239 >seq2371 Length=372962 Score = 131 bits (144), Expect = 1e-24 Identities = 138/182 (76%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 550322 CCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTT 550381 || ||| |||||||| | |||||||| ||||||||||| ||| ||| |||| | | Sbjct 121225 CCCGAAGAAATTTCAGCGATGGTTTTGTTGAAAATGAAAGAAATTGCCGAAGCTTATTTG 121284 Query 550382 GGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGT 550441 || ||||||| | |||| || | || || || || ||||| || || |||||||| Sbjct 121285 GGCAAAGAAGTGAAAAATGCCGTCGTCACCGTTCCCGCTTATTTCAACGATGCACAACGT 121344 Query 550442 CAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAA 550501 |||||||| |||||||| || |||||||| ||||||||| |||| || ||||| ||| Sbjct 121345 CAAGCTACCAAAGATGCGGGCACCATTGCTGGTCTTAATGTTGTTCGAATCATCAACGAA 121404 Query 550502 CC 550503 || Sbjct 121405 CC 121406 Score = 100 bits (110), Expect = 2e-15 Identities = 117/158 (74%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 552432 GTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGT 552491 ||||| |||||| |||| ||||| ||| || | | || ||||| || ||| ||||| Sbjct 122374 GTTACTATTCAAGTTTTCGAAGGCGAACGACCAATGACCAAAGACAACCATCTTCTTGGG 122433 Query 552492 ACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACT 552551 | || || | || || ||||| ||||| ||||| ||||| |||||||||||||| Sbjct 122434 AAATTCGATCTGACCGGCATACCTCCGGCTCCGCGTGGGGTACCACAAATTGAAGTTACA 122493 Query 552552 TTCGATATCGATGCCAATGGAATTTTGAATGTGACTGC 552589 ||||||||||| | || || |||||| | || || || Sbjct 122494 TTCGATATCGACGTGAACGGCATTTTGCACGTCACCGC 122531 >seq1187 Length=25466 Score = 113 bits (124), Expect = 4e-19 Identities = 111/141 (79%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394 || |||||||| || | ||||||||| || ||||||||||| ||||| || ||||| | Sbjct 22124 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCCTTATCCTGTATTTTGCCT 22065 Query 563395 TTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACCAGTAAG 563453 ||||| ||| |||||||||| || ||| ||| | || | ||||| |||||||| Sbjct 22064 TTTACATTCTCTATTGTATCAGATGGTTCTAC-TTCCAATGTTATTGTTTTTCCAGTAAG 22006 Query 563454 AGTTTTAACGAAAATTTGCAT 563474 ||| ||||||||||||||||| Sbjct 22005 AGTCTTAACGAAAATTTGCAT 21985 Score = 98.7 bits (108), Expect = 8e-15 Identities = 108/141 (77%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394 || |||||||| || | ||||||||| || ||||||||||||||||| || ||||| | Sbjct 20990 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCCTGTATTTTCCCT 20931 Query 563395 TTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAACAGTTTTACCAGTAAG 563453 || || ||||||||||||| || | || ||| | || | ||||| ||||| || Sbjct 20930 TTCACATTTTCAATTGTATCAG-ATGGTTCCACTTCCAATGTGATGGTTTTGCCAGTGAG 20872 Query 563454 AGTTTTAACGAAAATTTGCAT 563474 || ||||| ||||||||||| Sbjct 20871 GGTCTTAACAAAAATTTGCAT 20851 Score = 98.7 bits (108), Expect = 8e-15 Identities = 108/141 (77%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394 || |||||||| || | ||||||||| || ||||||||||||||||| || ||||| | Sbjct 21273 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCCTGTATTTTCCCT 21214 Query 563395 TTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAACAGTTTTACCAGTAAG 563453 || || ||||||||||||| || | || ||| | || | ||||| ||||| || Sbjct 21213 TTCACATTTTCAATTGTATCAG-ATGGTTCCACTTCCAATGTGATGGTTTTGCCAGTGAG 21155 Query 563454 AGTTTTAACGAAAATTTGCAT 563474 || ||||| ||||||||||| Sbjct 21154 GGTCTTAACAAAAATTTGCAT 21134 Score = 98.7 bits (108), Expect = 8e-15 Identities = 108/141 (77%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394 || |||||||| || | ||||||||| || ||||||||||||||||| || ||||| | Sbjct 21556 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCCTGTATTTTCCCT 21497 Query 563395 TTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAACAGTTTTACCAGTAAG 563453 || || ||||||||||||| || | || ||| | || | ||||| ||||| || Sbjct 21496 TTCACATTTTCAATTGTATCAG-ATGGTTCCACTTCCAATGTGATGGTTTTGCCAGTGAG 21438 Query 563454 AGTTTTAACGAAAATTTGCAT 563474 || ||||| ||||||||||| Sbjct 21437 GGTCTTAACAAAAATTTGCAT 21417 Score = 89.7 bits (98), Expect = 4e-12 Identities = 106/141 (75%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394 || ||||| || | | ||||||||| || ||||||||||||||||| || ||||| | Sbjct 22407 CCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCCTGTATTTTCCCT 22348 Query 563395 TTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAACAGTTTTACCAGTAAG 563453 || || ||||||||||||| || | || ||| | || | ||||| ||||| || Sbjct 22347 TTCACATTTTCAATTGTATCAG-ATGGTTCCACTTCCAATGTGATGGTTTTGCCAGTGAG 22289 Query 563454 AGTTTTAACGAAAATTTGCAT 563474 || ||||| ||||||||||| Sbjct 22288 GGTCTTAACAAAAATTTGCAT 22268 Score = 86.0 bits (94), Expect = 5e-11 Identities = 105/141 (74%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394 || |||||||| | | ||| ||||| || ||||||||||| ||||| || ||||| | Sbjct 21839 CCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTCCCT 21780 Query 563395 TTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAACAGTTTTACCAGTAAG 563453 || || ||||||||||||| || | || ||| | || | ||||| ||||| || Sbjct 21779 TTCACATTTTCAATTGTATCAG-ATGGTTCCACTTCCAATGTGATGGTTTTGCCAGTGAG 21721 Query 563454 AGTTTTAACGAAAATTTGCAT 563474 || ||||| ||||||||||| Sbjct 21720 GGTCTTAACAAAAATTTGCAT 21700 >seq827 Length=57960 Score = 105 bits (116), Expect = 5e-17 Identities = 113/147 (77%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 563329 TGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATT 563388 || || || |||||||| | | ||| ||||| || |||||||| ||||||||||||||| Sbjct 30492 TGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATT 30551 Query 563389 TTTTGTTTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACC 563447 || ||| || || |||||||||| | ||| ||| | ||| | ||||| || Sbjct 30552 TTGCCTTTCACATTTTCTATTGTATCAGATAGTTCTAC-TTCCAAAGTTATTGTTTTTCC 30610 Query 563448 AGTAAGAGTTTTAACGAAAATTTGCAT 563474 ||||||||| ||||||||||||||||| Sbjct 30611 AGTAAGAGTCTTAACGAAAATTTGCAT 30637 Score = 105 bits (116), Expect = 5e-17 Identities = 113/147 (77%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 563329 TGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATT 563388 || || || |||||||| | | ||| ||||| || |||||||| ||||||||||||||| Sbjct 30774 TGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATT 30833 Query 563389 TTTTGTTTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACC 563447 || ||| || || |||||||||| || ||| ||| | ||| | ||||| || Sbjct 30834 TTGCCTTTCACATTTTCTATTGTATCAGATGGTTCTAC-TTCCAAAGTTATTGTTTTTCC 30892 Query 563448 AGTAAGAGTTTTAACGAAAATTTGCAT 563474 |||||| || ||||||||||||||||| Sbjct 30893 AGTAAGGGTCTTAACGAAAATTTGCAT 30919 Score = 104 bits (114), Expect = 2e-16 Identities = 111/144 (77%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 563332 TTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTT 563391 || || |||||||| | | ||| ||||| || |||||||| ||||||||||||||||| Sbjct 30213 TTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATTTTG 30272 Query 563392 TGTTTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACCAGT 563450 ||| || || |||||||||| | ||| ||| | ||| | ||||| ||||| Sbjct 30273 CCTTTCACATTTTCTATTGTATCAGATAGTTCTAC-TTCCAAAGTTATTGTTTTTCCAGT 30331 Query 563451 AAGAGTTTTAACGAAAATTTGCAT 563474 |||||| ||||||||||||||||| Sbjct 30332 AAGAGTCTTAACGAAAATTTGCAT 30355 Score = 89.7 bits (98), Expect = 4e-12 Identities = 106/141 (75%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394 || ||||| || | | ||||||||| || ||||||||||||||||| || ||||| | Sbjct 55492 CCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCCTGTATTTTCCCT 55551 Query 563395 TTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAACAGTTTTACCAGTAAG 563453 || || ||||||||||||| || | || ||| | || | ||||| ||||| || Sbjct 55552 TTCACATTTTCAATTGTATCAG-ATGGTTCCACTTCCAATGTGATGGTTTTGCCAGTGAG 55610 Query 563454 AGTTTTAACGAAAATTTGCAT 563474 || ||||| ||||||||||| Sbjct 55611 GGTCTTAACAAAAATTTGCAT 55631 >seq319 Length=111798 Score = 100 bits (110), Expect = 2e-15 Identities = 122/164 (74%), Gaps = 2/164 (1%) Strand=Plus/Minus Query 370652 TGCAACTGATGATGAAATTAAAAAAGCATACAAAAAACTAGCAATGAAATATCATCCTGA 370711 ||| || || |||||||| |||||||| || || | ||| |||||||||||||||| Sbjct 76727 TGCCACGGAAGATGAAATCAAAAAAGCTTATCGGAAGATGGCATTGAAATATCATCCTGA 76668 Query 370712 TAGAAACAAAAGTCCTGATGCTGAAGAAAAGTTTaaaaaaaTTAGCA-ATGCACATGGTA 370770 | |||||||| ||||| || ||| ||||| ||| | ||| ||| | ||| | | | Sbjct 76667 CAAGAACAAAAGCCCTGACGCAGAAAGCAAGTTCAAAGAGATT-GCAGAAGCATACGATG 76609 Query 370771 TTCTTTCTGATCCTGAAAAGAAACAAACTTATGATAGATTTGGT 370814 |||| |||| || |||||||| ||| || |||| ||||||| Sbjct 76608 TTCTGAGTGATGCTAAAAAGAAAGAAATATACGATAAATTTGGT 76565 >seq378 Length=398 Score = 98.7 bits (108), Expect = 8e-15 Identities = 108/141 (77%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394 || ||||| || | | ||||||||| || ||||||||||| ||||| || ||||| | Sbjct 254 CCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCCTTATCCTGTATTTTGCCT 195 Query 563395 TTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACCAGTAAG 563453 ||||| ||| |||||||||| || ||| ||| | || | ||||| || ||||| Sbjct 194 TTTACATTCTCTATTGTATCAGATGGTTCTAC-TTCCAAGGTGATCGTTTTGCCGGTAAG 136 Query 563454 AGTTTTAACGAAAATTTGCAT 563474 ||| ||||||||||||||||| Sbjct 135 AGTCTTAACGAAAATTTGCAT 115 >seq11 Length=460 Score = 95.1 bits (104), Expect = 1e-13 Identities = 109/144 (76%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 563332 TTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTT 563391 || || ||||| || | | ||| ||||| || ||||||||||| ||||| || ||||| Sbjct 202 TTACCAGCAAATATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTG 143 Query 563392 TGTTTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACCAGT 563450 |||||| ||| |||||||||| || ||| ||| | || | ||||| || || Sbjct 142 CCTTTTACATTCTCTATTGTATCAGATGGTTCTAC-TTCCAAGGTGATCGTTTTGCCGGT 84 Query 563451 AAGAGTTTTAACGAAAATTTGCAT 563474 |||||| ||||||||||||||||| Sbjct 83 AAGAGTCTTAACGAAAATTTGCAT 60 >seq2382 Length=364334 Score = 93.3 bits (102), Expect = 3e-13 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 367540 GAACGTATTGGAAGATGGATTGACGTAAAAAATGAATATAAAACAATGGATACTAATTTC 367599 ||||| |||| ||||||| || | |||||||| |||||||| | || | | |||| Sbjct 313454 GAACGGCTTGGTCGATGGATAGATTTTAAAAATGACTATAAAACTTTATATCCGAGTTTC 313513 Query 367600 ATGGAATCTGTTATTTGGGCATTTAAACAATTATACGAACGCGGTATGATTTTTGAAGGT 367659 ||||||||||| |||| ||| ||||| | || | ||| | | | |||| Sbjct 313514 ATGGAATCTGTATGGTGGGTATTCAAACAGCTGTATAACAAAGGTCTTGTCTACAGAGGT 313573 Query 367660 TATAAAGTAATGCCATATTCAACTGGTTGTAATACTGCTTTGTCACATTTTGAAGCCAAA 367719 ||||| ||||||| ||| |||| ||| ||| | |||||| |||||||| | | Sbjct 313574 GTAAAAGTGATGCCATTTTCTACTGCTTGCGGGACTCCATTGTCAAATTTTGAATCTGGA 313633 Query 367720 CAAAATTATCGAGAAGTAGTTGATCC 367745 |||||||| |||||| ||||||| Sbjct 313634 CAAAATTACAAAGAAGTCATTGATCC 313659 >seq2465 Length=325902 Score = 91.5 bits (100), Expect = 1e-12 Identities = 109/146 (75%), Gaps = 4/146 (3%) Strand=Plus/Plus Query 563332 TTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTT 563391 || || ||||| || | ||||||||||||||||||||| ||||| ||||| |||||||| Sbjct 17878 TTACCTGCAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAATTTTA 17937 Query 563392 TGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA--TTCGAGAGTAACAGTTTTACCAG 563449 ||| || || || || || || || || ||| || || | |||||| |||| Sbjct 17938 CTTTTAACATTTTCGATGGTGTC--TGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAG 17995 Query 563450 TAAGAGTTTTAACGAAAATTTGCATA 563475 |||| || || ||||| || |||||| Sbjct 17996 TAAGTGTCTTCACGAATATCTGCATA 18021 Score = 87.8 bits (96), Expect = 1e-11 Identities = 106/142 (75%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394 || ||||| || | || |||||||||||| ||||| ||||| |||||||||||||| | Sbjct 17203 CCAGCAAATATCAATCGTTGCTGATCAGGCGGAATGCCTTCCTTATCTTGAATTTTACTT 17262 Query 563395 TTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACCAGTAAG 563453 || || ||||| ||||||| || ||| ||| | || | ||||| ||||| | Sbjct 17263 TTCACATTTTCAATCGTATCAGATGGCTCTAC-TTCCAATGTGATTGTTTTTCCAGTTAA 17321 Query 563454 AGTTTTAACGAAAATTTGCATA 563475 ||||| || ||||| |||||| Sbjct 17322 TGTTTTCACAAAAATCTGCATA 17343 >seq2446 Length=334761 Score = 86.0 bits (94), Expect = 5e-11 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 552507 GGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCC 552566 ||||| ||||| || ||||||||||| || ||||| ||||||||||| ||||||||||| Sbjct 75957 GGTATACCTCCGGCCCCTCGTGGAGTTCCACAAATAGAAGTTACTTTTGATATCGATGCA 76016 Query 552567 AATGGAATTTTGAATGTGACTGCTTGTGAT 552596 ||||| || | |||| | |||| | ||| Sbjct 76017 AATGGTATAGTTCATGTCAGTGCTCGAGAT 76046 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029138985889810