Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20nelsoni_20[genbank_20GCA_5F001447455.1_202015-11-24]
2,969 sequences; 47,436,005 total letters
Query= NC_016072.1
Length=1259197
Score E
Sequences producing significant alignments: (Bits) Value
seq2516 284 1e-70
seq2371 131 1e-24
seq1187 113 4e-19
seq827 105 5e-17
seq319 100 2e-15
seq378 98.7 8e-15
seq11 95.1 1e-13
seq2382 93.3 3e-13
seq2465 91.5 1e-12
seq2446 86.0 5e-11
>seq2516
Length=768920
Score = 284 bits (314), Expect = 1e-70
Identities = 394/548 (72%), Gaps = 8/548 (1%)
Strand=Plus/Minus
Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051
||||| || || ||||| || || || || ||||||||||| || | || ||||||||
Sbjct 551782 GCTATTGGAATTGATTTGGGTACTACCTACAGTTGTGTTGGCGTGTTCCAGCATGGTAAA 551723
Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111
||||||||||||||||| |||||||| || | || || ||| ||||||| |||||||
Sbjct 551722 GTTGAAATTATTGCCAACGATCAAGGGAATCGTACCACGCCAAGTTATGTTGCTTTCACC 551663
Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAAT 550171
|| || || | | |||| ||||| |||||| |||||| | |||||| |||
Sbjct 551662 GATACCGAGCGACTGATTGGAGATGCGGCAAAAAATCAAGTTGCGTTGAATCCTCATAAT 551603
Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCA 550231
|| |||||||||| || || | || || | | ||| ||||| | | || ||| |
Sbjct 551602 ACAGTTTTTGATGCGAAGCGACTCATCGGTCGTCGATTTGATGATGCTGCGGTGCAGTCT 551543
Query 550232 GATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGA---AAACCTTATATTGAA 550288
|||||||| |||||||| ||| || || | || | |||| |||||| | ||| ||
Sbjct 551542 GATATGAAACATTGGCCATTCAAAGTTATCAACG---ATGGATCGAAACCTAAAATTCAA 551486
Query 550289 G-CTACTCATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTT 550347
| | | | | |||| || |||| |||| ||| |||| ||||||| ||
Sbjct 551485 GTCGAAT-ACAAAGGCGAGTCGAAGTCATTTACACCCGAAGAAATCAGTGCTATGGTGTT 551427
Query 550348 AATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAAT 550407
| |||| ||||| |||| ||| |||| | | || || |||| |||||| |||||
Sbjct 551426 AGTGAAGATGAAGGAAACTGCCGAAGCTTATTTGGGAAAAACTGTTAAGGATGCCGTAAT 551367
Query 550408 AACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTAT 550467
||||| || ||||||||||| || || || ||||| || || ||||| |||||| ||
Sbjct 551366 TACTGTTCCGGCATATTTTAACGATTCTCAGCGTCAGGCGACCAAAGACGCTGGAACGAT 551307
Query 550468 TGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGG 550527
| |||| | |||||| | ||||| ||||| ||||| || || |||||| |||| |||||
Sbjct 551306 TTCTGGTTTGAATGTTTTGCGTATCATCAACGAACCAACAGCGGCTGCAATTGCTTATGG 551247
Query 550528 ACTTGATA 550535
||||||||
Sbjct 551246 ACTTGATA 551239
>seq2371
Length=372962
Score = 131 bits (144), Expect = 1e-24
Identities = 138/182 (76%), Gaps = 0/182 (0%)
Strand=Plus/Plus
Query 550322 CCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTT 550381
|| ||| |||||||| | |||||||| ||||||||||| ||| ||| |||| | |
Sbjct 121225 CCCGAAGAAATTTCAGCGATGGTTTTGTTGAAAATGAAAGAAATTGCCGAAGCTTATTTG 121284
Query 550382 GGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGT 550441
|| ||||||| | |||| || | || || || || ||||| || || ||||||||
Sbjct 121285 GGCAAAGAAGTGAAAAATGCCGTCGTCACCGTTCCCGCTTATTTCAACGATGCACAACGT 121344
Query 550442 CAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAA 550501
|||||||| |||||||| || |||||||| ||||||||| |||| || ||||| |||
Sbjct 121345 CAAGCTACCAAAGATGCGGGCACCATTGCTGGTCTTAATGTTGTTCGAATCATCAACGAA 121404
Query 550502 CC 550503
||
Sbjct 121405 CC 121406
Score = 100 bits (110), Expect = 2e-15
Identities = 117/158 (74%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 552432 GTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGT 552491
||||| |||||| |||| ||||| ||| || | | || ||||| || ||| |||||
Sbjct 122374 GTTACTATTCAAGTTTTCGAAGGCGAACGACCAATGACCAAAGACAACCATCTTCTTGGG 122433
Query 552492 ACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACT 552551
| || || | || || ||||| ||||| ||||| ||||| ||||||||||||||
Sbjct 122434 AAATTCGATCTGACCGGCATACCTCCGGCTCCGCGTGGGGTACCACAAATTGAAGTTACA 122493
Query 552552 TTCGATATCGATGCCAATGGAATTTTGAATGTGACTGC 552589
||||||||||| | || || |||||| | || || ||
Sbjct 122494 TTCGATATCGACGTGAACGGCATTTTGCACGTCACCGC 122531
>seq1187
Length=25466
Score = 113 bits (124), Expect = 4e-19
Identities = 111/141 (79%), Gaps = 2/141 (1%)
Strand=Plus/Minus
Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394
|| |||||||| || | ||||||||| || ||||||||||| ||||| || ||||| |
Sbjct 22124 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCCTTATCCTGTATTTTGCCT 22065
Query 563395 TTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACCAGTAAG 563453
||||| ||| |||||||||| || ||| ||| | || | ||||| ||||||||
Sbjct 22064 TTTACATTCTCTATTGTATCAGATGGTTCTAC-TTCCAATGTTATTGTTTTTCCAGTAAG 22006
Query 563454 AGTTTTAACGAAAATTTGCAT 563474
||| |||||||||||||||||
Sbjct 22005 AGTCTTAACGAAAATTTGCAT 21985
Score = 98.7 bits (108), Expect = 8e-15
Identities = 108/141 (77%), Gaps = 2/141 (1%)
Strand=Plus/Minus
Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394
|| |||||||| || | ||||||||| || ||||||||||||||||| || ||||| |
Sbjct 20990 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCCTGTATTTTCCCT 20931
Query 563395 TTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAACAGTTTTACCAGTAAG 563453
|| || ||||||||||||| || | || ||| | || | ||||| ||||| ||
Sbjct 20930 TTCACATTTTCAATTGTATCAG-ATGGTTCCACTTCCAATGTGATGGTTTTGCCAGTGAG 20872
Query 563454 AGTTTTAACGAAAATTTGCAT 563474
|| ||||| |||||||||||
Sbjct 20871 GGTCTTAACAAAAATTTGCAT 20851
Score = 98.7 bits (108), Expect = 8e-15
Identities = 108/141 (77%), Gaps = 2/141 (1%)
Strand=Plus/Minus
Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394
|| |||||||| || | ||||||||| || ||||||||||||||||| || ||||| |
Sbjct 21273 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCCTGTATTTTCCCT 21214
Query 563395 TTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAACAGTTTTACCAGTAAG 563453
|| || ||||||||||||| || | || ||| | || | ||||| ||||| ||
Sbjct 21213 TTCACATTTTCAATTGTATCAG-ATGGTTCCACTTCCAATGTGATGGTTTTGCCAGTGAG 21155
Query 563454 AGTTTTAACGAAAATTTGCAT 563474
|| ||||| |||||||||||
Sbjct 21154 GGTCTTAACAAAAATTTGCAT 21134
Score = 98.7 bits (108), Expect = 8e-15
Identities = 108/141 (77%), Gaps = 2/141 (1%)
Strand=Plus/Minus
Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394
|| |||||||| || | ||||||||| || ||||||||||||||||| || ||||| |
Sbjct 21556 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCCTGTATTTTCCCT 21497
Query 563395 TTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAACAGTTTTACCAGTAAG 563453
|| || ||||||||||||| || | || ||| | || | ||||| ||||| ||
Sbjct 21496 TTCACATTTTCAATTGTATCAG-ATGGTTCCACTTCCAATGTGATGGTTTTGCCAGTGAG 21438
Query 563454 AGTTTTAACGAAAATTTGCAT 563474
|| ||||| |||||||||||
Sbjct 21437 GGTCTTAACAAAAATTTGCAT 21417
Score = 89.7 bits (98), Expect = 4e-12
Identities = 106/141 (75%), Gaps = 2/141 (1%)
Strand=Plus/Minus
Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394
|| ||||| || | | ||||||||| || ||||||||||||||||| || ||||| |
Sbjct 22407 CCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCCTGTATTTTCCCT 22348
Query 563395 TTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAACAGTTTTACCAGTAAG 563453
|| || ||||||||||||| || | || ||| | || | ||||| ||||| ||
Sbjct 22347 TTCACATTTTCAATTGTATCAG-ATGGTTCCACTTCCAATGTGATGGTTTTGCCAGTGAG 22289
Query 563454 AGTTTTAACGAAAATTTGCAT 563474
|| ||||| |||||||||||
Sbjct 22288 GGTCTTAACAAAAATTTGCAT 22268
Score = 86.0 bits (94), Expect = 5e-11
Identities = 105/141 (74%), Gaps = 2/141 (1%)
Strand=Plus/Minus
Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394
|| |||||||| | | ||| ||||| || ||||||||||| ||||| || ||||| |
Sbjct 21839 CCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTCCCT 21780
Query 563395 TTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAACAGTTTTACCAGTAAG 563453
|| || ||||||||||||| || | || ||| | || | ||||| ||||| ||
Sbjct 21779 TTCACATTTTCAATTGTATCAG-ATGGTTCCACTTCCAATGTGATGGTTTTGCCAGTGAG 21721
Query 563454 AGTTTTAACGAAAATTTGCAT 563474
|| ||||| |||||||||||
Sbjct 21720 GGTCTTAACAAAAATTTGCAT 21700
>seq827
Length=57960
Score = 105 bits (116), Expect = 5e-17
Identities = 113/147 (77%), Gaps = 2/147 (1%)
Strand=Plus/Plus
Query 563329 TGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATT 563388
|| || || |||||||| | | ||| ||||| || |||||||| |||||||||||||||
Sbjct 30492 TGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATT 30551
Query 563389 TTTTGTTTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACC 563447
|| ||| || || |||||||||| | ||| ||| | ||| | ||||| ||
Sbjct 30552 TTGCCTTTCACATTTTCTATTGTATCAGATAGTTCTAC-TTCCAAAGTTATTGTTTTTCC 30610
Query 563448 AGTAAGAGTTTTAACGAAAATTTGCAT 563474
||||||||| |||||||||||||||||
Sbjct 30611 AGTAAGAGTCTTAACGAAAATTTGCAT 30637
Score = 105 bits (116), Expect = 5e-17
Identities = 113/147 (77%), Gaps = 2/147 (1%)
Strand=Plus/Plus
Query 563329 TGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATT 563388
|| || || |||||||| | | ||| ||||| || |||||||| |||||||||||||||
Sbjct 30774 TGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATT 30833
Query 563389 TTTTGTTTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACC 563447
|| ||| || || |||||||||| || ||| ||| | ||| | ||||| ||
Sbjct 30834 TTGCCTTTCACATTTTCTATTGTATCAGATGGTTCTAC-TTCCAAAGTTATTGTTTTTCC 30892
Query 563448 AGTAAGAGTTTTAACGAAAATTTGCAT 563474
|||||| || |||||||||||||||||
Sbjct 30893 AGTAAGGGTCTTAACGAAAATTTGCAT 30919
Score = 104 bits (114), Expect = 2e-16
Identities = 111/144 (77%), Gaps = 2/144 (1%)
Strand=Plus/Plus
Query 563332 TTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTT 563391
|| || |||||||| | | ||| ||||| || |||||||| |||||||||||||||||
Sbjct 30213 TTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATTTTG 30272
Query 563392 TGTTTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACCAGT 563450
||| || || |||||||||| | ||| ||| | ||| | ||||| |||||
Sbjct 30273 CCTTTCACATTTTCTATTGTATCAGATAGTTCTAC-TTCCAAAGTTATTGTTTTTCCAGT 30331
Query 563451 AAGAGTTTTAACGAAAATTTGCAT 563474
|||||| |||||||||||||||||
Sbjct 30332 AAGAGTCTTAACGAAAATTTGCAT 30355
Score = 89.7 bits (98), Expect = 4e-12
Identities = 106/141 (75%), Gaps = 2/141 (1%)
Strand=Plus/Plus
Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394
|| ||||| || | | ||||||||| || ||||||||||||||||| || ||||| |
Sbjct 55492 CCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCCTGTATTTTCCCT 55551
Query 563395 TTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAACAGTTTTACCAGTAAG 563453
|| || ||||||||||||| || | || ||| | || | ||||| ||||| ||
Sbjct 55552 TTCACATTTTCAATTGTATCAG-ATGGTTCCACTTCCAATGTGATGGTTTTGCCAGTGAG 55610
Query 563454 AGTTTTAACGAAAATTTGCAT 563474
|| ||||| |||||||||||
Sbjct 55611 GGTCTTAACAAAAATTTGCAT 55631
>seq319
Length=111798
Score = 100 bits (110), Expect = 2e-15
Identities = 122/164 (74%), Gaps = 2/164 (1%)
Strand=Plus/Minus
Query 370652 TGCAACTGATGATGAAATTAAAAAAGCATACAAAAAACTAGCAATGAAATATCATCCTGA 370711
||| || || |||||||| |||||||| || || | ||| ||||||||||||||||
Sbjct 76727 TGCCACGGAAGATGAAATCAAAAAAGCTTATCGGAAGATGGCATTGAAATATCATCCTGA 76668
Query 370712 TAGAAACAAAAGTCCTGATGCTGAAGAAAAGTTTaaaaaaaTTAGCA-ATGCACATGGTA 370770
| |||||||| ||||| || ||| ||||| ||| | ||| ||| | ||| | | |
Sbjct 76667 CAAGAACAAAAGCCCTGACGCAGAAAGCAAGTTCAAAGAGATT-GCAGAAGCATACGATG 76609
Query 370771 TTCTTTCTGATCCTGAAAAGAAACAAACTTATGATAGATTTGGT 370814
|||| |||| || |||||||| ||| || |||| |||||||
Sbjct 76608 TTCTGAGTGATGCTAAAAAGAAAGAAATATACGATAAATTTGGT 76565
>seq378
Length=398
Score = 98.7 bits (108), Expect = 8e-15
Identities = 108/141 (77%), Gaps = 2/141 (1%)
Strand=Plus/Minus
Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394
|| ||||| || | | ||||||||| || ||||||||||| ||||| || ||||| |
Sbjct 254 CCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCCTTATCCTGTATTTTGCCT 195
Query 563395 TTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACCAGTAAG 563453
||||| ||| |||||||||| || ||| ||| | || | ||||| || |||||
Sbjct 194 TTTACATTCTCTATTGTATCAGATGGTTCTAC-TTCCAAGGTGATCGTTTTGCCGGTAAG 136
Query 563454 AGTTTTAACGAAAATTTGCAT 563474
||| |||||||||||||||||
Sbjct 135 AGTCTTAACGAAAATTTGCAT 115
>seq11
Length=460
Score = 95.1 bits (104), Expect = 1e-13
Identities = 109/144 (76%), Gaps = 2/144 (1%)
Strand=Plus/Minus
Query 563332 TTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTT 563391
|| || ||||| || | | ||| ||||| || ||||||||||| ||||| || |||||
Sbjct 202 TTACCAGCAAATATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTG 143
Query 563392 TGTTTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACCAGT 563450
|||||| ||| |||||||||| || ||| ||| | || | ||||| || ||
Sbjct 142 CCTTTTACATTCTCTATTGTATCAGATGGTTCTAC-TTCCAAGGTGATCGTTTTGCCGGT 84
Query 563451 AAGAGTTTTAACGAAAATTTGCAT 563474
|||||| |||||||||||||||||
Sbjct 83 AAGAGTCTTAACGAAAATTTGCAT 60
>seq2382
Length=364334
Score = 93.3 bits (102), Expect = 3e-13
Identities = 144/206 (70%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 367540 GAACGTATTGGAAGATGGATTGACGTAAAAAATGAATATAAAACAATGGATACTAATTTC 367599
||||| |||| ||||||| || | |||||||| |||||||| | || | | ||||
Sbjct 313454 GAACGGCTTGGTCGATGGATAGATTTTAAAAATGACTATAAAACTTTATATCCGAGTTTC 313513
Query 367600 ATGGAATCTGTTATTTGGGCATTTAAACAATTATACGAACGCGGTATGATTTTTGAAGGT 367659
||||||||||| |||| ||| ||||| | || | ||| | | | ||||
Sbjct 313514 ATGGAATCTGTATGGTGGGTATTCAAACAGCTGTATAACAAAGGTCTTGTCTACAGAGGT 313573
Query 367660 TATAAAGTAATGCCATATTCAACTGGTTGTAATACTGCTTTGTCACATTTTGAAGCCAAA 367719
||||| ||||||| ||| |||| ||| ||| | |||||| |||||||| | |
Sbjct 313574 GTAAAAGTGATGCCATTTTCTACTGCTTGCGGGACTCCATTGTCAAATTTTGAATCTGGA 313633
Query 367720 CAAAATTATCGAGAAGTAGTTGATCC 367745
|||||||| |||||| |||||||
Sbjct 313634 CAAAATTACAAAGAAGTCATTGATCC 313659
>seq2465
Length=325902
Score = 91.5 bits (100), Expect = 1e-12
Identities = 109/146 (75%), Gaps = 4/146 (3%)
Strand=Plus/Plus
Query 563332 TTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTT 563391
|| || ||||| || | ||||||||||||||||||||| ||||| ||||| ||||||||
Sbjct 17878 TTACCTGCAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAATTTTA 17937
Query 563392 TGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA--TTCGAGAGTAACAGTTTTACCAG 563449
||| || || || || || || || || ||| || || | |||||| ||||
Sbjct 17938 CTTTTAACATTTTCGATGGTGTC--TGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAG 17995
Query 563450 TAAGAGTTTTAACGAAAATTTGCATA 563475
|||| || || ||||| || ||||||
Sbjct 17996 TAAGTGTCTTCACGAATATCTGCATA 18021
Score = 87.8 bits (96), Expect = 1e-11
Identities = 106/142 (75%), Gaps = 2/142 (1%)
Strand=Plus/Plus
Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394
|| ||||| || | || |||||||||||| ||||| ||||| |||||||||||||| |
Sbjct 17203 CCAGCAAATATCAATCGTTGCTGATCAGGCGGAATGCCTTCCTTATCTTGAATTTTACTT 17262
Query 563395 TTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACCAGTAAG 563453
|| || ||||| ||||||| || ||| ||| | || | ||||| ||||| |
Sbjct 17263 TTCACATTTTCAATCGTATCAGATGGCTCTAC-TTCCAATGTGATTGTTTTTCCAGTTAA 17321
Query 563454 AGTTTTAACGAAAATTTGCATA 563475
||||| || ||||| ||||||
Sbjct 17322 TGTTTTCACAAAAATCTGCATA 17343
>seq2446
Length=334761
Score = 86.0 bits (94), Expect = 5e-11
Identities = 73/90 (81%), Gaps = 0/90 (0%)
Strand=Plus/Plus
Query 552507 GGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCC 552566
||||| ||||| || ||||||||||| || ||||| ||||||||||| |||||||||||
Sbjct 75957 GGTATACCTCCGGCCCCTCGTGGAGTTCCACAAATAGAAGTTACTTTTGATATCGATGCA 76016
Query 552567 AATGGAATTTTGAATGTGACTGCTTGTGAT 552596
||||| || | |||| | |||| | |||
Sbjct 76017 AATGGTATAGTTCATGTCAGTGCTCGAGAT 76046
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 4029138985889810
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