Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20nelsoni_20[genbank_20GCA_5F001447455.1_202015-11-24]
2,969 sequences; 47,436,005 total letters
Query= NC_018875.1
Length=119082
Score E
Sequences producing significant alignments: (Bits) Value
seq1187 102 6e-17
seq827 96.9 3e-15
seq1474 89.7 4e-13
seq2465 87.8 1e-12
seq2680 84.2 2e-11
>seq1187
Length=25466
Score = 102 bits (112), Expect = 6e-17
Identities = 110/146 (75%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 48622 GCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCT 48681
|| |||| ||||| || || ||||||||||||| || | ||| || ||||| |||||
Sbjct 20713 GCATACCAGCAAAAATAAGCCGCTGTTGATCCGGTGGGATGCCTTCTTTGTCTTGAATCT 20654
Query 48682 TTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCG 48741
| ||||||| | | | ||||||| ||| || || | |||||||||||||| |
Sbjct 20653 TGCTTTTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTG 20594
Query 48742 TCAAAGTTTTTACAAAAATCTGCATC 48767
|||| ||||| ||||| |||||||||
Sbjct 20593 TCAACGTTTTCACAAATATCTGCATC 20568
>seq827
Length=57960
Score = 96.9 bits (106), Expect = 3e-15
Identities = 109/146 (75%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 48622 GCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCT 48681
|| |||| ||||| || || ||||||||||||| || | ||| || ||||| |||||
Sbjct 31411 GCATACCAGCAAAAATAAGCCGCTGTTGATCCGGTGGGATGCCTTCTTTGTCTTGAATCT 31470
Query 48682 TTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCG 48741
| ||||||| | | | ||||| | ||| || || | |||||||||||||| |
Sbjct 31471 TGCTTTTTACATTTTCAATTGTATCTGATGGCTCAACTTCAAGTGTAATCGTTTTTCCTG 31530
Query 48742 TCAAAGTTTTTACAAAAATCTGCATC 48767
|||| ||||| ||||| |||||||||
Sbjct 31531 TCAACGTTTTCACAAATATCTGCATC 31556
Score = 84.2 bits (92), Expect = 2e-11
Identities = 105/144 (73%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 48623 CTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTT 48682
|||||| ||||| ||||| ||||||||||| | |||| ||||| || || ||| ||
Sbjct 31744 CTTACCAGCAAAAATCAGACGCTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTT 31803
Query 48683 TTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGT 48742
||| ||| | | || ||| | | ||||| |||| ||||| ||||| || ||
Sbjct 31804 ACCTTTCACATTTTCAATTGAGTCTAAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGT 31863
Query 48743 CAAAGTTTTTACAAAAATCTGCAT 48766
|| |||||| ||||| ||||||||
Sbjct 31864 CAGAGTTTTCACAAATATCTGCAT 31887
>seq1474
Length=412914
Score = 89.7 bits (98), Expect = 4e-13
Identities = 133/189 (70%), Gaps = 0/189 (0%)
Strand=Plus/Plus
Query 9075 GATTTGTTCACAAATTAATTGAGCAATCCTGTCCCCCTTATTCACGACAAAGTCTGTGTC 9134
|||| |||||||||| | ||||||||| | || || |||||| ||| ||| |||
Sbjct 126569 GATTCGTTCACAAATCAGTTGAGCAATTCGATCACCACGTTTCACGTGAAAATCTTGGTC 126628
Query 9135 GGAATGATTGAACAGCACCACTCCCACGTTACCCCTGTAATCCTCATCGATCACACCAGC 9194
| | |||||| | | ||||| || || ||||||||||| |||| | || || ||
Sbjct 126629 GCCAAAATTGAAAACAATTACTCCAACATTGCCCCTGTAATCTGCATCTACAACGCCCGC 126688
Query 9195 ACCCACGTCGATGAAGTGCTTGACCGCTAGTCCAGAGCGGGGCGCGATTCGACCGTAGCA 9254
|| | |||||| ||| || | || | ||||| || || || || |||||||||||
Sbjct 126689 GCCGATGTCGATACCGTGTTTTAAAGCCAAGCCAGATCGAGGTGCAATGCGACCGTAGCA 126748
Query 9255 TCCCACCGG 9263
|| || ||
Sbjct 126749 GCCGACAGG 126757
>seq2465
Length=325902
Score = 87.8 bits (96), Expect = 1e-12
Identities = 105/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683
||||| |||||||||| |||||| ||||| | |||| ||| || ||||| ||| ||
Sbjct 16914 TTACCAGCAAATATCAATCGCTGCTGATCAGGTGGAATGCCTTCTTTGTCTTGAATTTTG 16973
Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743
||| ||| | | | || || | ||| ||||||| || || |||||||| ||
Sbjct 16974 CTTTTCACATTTTCAATCGTGTCCGAAGGCTCTACCTCCAATGTGATTGTTTTTCCAGTT 17033
Query 48744 AAAGTTTTTACAAAAATCTGCAT 48766
|| ||||| ||||||||||||||
Sbjct 17034 AATGTTTTCACAAAAATCTGCAT 17056
>seq2680
Length=639
Score = 84.2 bits (92), Expect = 2e-11
Identities = 99/134 (74%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|| || | ||||||||| || ||| || || || || |||||||| | || | ||
Sbjct 139 AGACGAAGCACCAAATGAAGGGTGGATTCCTTCTGGATGTTGTAATCTGCCAGGGTGCGG 80
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668
| || || | |||||| |||||||| ||||| |||||||| |||| ||| | ||||||
Sbjct 79 CCATCCTCAAGCTGCTTTCCGGCAAAGATCAGACGCTGTTGGTCCGGGGGGATTCCCTCC 20
Query 48669 TTGTCGCTAATCTT 48682
||||| ||||||
Sbjct 19 TTGTCCTGAATCTT 6
Score = 82.4 bits (90), Expect = 6e-11
Identities = 149/218 (68%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|| || | ||||||||| || ||| || || || || ||||| || | || | ||
Sbjct 367 AGACGAAGCACCAAATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCTGCCAGGGTACGG 308
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668
| || || | |||||| |||||||| || || | ||| || || | || | ||||||
Sbjct 307 CCATCCTCAAGCTGCTTTCCGGCAAAGATAAGCCTCTGCTGGTCTGGTGGGATACCCTCC 248
Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728
||||| || || || ||| | | | | ||||| ||||||||||| ||
Sbjct 247 TTGTCCTGGATTTTAGCCTTCACATTATCGATGGTGTCTGAGCTCTCCACCTCCAAGGTG 188
Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| || ||||| ||||| || || ||||| ||||||||
Sbjct 187 ATGGTCTTTCCGGTCAAGGTCTTGACAAAGATCTGCAT 150
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 380923815891987
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |