Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20nelsoni_20[genbank_20GCA_5F001447455.1_202015-11-24]
2,969 sequences; 47,436,005 total letters
Query= NC_020104.1
Length=1021348
Score E
Sequences producing significant alignments: (Bits) Value
seq2516 336 1e-86
seq2371 113 3e-19
seq827 109 4e-18
seq11 109 4e-18
seq1187 107 1e-17
seq378 102 5e-16
seq2680 96.9 2e-14
seq2382 95.1 8e-14
seq2446 91.5 1e-12
seq319 89.7 3e-12
>seq2516
Length=768920
Score = 336 bits (372), Expect = 1e-86
Identities = 444/611 (73%), Gaps = 11/611 (2%)
Strand=Plus/Minus
Query 474317 ATGTCCAGAATTGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGG 474376
||||| | | ||| ||||| |||||||| || ||||| ||||||||||| | || |
Sbjct 551794 ATGTCGAAGAATGCTATTGGAATTGATTTGGGTACTACCTACAGTTGTGTTGGCGTGTTC 551735
Query 474377 CAAAATGGTAAAGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATAT 474436
|| |||||||||| ||||| |||||||| || ||||| ||| | || || ||| |||
Sbjct 551734 CAGCATGGTAAAGTTGAAATTATTGCCAACGATCAAGGGAATCGTACCACGCCAAGTTAT 551675
Query 474437 GTTTCTTTTACTGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCT 474496
||| |||| || || || || | || ||||||||||| || ||| |||||| ||| |
Sbjct 551674 GTTGCTTTCACCGATACCGAGCGACTGATTGGAGATGCGGCAAAAAATCAAGTTGCGTTG 551615
Query 474497 AATCCTGTTAATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACC 474556
|||||| |||||| |||||||||| || || | || |||||| ||||||||| |
Sbjct 551614 AATCCTCATAATACAGTTTTTGATGCGAAGCGACTCATCGGTCGTCGATTTGATGATGCT 551555
Query 474557 ACTGTCCAATCTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCA 474616
| || || ||||||||| |||||||| || || || || || | ||| |||||
Sbjct 551554 GCGGTGCAGTCTGATATGAAACATTGGCCATTCAAAGTTATCAACGATGGATCGAAACCT 551495
Query 474617 TATATAGAAG--CAATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTT 474674
| || ||| |||||| ||| || | || |||| |||| ||| |||| |
Sbjct 551494 AAAATTCAAGTCGAATACA--AAGGCGAGTCGAAGTCATTTACACCCGAAGAAATCAGTG 551437
Query 474675 CAATGGTTTTAGCCAAAATGAAACAAACCGC--GAGCTCATATCTTGGACAAGAAGTAAC 474732
| ||||| |||| || ||||| |||| || |||| ||| | ||| || || |
Sbjct 551436 CTATGGTGTTAGTGAAGATGAAGGAAACTGCCGAAGCT--TATTTGGGAAAAACTGTTAA 551379
Query 474733 TGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGA 474792
||||| |||||||||||||| ||||||||||| |||||||| ||||| || || |||||
Sbjct 551378 GGATGCCGTAATTACTGTTCCGGCATATTTTAACGATTCTCAGCGTCAGGCGACCAAAGA 551319
Query 474793 TGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGC 474852
|| |||| ||| | ||| | |||||||| ||||| || || ||||||||||| || ||
Sbjct 551318 CGCTGGAACGATTTCTGGTTTGAATGTTTTGCGTATCATCAACGAACCAACAGCGGCTGC 551259
Query 474853 ACTTGCTTATGGTCTTGATAAGAATTCTGACAAAGAAGTAAATGTTTTAATCTTTGA--- 474909
| |||||||||| ||||||| || || | ||| ||||||| | || |||||
Sbjct 551258 AATTGCTTATGGACTTGATAGAAAGGGTGGCGGTGAACGAAATGTTCTGATATTTGACCT 551199
Query 474910 TTGTGGAGGTA 474920
| |||| ||||
Sbjct 551198 TGGTGGTGGTA 551188
>seq2371
Length=372962
Score = 113 bits (124), Expect = 3e-19
Identities = 149/205 (73%), Gaps = 4/205 (2%)
Strand=Plus/Plus
Query 474638 GGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAAAATGAAA 474697
||||||| ||| || | || ||| ||||||| | |||||||| |||||||||
Sbjct 121204 GGTGAAAAGAAATTGTTCACTCCCGAAGAAATTTCAGCGATGGTTTTGTTGAAAATGAAA 121263
Query 474698 CAAACCGCG--AGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATTACTGTTCCAG 474755
||| || |||| ||| | || ||||||| | |||| || | || ||||| |
Sbjct 121264 GAAATTGCCGAAGCT--TATTTGGGCAAAGAAGTGAAAAATGCCGTCGTCACCGTTCCCG 121321
Query 474756 CATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTA 474815
| ||||| || ||| | ||||||||||| || ||||||||||| | ||||| |||||||
Sbjct 121322 CTTATTTCAACGATGCACAACGTCAAGCTACCAAAGATGCGGGCACCATTGCTGGTCTTA 121381
Query 474816 ATGTTTTACGTATTATTAATGAACC 474840
||||| | || || || || |||||
Sbjct 121382 ATGTTGTTCGAATCATCAACGAACC 121406
>seq827
Length=57960
Score = 109 bits (120), Expect = 4e-18
Identities = 110/143 (77%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 480627 TGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATC 480686
||||| ||||||||||| | |||||||||||| || |||||||| || || ||||||||
Sbjct 30492 TGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATT 30551
Query 480687 TTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCG 480746
|| ||| ||| ||| || ||||||| || ||| | || || ||||| ||
Sbjct 30552 TTGCCTTTCACATTTTCTATTGTATCAGATAGTTCTACTTCCAAAGTTATTGTTTTTCCA 30611
Query 480747 GTGAGAGTCTTAACGAAAATTTG 480769
|| ||||||||||||||||||||
Sbjct 30612 GTAAGAGTCTTAACGAAAATTTG 30634
Score = 109 bits (120), Expect = 4e-18
Identities = 112/144 (78%), Gaps = 2/144 (1%)
Strand=Plus/Plus
Query 480627 TGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATC 480686
||||| ||||||||||| | |||||||||||| || |||||||| || || ||||||||
Sbjct 30774 TGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATT 30833
Query 480687 TTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACC 480745
|| ||| ||| ||| || ||||||| || | | || ||| || || ||||| ||
Sbjct 30834 TTGCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAA-AGTTATTGTTTTTCC 30892
Query 480746 GGTGAGAGTCTTAACGAAAATTTG 480769
|| || |||||||||||||||||
Sbjct 30893 AGTAAGGGTCTTAACGAAAATTTG 30916
Score = 107 bits (118), Expect = 1e-17
Identities = 108/138 (78%), Gaps = 2/138 (1%)
Strand=Plus/Plus
Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692
||||||||||| ||||| |||||||| ||||||||||| ||||| ||||||||||| |
Sbjct 29629 CCAGCAAAAATCAGACGCTGTTGATCTGGAGGAATTCCCTCCTTATCTTGAATCTTCCCT 29688
Query 480693 TTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAG 480751
|| ||| |||| |||||||| || | | || ||| || || || || || || ||
Sbjct 29689 TTCACATTCTCAACAGTATCAGATGGTTCCACTTCCAA-CGTGATGGTCTTCCCAGTTAG 29747
Query 480752 AGTCTTAACGAAAATTTG 480769
|||||||| ||||||||
Sbjct 29748 GGTCTTAACAAAAATTTG 29765
Score = 105 bits (116), Expect = 4e-17
Identities = 108/141 (77%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 480629 CTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTT 480688
||| ||||||||||| | |||||||||||| || |||||||| || || |||||||| ||
Sbjct 30212 CTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATTTT 30271
Query 480689 TTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGT 480748
||| ||| ||| || ||||||| || ||| | || || ||||| || ||
Sbjct 30272 GCCTTTCACATTTTCTATTGTATCAGATAGTTCTACTTCCAAAGTTATTGTTTTTCCAGT 30331
Query 480749 GAGAGTCTTAACGAAAATTTG 480769
||||||||||||||||||||
Sbjct 30332 AAGAGTCTTAACGAAAATTTG 30352
Score = 93.3 bits (102), Expect = 3e-13
Identities = 105/138 (76%), Gaps = 2/138 (1%)
Strand=Plus/Plus
Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692
|||||||||||||| || |||||||| || || || ||||| |||||||||||||| |
Sbjct 31416 CCAGCAAAAATAAGCCGCTGTTGATCCGGTGGGATGCCTTCTTTGTCTTGAATCTTGCTT 31475
Query 480693 TTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAG 480751
|| ||| |||||| ||||| | || | || |||||| ||||| ||||| || || |
Sbjct 31476 TTTACATTTTCAATTGTATCTGATGGCTCAA-CTTCAAGTGTAATCGTTTTTCCTGTCAA 31534
Query 480752 AGTCTTAACGAAAATTTG 480769
|| || || || || ||
Sbjct 31535 CGTTTTCACAAATATCTG 31552
Score = 93.3 bits (102), Expect = 3e-13
Identities = 105/138 (76%), Gaps = 2/138 (1%)
Strand=Plus/Plus
Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692
|||||||| || | |||||| ||||| || ||||||||||| || || || || || |
Sbjct 55492 CCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCCTGTATTTTCCCT 55551
Query 480693 TTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAG 480751
|| ||| |||||| ||||||| || | | || ||| || || ||||| || |||||
Sbjct 55552 TTCACATTTTCAATTGTATCAGATGGTTCCACTTCCAA-TGTGATGGTTTTGCCAGTGAG 55610
Query 480752 AGTCTTAACGAAAATTTG 480769
|||||||| ||||||||
Sbjct 55611 GGTCTTAACAAAAATTTG 55628
>seq11
Length=460
Score = 109 bits (120), Expect = 4e-18
Identities = 111/142 (78%), Gaps = 2/142 (1%)
Strand=Plus/Minus
Query 480629 CTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTT 480688
||| |||||||| || | |||||||||||| || |||||||||||||| || || || ||
Sbjct 203 CTTACCAGCAAATATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTT 144
Query 480689 TTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGG 480747
||| ||| || || ||||||| || | | || ||||| | || ||||| ||||
Sbjct 143 GCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGG-TGATCGTTTTGCCGG 85
Query 480748 TGAGAGTCTTAACGAAAATTTG 480769
| ||||||||||||||||||||
Sbjct 84 TAAGAGTCTTAACGAAAATTTG 63
>seq1187
Length=25466
Score = 107 bits (118), Expect = 1e-17
Identities = 108/138 (78%), Gaps = 2/138 (1%)
Strand=Plus/Minus
Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692
||||||||||| | |||||||||||| || |||||||||||||| || || || || |
Sbjct 21839 CCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTCCCT 21780
Query 480693 TTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAG 480751
|| ||| |||||| ||||||| || | | || ||| || || ||||| || |||||
Sbjct 21779 TTCACATTTTCAATTGTATCAGATGGTTCCACTTCCAA-TGTGATGGTTTTGCCAGTGAG 21721
Query 480752 AGTCTTAACGAAAATTTG 480769
|||||||| ||||||||
Sbjct 21720 GGTCTTAACAAAAATTTG 21703
Score = 102 bits (112), Expect = 5e-16
Identities = 107/138 (78%), Gaps = 2/138 (1%)
Strand=Plus/Minus
Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692
||||||||||| |||||||| ||||| || ||||||||||| || || || || || |
Sbjct 20990 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCCTGTATTTTCCCT 20931
Query 480693 TTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAG 480751
|| ||| |||||| ||||||| || | | || ||| || || ||||| || |||||
Sbjct 20930 TTCACATTTTCAATTGTATCAGATGGTTCCACTTCCAA-TGTGATGGTTTTGCCAGTGAG 20872
Query 480752 AGTCTTAACGAAAATTTG 480769
|||||||| ||||||||
Sbjct 20871 GGTCTTAACAAAAATTTG 20854
Score = 102 bits (112), Expect = 5e-16
Identities = 107/138 (78%), Gaps = 2/138 (1%)
Strand=Plus/Minus
Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692
||||||||||| |||||||| ||||| || ||||||||||| || || || || || |
Sbjct 21273 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCCTGTATTTTCCCT 21214
Query 480693 TTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAG 480751
|| ||| |||||| ||||||| || | | || ||| || || ||||| || |||||
Sbjct 21213 TTCACATTTTCAATTGTATCAGATGGTTCCACTTCCAA-TGTGATGGTTTTGCCAGTGAG 21155
Query 480752 AGTCTTAACGAAAATTTG 480769
|||||||| ||||||||
Sbjct 21154 GGTCTTAACAAAAATTTG 21137
Score = 102 bits (112), Expect = 5e-16
Identities = 107/138 (78%), Gaps = 2/138 (1%)
Strand=Plus/Minus
Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692
||||||||||| |||||||| ||||| || ||||||||||| || || || || || |
Sbjct 21556 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCCTGTATTTTCCCT 21497
Query 480693 TTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAG 480751
|| ||| |||||| ||||||| || | | || ||| || || ||||| || |||||
Sbjct 21496 TTCACATTTTCAATTGTATCAGATGGTTCCACTTCCAA-TGTGATGGTTTTGCCAGTGAG 21438
Query 480752 AGTCTTAACGAAAATTTG 480769
|||||||| ||||||||
Sbjct 21437 GGTCTTAACAAAAATTTG 21420
Score = 102 bits (112), Expect = 5e-16
Identities = 107/138 (78%), Gaps = 2/138 (1%)
Strand=Plus/Minus
Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692
||||||||||| |||||||| ||||| || |||||||||||||| || || || || |
Sbjct 22124 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCCTTATCCTGTATTTTGCCT 22065
Query 480693 TTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAG 480751
|| ||| || || ||||||| || | | || ||| | || | ||||| || || ||
Sbjct 22064 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAATGTTATT-GTTTTTCCAGTAAG 22006
Query 480752 AGTCTTAACGAAAATTTG 480769
||||||||||||||||||
Sbjct 22005 AGTCTTAACGAAAATTTG 21988
Score = 93.3 bits (102), Expect = 3e-13
Identities = 105/138 (76%), Gaps = 2/138 (1%)
Strand=Plus/Minus
Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692
|||||||| || | |||||| ||||| || ||||||||||| || || || || || |
Sbjct 22407 CCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCCTGTATTTTCCCT 22348
Query 480693 TTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAG 480751
|| ||| |||||| ||||||| || | | || ||| || || ||||| || |||||
Sbjct 22347 TTCACATTTTCAATTGTATCAGATGGTTCCACTTCCAA-TGTGATGGTTTTGCCAGTGAG 22289
Query 480752 AGTCTTAACGAAAATTTG 480769
|||||||| ||||||||
Sbjct 22288 GGTCTTAACAAAAATTTG 22271
Score = 89.7 bits (98), Expect = 3e-12
Identities = 102/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692
|||||||||||||| || |||||||| || || || ||||| |||||||||||||| |
Sbjct 20708 CCAGCAAAAATAAGCCGCTGTTGATCCGGTGGGATGCCTTCTTTGTCTTGAATCTTGCTT 20649
Query 480693 TTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGA 480752
|| ||| |||||| ||||| | | | |||||| ||||| ||||| || || |
Sbjct 20648 TTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCAAC 20589
Query 480753 GTCTTAACGAAAATTTG 480769
|| || || || || ||
Sbjct 20588 GTTTTCACAAATATCTG 20572
>seq378
Length=398
Score = 102 bits (112), Expect = 5e-16
Identities = 107/138 (78%), Gaps = 2/138 (1%)
Strand=Plus/Minus
Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692
|||||||| || | |||||| ||||| || |||||||||||||| || || || || |
Sbjct 254 CCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCCTTATCCTGTATTTTGCCT 195
Query 480693 TTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAG 480751
|| ||| || || ||||||| || | | || ||||| | || ||||| ||||| ||
Sbjct 194 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGG-TGATCGTTTTGCCGGTAAG 136
Query 480752 AGTCTTAACGAAAATTTG 480769
||||||||||||||||||
Sbjct 135 AGTCTTAACGAAAATTTG 118
>seq2680
Length=639
Score = 96.9 bits (106), Expect = 2e-14
Identities = 155/220 (70%), Gaps = 2/220 (1%)
Strand=Plus/Minus
Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610
|||||||||||| ||||| ||||| ||| || || | ||| || || || || ||
Sbjct 599 ACGAAGACGGAGGACAAGGTGAAGGGTAGACTCCTTCTGGATATTGTAGTCTGCCAGGGT 540
Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670
| ||| || || ||||| || ||||| ||||| | || || || || ||||| ||
Sbjct 539 ACGCCCATCCTCGAGCTGCTTGCCGGCAAAGATAAGCCTCTGCTGGTCTGGTGGAATCCC 480
Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTG-TGTGAAGTTTCAA 480729
||||||||||||||||| || ||| ||||| || || | | | | | ||||
Sbjct 479 CTCCTTGTCTTGAATCTTGGCCTTCACATTGTCAATGGTGTCTGAGCTCTCCA-CCTCAA 421
Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
|||| || || || || || |||||||| || ||||| ||
Sbjct 420 GGGTGATGGTCTTCCCTGTAAGAGTCTTGACAAAAATCTG 381
>seq2382
Length=364334
Score = 95.1 bits (104), Expect = 8e-14
Identities = 163/232 (70%), Gaps = 5/232 (2%)
Strand=Plus/Plus
Query 296075 TTGGAAGATGGATTGATATTAATAATGAATATAAAACAATGGATAAAAATTTTATGGAAT 296134
|||| ||||||| ||| |||| ||||| |||||||| | || | ||| |||||||
Sbjct 313461 TTGGTCGATGGATAGATTTTAAAAATGACTATAAAACTTTATATCCGAGTTTCATGGAAT 313520
Query 296135 CTGTTATTTGGTCATTTAAACAACTTTATGA-AAAGGAAATGATTTTTGAAGGTTATAAA 296193
|||| ||| ||| ||||| || ||| | ||||| || | | |||| |||
Sbjct 313521 CTGTATGGTGGGTATTCAAACAGCTGTATAACAAAGGTCTTG-TCTACAGAGGTGTAAAA 313579
Query 296194 GTTATGCCTTATTCTACTGGTTGCAATACACCATTATCTCATTTTGAGGCAAAACAAAAT 296253
|| ||||| | |||||||| |||| || ||||| || ||||||| | |||||||
Sbjct 313580 GTGATGCCATTTTCTACTGCTTGCGGGACTCCATTGTCAAATTTTGAATCTGGACAAAAT 313639
Query 296254 TATAAAGAGATTATTGATCCATCT-GTTACTTGTTGTTTTGAAATTATTTCT 296304
|| ||||| | |||||||| || |||| | | |||| || || |||||
Sbjct 313640 TACAAAGAAGTCATTGATCCTGCTAGTTAGTAAT--TTTTTAATTTGTTTCT 313689
>seq2446
Length=334761
Score = 91.5 bits (100), Expect = 1e-12
Identities = 74/90 (82%), Gaps = 0/90 (0%)
Strand=Plus/Plus
Query 476090 GGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCA 476149
||||| ||||| || || | |||||||| ||||| ||||||||||||||||| ||||||
Sbjct 75957 GGTATACCTCCGGCCCCTCGTGGAGTTCCACAAATAGAAGTTACTTTTGATATCGATGCA 76016
Query 476150 AATGGTATTCTTAATGTTACTGCTTGTGAT 476179
|||||||| || |||| | |||| | |||
Sbjct 76017 AATGGTATAGTTCATGTCAGTGCTCGAGAT 76046
>seq319
Length=111798
Score = 89.7 bits (98), Expect = 3e-12
Identities = 118/164 (72%), Gaps = 0/164 (0%)
Strand=Plus/Minus
Query 299114 GAAGAAGAGATTAAAAAAGCTTATAAAAAATTAGCTATGAAATATCATCCTGACAGAAAT 299173
||||| || || |||||||||||| || | || |||||||||||||||||| ||
Sbjct 76720 GAAGATGAAATCAAAAAAGCTTATCGGAAGATGGCATTGAAATATCATCCTGACAAGAAC 76661
Query 299174 AAAAGTCCTGAAGCGGAAGAAAAGTTTaaaaaaaTAAGTCATGCTTATAGTATTCTTTCA 299233
||||| ||||| || ||| ||||| ||| | || | || || | ||||
Sbjct 76660 AAAAGCCCTGACGCAGAAAGCAAGTTCAAAGAGATTGCAGAAGCATACGATGTTCTGAGT 76601
Query 299234 GATCCAACCAAAAAAGAAGTATATGATAAATTTGGAGAAGAAGG 299277
||| | | || |||||| |||| ||||||||||| ||||||||
Sbjct 76600 GATGCTAAAAAGAAAGAAATATACGATAAATTTGGTGAAGAAGG 76557
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3268051845184412
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |