Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20nelsoni_20[genbank_20GCA_5F001447455.1_202015-11-24] 2,969 sequences; 47,436,005 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq2516 336 1e-86 seq2371 113 3e-19 seq827 109 4e-18 seq11 109 4e-18 seq1187 107 1e-17 seq378 102 5e-16 seq2680 96.9 2e-14 seq2382 95.1 8e-14 seq2446 91.5 1e-12 seq319 89.7 3e-12 >seq2516 Length=768920 Score = 336 bits (372), Expect = 1e-86 Identities = 444/611 (73%), Gaps = 11/611 (2%) Strand=Plus/Minus Query 474317 ATGTCCAGAATTGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGG 474376 ||||| | | ||| ||||| |||||||| || ||||| ||||||||||| | || | Sbjct 551794 ATGTCGAAGAATGCTATTGGAATTGATTTGGGTACTACCTACAGTTGTGTTGGCGTGTTC 551735 Query 474377 CAAAATGGTAAAGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATAT 474436 || |||||||||| ||||| |||||||| || ||||| ||| | || || ||| ||| Sbjct 551734 CAGCATGGTAAAGTTGAAATTATTGCCAACGATCAAGGGAATCGTACCACGCCAAGTTAT 551675 Query 474437 GTTTCTTTTACTGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCT 474496 ||| |||| || || || || | || ||||||||||| || ||| |||||| ||| | Sbjct 551674 GTTGCTTTCACCGATACCGAGCGACTGATTGGAGATGCGGCAAAAAATCAAGTTGCGTTG 551615 Query 474497 AATCCTGTTAATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACC 474556 |||||| |||||| |||||||||| || || | || |||||| ||||||||| | Sbjct 551614 AATCCTCATAATACAGTTTTTGATGCGAAGCGACTCATCGGTCGTCGATTTGATGATGCT 551555 Query 474557 ACTGTCCAATCTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCA 474616 | || || ||||||||| |||||||| || || || || || | ||| ||||| Sbjct 551554 GCGGTGCAGTCTGATATGAAACATTGGCCATTCAAAGTTATCAACGATGGATCGAAACCT 551495 Query 474617 TATATAGAAG--CAATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTT 474674 | || ||| |||||| ||| || | || |||| |||| ||| |||| | Sbjct 551494 AAAATTCAAGTCGAATACA--AAGGCGAGTCGAAGTCATTTACACCCGAAGAAATCAGTG 551437 Query 474675 CAATGGTTTTAGCCAAAATGAAACAAACCGC--GAGCTCATATCTTGGACAAGAAGTAAC 474732 | ||||| |||| || ||||| |||| || |||| ||| | ||| || || | Sbjct 551436 CTATGGTGTTAGTGAAGATGAAGGAAACTGCCGAAGCT--TATTTGGGAAAAACTGTTAA 551379 Query 474733 TGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGA 474792 ||||| |||||||||||||| ||||||||||| |||||||| ||||| || || ||||| Sbjct 551378 GGATGCCGTAATTACTGTTCCGGCATATTTTAACGATTCTCAGCGTCAGGCGACCAAAGA 551319 Query 474793 TGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGC 474852 || |||| ||| | ||| | |||||||| ||||| || || ||||||||||| || || Sbjct 551318 CGCTGGAACGATTTCTGGTTTGAATGTTTTGCGTATCATCAACGAACCAACAGCGGCTGC 551259 Query 474853 ACTTGCTTATGGTCTTGATAAGAATTCTGACAAAGAAGTAAATGTTTTAATCTTTGA--- 474909 | |||||||||| ||||||| || || | ||| ||||||| | || ||||| Sbjct 551258 AATTGCTTATGGACTTGATAGAAAGGGTGGCGGTGAACGAAATGTTCTGATATTTGACCT 551199 Query 474910 TTGTGGAGGTA 474920 | |||| |||| Sbjct 551198 TGGTGGTGGTA 551188 >seq2371 Length=372962 Score = 113 bits (124), Expect = 3e-19 Identities = 149/205 (73%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 474638 GGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAAAATGAAA 474697 ||||||| ||| || | || ||| ||||||| | |||||||| ||||||||| Sbjct 121204 GGTGAAAAGAAATTGTTCACTCCCGAAGAAATTTCAGCGATGGTTTTGTTGAAAATGAAA 121263 Query 474698 CAAACCGCG--AGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATTACTGTTCCAG 474755 ||| || |||| ||| | || ||||||| | |||| || | || ||||| | Sbjct 121264 GAAATTGCCGAAGCT--TATTTGGGCAAAGAAGTGAAAAATGCCGTCGTCACCGTTCCCG 121321 Query 474756 CATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTA 474815 | ||||| || ||| | ||||||||||| || ||||||||||| | ||||| ||||||| Sbjct 121322 CTTATTTCAACGATGCACAACGTCAAGCTACCAAAGATGCGGGCACCATTGCTGGTCTTA 121381 Query 474816 ATGTTTTACGTATTATTAATGAACC 474840 ||||| | || || || || ||||| Sbjct 121382 ATGTTGTTCGAATCATCAACGAACC 121406 >seq827 Length=57960 Score = 109 bits (120), Expect = 4e-18 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 480627 TGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATC 480686 ||||| ||||||||||| | |||||||||||| || |||||||| || || |||||||| Sbjct 30492 TGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATT 30551 Query 480687 TTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCG 480746 || ||| ||| ||| || ||||||| || ||| | || || ||||| || Sbjct 30552 TTGCCTTTCACATTTTCTATTGTATCAGATAGTTCTACTTCCAAAGTTATTGTTTTTCCA 30611 Query 480747 GTGAGAGTCTTAACGAAAATTTG 480769 || |||||||||||||||||||| Sbjct 30612 GTAAGAGTCTTAACGAAAATTTG 30634 Score = 109 bits (120), Expect = 4e-18 Identities = 112/144 (78%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 480627 TGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATC 480686 ||||| ||||||||||| | |||||||||||| || |||||||| || || |||||||| Sbjct 30774 TGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATT 30833 Query 480687 TTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACC 480745 || ||| ||| ||| || ||||||| || | | || ||| || || ||||| || Sbjct 30834 TTGCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAA-AGTTATTGTTTTTCC 30892 Query 480746 GGTGAGAGTCTTAACGAAAATTTG 480769 || || ||||||||||||||||| Sbjct 30893 AGTAAGGGTCTTAACGAAAATTTG 30916 Score = 107 bits (118), Expect = 1e-17 Identities = 108/138 (78%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692 ||||||||||| ||||| |||||||| ||||||||||| ||||| ||||||||||| | Sbjct 29629 CCAGCAAAAATCAGACGCTGTTGATCTGGAGGAATTCCCTCCTTATCTTGAATCTTCCCT 29688 Query 480693 TTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAG 480751 || ||| |||| |||||||| || | | || ||| || || || || || || || Sbjct 29689 TTCACATTCTCAACAGTATCAGATGGTTCCACTTCCAA-CGTGATGGTCTTCCCAGTTAG 29747 Query 480752 AGTCTTAACGAAAATTTG 480769 |||||||| |||||||| Sbjct 29748 GGTCTTAACAAAAATTTG 29765 Score = 105 bits (116), Expect = 4e-17 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 480629 CTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTT 480688 ||| ||||||||||| | |||||||||||| || |||||||| || || |||||||| || Sbjct 30212 CTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATTTT 30271 Query 480689 TTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGT 480748 ||| ||| ||| || ||||||| || ||| | || || ||||| || || Sbjct 30272 GCCTTTCACATTTTCTATTGTATCAGATAGTTCTACTTCCAAAGTTATTGTTTTTCCAGT 30331 Query 480749 GAGAGTCTTAACGAAAATTTG 480769 |||||||||||||||||||| Sbjct 30332 AAGAGTCTTAACGAAAATTTG 30352 Score = 93.3 bits (102), Expect = 3e-13 Identities = 105/138 (76%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692 |||||||||||||| || |||||||| || || || ||||| |||||||||||||| | Sbjct 31416 CCAGCAAAAATAAGCCGCTGTTGATCCGGTGGGATGCCTTCTTTGTCTTGAATCTTGCTT 31475 Query 480693 TTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAG 480751 || ||| |||||| ||||| | || | || |||||| ||||| ||||| || || | Sbjct 31476 TTTACATTTTCAATTGTATCTGATGGCTCAA-CTTCAAGTGTAATCGTTTTTCCTGTCAA 31534 Query 480752 AGTCTTAACGAAAATTTG 480769 || || || || || || Sbjct 31535 CGTTTTCACAAATATCTG 31552 Score = 93.3 bits (102), Expect = 3e-13 Identities = 105/138 (76%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692 |||||||| || | |||||| ||||| || ||||||||||| || || || || || | Sbjct 55492 CCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCCTGTATTTTCCCT 55551 Query 480693 TTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAG 480751 || ||| |||||| ||||||| || | | || ||| || || ||||| || ||||| Sbjct 55552 TTCACATTTTCAATTGTATCAGATGGTTCCACTTCCAA-TGTGATGGTTTTGCCAGTGAG 55610 Query 480752 AGTCTTAACGAAAATTTG 480769 |||||||| |||||||| Sbjct 55611 GGTCTTAACAAAAATTTG 55628 >seq11 Length=460 Score = 109 bits (120), Expect = 4e-18 Identities = 111/142 (78%), Gaps = 2/142 (1%) Strand=Plus/Minus Query 480629 CTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTT 480688 ||| |||||||| || | |||||||||||| || |||||||||||||| || || || || Sbjct 203 CTTACCAGCAAATATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTT 144 Query 480689 TTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGG 480747 ||| ||| || || ||||||| || | | || ||||| | || ||||| |||| Sbjct 143 GCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGG-TGATCGTTTTGCCGG 85 Query 480748 TGAGAGTCTTAACGAAAATTTG 480769 | |||||||||||||||||||| Sbjct 84 TAAGAGTCTTAACGAAAATTTG 63 >seq1187 Length=25466 Score = 107 bits (118), Expect = 1e-17 Identities = 108/138 (78%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692 ||||||||||| | |||||||||||| || |||||||||||||| || || || || | Sbjct 21839 CCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTCCCT 21780 Query 480693 TTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAG 480751 || ||| |||||| ||||||| || | | || ||| || || ||||| || ||||| Sbjct 21779 TTCACATTTTCAATTGTATCAGATGGTTCCACTTCCAA-TGTGATGGTTTTGCCAGTGAG 21721 Query 480752 AGTCTTAACGAAAATTTG 480769 |||||||| |||||||| Sbjct 21720 GGTCTTAACAAAAATTTG 21703 Score = 102 bits (112), Expect = 5e-16 Identities = 107/138 (78%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692 ||||||||||| |||||||| ||||| || ||||||||||| || || || || || | Sbjct 20990 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCCTGTATTTTCCCT 20931 Query 480693 TTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAG 480751 || ||| |||||| ||||||| || | | || ||| || || ||||| || ||||| Sbjct 20930 TTCACATTTTCAATTGTATCAGATGGTTCCACTTCCAA-TGTGATGGTTTTGCCAGTGAG 20872 Query 480752 AGTCTTAACGAAAATTTG 480769 |||||||| |||||||| Sbjct 20871 GGTCTTAACAAAAATTTG 20854 Score = 102 bits (112), Expect = 5e-16 Identities = 107/138 (78%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692 ||||||||||| |||||||| ||||| || ||||||||||| || || || || || | Sbjct 21273 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCCTGTATTTTCCCT 21214 Query 480693 TTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAG 480751 || ||| |||||| ||||||| || | | || ||| || || ||||| || ||||| Sbjct 21213 TTCACATTTTCAATTGTATCAGATGGTTCCACTTCCAA-TGTGATGGTTTTGCCAGTGAG 21155 Query 480752 AGTCTTAACGAAAATTTG 480769 |||||||| |||||||| Sbjct 21154 GGTCTTAACAAAAATTTG 21137 Score = 102 bits (112), Expect = 5e-16 Identities = 107/138 (78%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692 ||||||||||| |||||||| ||||| || ||||||||||| || || || || || | Sbjct 21556 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCCTGTATTTTCCCT 21497 Query 480693 TTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAG 480751 || ||| |||||| ||||||| || | | || ||| || || ||||| || ||||| Sbjct 21496 TTCACATTTTCAATTGTATCAGATGGTTCCACTTCCAA-TGTGATGGTTTTGCCAGTGAG 21438 Query 480752 AGTCTTAACGAAAATTTG 480769 |||||||| |||||||| Sbjct 21437 GGTCTTAACAAAAATTTG 21420 Score = 102 bits (112), Expect = 5e-16 Identities = 107/138 (78%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692 ||||||||||| |||||||| ||||| || |||||||||||||| || || || || | Sbjct 22124 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCCTTATCCTGTATTTTGCCT 22065 Query 480693 TTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAG 480751 || ||| || || ||||||| || | | || ||| | || | ||||| || || || Sbjct 22064 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAATGTTATT-GTTTTTCCAGTAAG 22006 Query 480752 AGTCTTAACGAAAATTTG 480769 |||||||||||||||||| Sbjct 22005 AGTCTTAACGAAAATTTG 21988 Score = 93.3 bits (102), Expect = 3e-13 Identities = 105/138 (76%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692 |||||||| || | |||||| ||||| || ||||||||||| || || || || || | Sbjct 22407 CCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCCTGTATTTTCCCT 22348 Query 480693 TTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAG 480751 || ||| |||||| ||||||| || | | || ||| || || ||||| || ||||| Sbjct 22347 TTCACATTTTCAATTGTATCAGATGGTTCCACTTCCAA-TGTGATGGTTTTGCCAGTGAG 22289 Query 480752 AGTCTTAACGAAAATTTG 480769 |||||||| |||||||| Sbjct 22288 GGTCTTAACAAAAATTTG 22271 Score = 89.7 bits (98), Expect = 3e-12 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692 |||||||||||||| || |||||||| || || || ||||| |||||||||||||| | Sbjct 20708 CCAGCAAAAATAAGCCGCTGTTGATCCGGTGGGATGCCTTCTTTGTCTTGAATCTTGCTT 20649 Query 480693 TTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGA 480752 || ||| |||||| ||||| | | | |||||| ||||| ||||| || || | Sbjct 20648 TTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCAAC 20589 Query 480753 GTCTTAACGAAAATTTG 480769 || || || || || || Sbjct 20588 GTTTTCACAAATATCTG 20572 >seq378 Length=398 Score = 102 bits (112), Expect = 5e-16 Identities = 107/138 (78%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692 |||||||| || | |||||| ||||| || |||||||||||||| || || || || | Sbjct 254 CCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCCTTATCCTGTATTTTGCCT 195 Query 480693 TTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAG 480751 || ||| || || ||||||| || | | || ||||| | || ||||| ||||| || Sbjct 194 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGG-TGATCGTTTTGCCGGTAAG 136 Query 480752 AGTCTTAACGAAAATTTG 480769 |||||||||||||||||| Sbjct 135 AGTCTTAACGAAAATTTG 118 >seq2680 Length=639 Score = 96.9 bits (106), Expect = 2e-14 Identities = 155/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 |||||||||||| ||||| ||||| ||| || || | ||| || || || || || Sbjct 599 ACGAAGACGGAGGACAAGGTGAAGGGTAGACTCCTTCTGGATATTGTAGTCTGCCAGGGT 540 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | ||| || || ||||| || ||||| ||||| | || || || || ||||| || Sbjct 539 ACGCCCATCCTCGAGCTGCTTGCCGGCAAAGATAAGCCTCTGCTGGTCTGGTGGAATCCC 480 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTG-TGTGAAGTTTCAA 480729 ||||||||||||||||| || ||| ||||| || || | | | | | |||| Sbjct 479 CTCCTTGTCTTGAATCTTGGCCTTCACATTGTCAATGGTGTCTGAGCTCTCCA-CCTCAA 421 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 |||| || || || || || |||||||| || ||||| || Sbjct 420 GGGTGATGGTCTTCCCTGTAAGAGTCTTGACAAAAATCTG 381 >seq2382 Length=364334 Score = 95.1 bits (104), Expect = 8e-14 Identities = 163/232 (70%), Gaps = 5/232 (2%) Strand=Plus/Plus Query 296075 TTGGAAGATGGATTGATATTAATAATGAATATAAAACAATGGATAAAAATTTTATGGAAT 296134 |||| ||||||| ||| |||| ||||| |||||||| | || | ||| ||||||| Sbjct 313461 TTGGTCGATGGATAGATTTTAAAAATGACTATAAAACTTTATATCCGAGTTTCATGGAAT 313520 Query 296135 CTGTTATTTGGTCATTTAAACAACTTTATGA-AAAGGAAATGATTTTTGAAGGTTATAAA 296193 |||| ||| ||| ||||| || ||| | ||||| || | | |||| ||| Sbjct 313521 CTGTATGGTGGGTATTCAAACAGCTGTATAACAAAGGTCTTG-TCTACAGAGGTGTAAAA 313579 Query 296194 GTTATGCCTTATTCTACTGGTTGCAATACACCATTATCTCATTTTGAGGCAAAACAAAAT 296253 || ||||| | |||||||| |||| || ||||| || ||||||| | ||||||| Sbjct 313580 GTGATGCCATTTTCTACTGCTTGCGGGACTCCATTGTCAAATTTTGAATCTGGACAAAAT 313639 Query 296254 TATAAAGAGATTATTGATCCATCT-GTTACTTGTTGTTTTGAAATTATTTCT 296304 || ||||| | |||||||| || |||| | | |||| || || ||||| Sbjct 313640 TACAAAGAAGTCATTGATCCTGCTAGTTAGTAAT--TTTTTAATTTGTTTCT 313689 >seq2446 Length=334761 Score = 91.5 bits (100), Expect = 1e-12 Identities = 74/90 (82%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 476090 GGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCA 476149 ||||| ||||| || || | |||||||| ||||| ||||||||||||||||| |||||| Sbjct 75957 GGTATACCTCCGGCCCCTCGTGGAGTTCCACAAATAGAAGTTACTTTTGATATCGATGCA 76016 Query 476150 AATGGTATTCTTAATGTTACTGCTTGTGAT 476179 |||||||| || |||| | |||| | ||| Sbjct 76017 AATGGTATAGTTCATGTCAGTGCTCGAGAT 76046 >seq319 Length=111798 Score = 89.7 bits (98), Expect = 3e-12 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 299114 GAAGAAGAGATTAAAAAAGCTTATAAAAAATTAGCTATGAAATATCATCCTGACAGAAAT 299173 ||||| || || |||||||||||| || | || |||||||||||||||||| || Sbjct 76720 GAAGATGAAATCAAAAAAGCTTATCGGAAGATGGCATTGAAATATCATCCTGACAAGAAC 76661 Query 299174 AAAAGTCCTGAAGCGGAAGAAAAGTTTaaaaaaaTAAGTCATGCTTATAGTATTCTTTCA 299233 ||||| ||||| || ||| ||||| ||| | || | || || | |||| Sbjct 76660 AAAAGCCCTGACGCAGAAAGCAAGTTCAAAGAGATTGCAGAAGCATACGATGTTCTGAGT 76601 Query 299234 GATCCAACCAAAAAAGAAGTATATGATAAATTTGGAGAAGAAGG 299277 ||| | | || |||||| |||| ||||||||||| |||||||| Sbjct 76600 GATGCTAAAAAGAAAGAAATATACGATAAATTTGGTGAAGAAGG 76557 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268051845184412