Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20nelsoni_20[genbank_20GCA_5F001447455.1_202015-11-24]
2,969 sequences; 47,436,005 total letters
Query= NC_020864.1
Length=205622
Score E
Sequences producing significant alignments: (Bits) Value
seq2516 313 3e-80
seq2680 190 3e-43
seq2371 134 2e-26
seq1187 134 2e-26
seq1292 132 6e-26
seq827 131 2e-25
seq2465 129 8e-25
seq2690 122 1e-22
seq378 113 6e-20
seq11 109 7e-19
seq2706 100 4e-16
>seq2516
Length=768920
Score = 313 bits (346), Expect = 3e-80
Identities = 557/809 (69%), Gaps = 9/809 (1%)
Strand=Plus/Minus
Query 195299 GCTATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCGT 195358
|||||||| || ||||| || ||||| ||| |||||||| || | || ||| |
Sbjct 551782 GCTATTGGAATTGATTTGGGTACTACCTACAGTTGTGTTGGCGTGTTCCAGCATGGTAAA 551723
Query 195359 GTAGAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACA 195418
|| || ||||| | || || ||||| || ||||| || ||| || ||||| || ||
Sbjct 551722 GTTGAAATTATTGCCAACGATCAAGGGAATCGTACCACGCCAAGTTATGTTGCTTTCACC 551663
Query 195419 GATAATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAAT 195478
|||| || || || |||||||||| ||||||||||| || |||| ||| |||
Sbjct 551662 GATACCGAGCGACTGATTGGAGATGCGGCAAAAAATCAAGTTGCGTTGAATCCTCATAAT 551603
Query 195479 ACTGTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGAC 195538
|| || ||||| |||||||| || || ||||| ||| ||| || ||
Sbjct 551602 ACAGTTTTTGATGCGAAGCGACTCATCGGTCGTCGATTTGATGATGCTGCGGTGCAGTCT 551543
Query 195539 GATATAAAGGACTGGTCTTATGAAGTTGTTCCCGGTGTGGCTGAT--AAGCCTATGATTA 195596
||||| || | ||| | | ||||| | || || ||| || |||| |||
Sbjct 551542 GATATGAAACATTGGCCATTCAAAGTTATCAACGATG-----GATCGAAACCTAAAATTC 551488
Query 195597 ATGTTGAATTTCACGGTGAGAAGAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGT 195656
| || |||| | || ||| ||| |||| | ||||||||||| |||||||||
Sbjct 551487 AAGTCGAATACAAAGGCGAGTCGAAGTCATTTACACCCGAAGAAATCAGTGCTATGGTGT 551428
Query 195657 TGATTAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTG 195716
| | ||||||||||| ||||| ||| ||| |||| |||||||| || ||||| ||
Sbjct 551427 TAGTGAAGATGAAGGAAACTGCCGAAGCTTATTTGGGAAAAACTGTTAAGGATGCCGTAA 551368
Query 195717 TGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTA 195776
| ||||| || || || || | ||||| || || |||||||| || ||||||| | |
Sbjct 551367 TTACTGTTCCGGCATATTTTAACGATTCTCAGCGTCAGGCGACCAAAGACGCTGGAACGA 551308
Query 195777 TTGCGGGTCTAAACTGTCTTA-GAATTATCAATGAACCAACAGCGGCTGCAATTGCTTAT 195835
|| | ||| | || ||| || | || ||||| |||||||||||||||||||||||||||
Sbjct 551307 TTTCTGGTTTGAA-TGTTTTGCGTATCATCAACGAACCAACAGCGGCTGCAATTGCTTAT 551249
Query 195836 GGTCTGGACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGT 195895
|| || || | || | || || |||||| |||| ||||| || |||||||||
Sbjct 551248 GGACTTGATAGAAAGGGTGGCGGTGAACGAAATGTTCTGATATTTGACCTTGGTGGTGGT 551189
Query 195896 ACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCT 195955
|| |||||||| || || | | || |||| ||| || || || || ||| |||| |||
Sbjct 551188 ACTTTTGATGTGTCTATTTTGACCATCGAAGATGGCATTTTTGAGGTCAAGTCTACCGCT 551129
Query 195956 GGTGATACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGTCATTTGTCTGAT 196015
||||| |||||| | |||||||| || ||||| || | | |||||| | |
Sbjct 551128 GGTGACACTCATTTGGGTGGTGAGGACTTCGACAATCGAATGGTAAATCATTTCGTGGCT 551069
Query 196016 GAGTTCCGTCGAAAGAATAAGAAAGATATTTCTGGAAATCCTAGGGCTCTTCGTCGGCTT 196075
||||| || ||||| ||||| || || || ||||| | || | ||||| |
Sbjct 551068 GAGTTTAAGCGCAAGAACAAGAAGGACATGTCATCTAATCCACGCGCATTGCGTCGCTTG 551009
Query 196076 AGGACTGCATGTGAACGTGCCAAACGAAC 196104
| || || |||||||| || || || ||
Sbjct 551008 CGCACAGCTTGTGAACGAGCGAAGCGCAC 550980
Score = 114 bits (126), Expect = 2e-20
Identities = 180/255 (71%), Gaps = 2/255 (1%)
Strand=Plus/Minus
Query 196151 GACGGAATTGACTTCTATACAACTATTACCCGTGCACGTTTTGAAGAGTTAAACTCTGAT 196210
|| || ||||| ||||| || ||||||||| | || || || |||||||| || ||||
Sbjct 550878 GAAGGCATTGATTTCTACACCACTATTACCAGAGCTCGCTTCGAAGAGTTGAATGCTGAC 550819
Query 196211 TTGTTTAGGAAGTGTATGGAACCTGTTGAACAAGTACTTCGTGACGCAAAGATGGATAAG 196270
||||| | | ||||||| || ||| ||| ||||||||||| || | || ||
Sbjct 550818 TTGTTCCGTTCTACTTTGGAACCAGTAGAAAAAGCTCTTCGTGACGCGAAATTAGACAAA 550759
Query 196271 TCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATCAACCCGTATTCCGAAGATTCAACAG 196330
| | || ||||| |||| | ||||| ||||| || || ||||| || |||| ||
Sbjct 550758 GCAGTGATTCATGAAGTTGTTTTGGTGGGTGGATCTACTCGCATTCCTAAAGTTCAGAAG 550699
Query 196331 ATGCTTTCTAG-CTTCTTCAATAATAAAGATTTAAACAAAACGATCAACCCGGATGAAGC 196389
|| || | || || || ||| ||||| | ||||||| ||||| || || |||||
Sbjct 550698 TTG-TTGCAAGATTTTTTTAATGGGAAAGAACTTAACAAAAGCATCAATCCAGACGAAGC 550640
Query 196390 AGTTGCTTATGGTGC 196404
||||| ||||| ||
Sbjct 550639 TGTTGCCTATGGAGC 550625
Score = 84.2 bits (92), Expect = 3e-11
Identities = 189/279 (68%), Gaps = 4/279 (1%)
Strand=Plus/Minus
Query 196652 CTTGGAACTTTCGATTTGACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAAT 196711
||||||| ||||| ||||| || || ||| |||| || | ||||||||||| ||| |
Sbjct 550240 CTTGGAAAGTTCGAGTTGACTGGAATCCCACCTGCTCCACGTGGTGTTCCACAAATTGAA 550181
Query 196712 GTTTGCTTCGATATAGACGCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCT 196771
||| || || || || || || || ||| | ||||| | || | ||||| | |
Sbjct 550180 GTTACGTTTGACATCGATGCCAACGGCATTTTGAACGTTTCTGCCGTTGACAAAAGTACC 550121
Query 196772 GGCAAATCTGAA-AAGATTGTGATTACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAAT 196830
||| || || || || ||||| |||||||| || |||||| || ||||| ||
Sbjct 550120 GGC-CGTCAAAACAAAATCACCATTACTAATGACAAAGGTCGGCTTAGCAAAGAGGACAT 550062
Query 196831 TGAACGTATGGTTCAAGATGCGGAAAAGTACAGGGAAGAAGACGAGGTATATGAGAAACA 196890
|| |||||||| | ||| || || | || | | ||||| || | |||| ||
Sbjct 550061 CGATCGTATGGTGCGAGAAGCCGACCAATATAAACAGGAAGATGA-AAAGCAGAGAGACC 550003
Query 196891 G-ATGAAAGCTATAAATGATCTAGAAAATTCTACTTATA 196928
| || |||| | ||||| ||| |||| || | ||| ||
Sbjct 550002 GTATTCAAGCGAAAAATGGTCTGGAAAGTTATGCTTTTA 549964
>seq2680
Length=639
Score = 190 bits (210), Expect = 3e-43
Identities = 182/233 (78%), Gaps = 0/233 (0%)
Strand=Plus/Plus
Query 171857 GTAGTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGT 171916
|| ||||||| || ||||| || || ||||| || || || |||||||| ||||| |||
Sbjct 373 GTGGTATGCAGATTTTTGTCAAGACTCTTACAGGGAAGACCATCACCCTTGAGGTGGAGA 432
Query 171917 CGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCG 171976
|||||||| || || || | || |||||||||||||| ||||| || |||||||| |
Sbjct 433 GCTCAGACACCATTGACAATGTGAAGGCCAAGATTCAAGACAAGGAGGGGATTCCACCAG 492
Query 171977 ATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATT 172036
| ||||| | ||||| ||||| || || ||||| || ||||| |||||||| || || |
Sbjct 493 ACCAGCAGAGGCTTATCTTTGCCGGCAAGCAGCTCGAGGATGGGCGTACCCTGGCAGACT 552
Query 172037 ACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089
|||| | || ||||||||||| || |||||||| || | ||||| ||||||
Sbjct 553 ACAATATCCAGAAGGAGTCTACCCTTCACCTTGTCCTCCGTCTTCGTGGTGGT 605
Score = 98.7 bits (108), Expect = 1e-15
Identities = 110/147 (75%), Gaps = 0/147 (0%)
Strand=Plus/Plus
Query 171943 GCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGT 172002
||||||||||| || ||||| || || || || || || || || || || ||||| ||
Sbjct 3 GCCAAGATTCAGGACAAGGAGGGAATCCCCCCGGACCAACAGCGTCTGATCTTTGCCGGA 62
Query 172003 AAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTA 172062
|| |||||||| ||||| || ||||| || ||||||||| | || ||||| || || ||
Sbjct 63 AAGCAGCTTGAGGATGGCCGCACCCTGGCAGATTACAACATCCAGAAGGAATCCACCCTT 122
Query 172063 CACCTTGTTCTAAGGCTTCGGGGTGGT 172089
|| | || || | || || ||||||
Sbjct 123 CATTTGGTGCTTCGTCTCCGTGGTGGT 149
>seq2371
Length=372962
Score = 134 bits (148), Expect = 2e-26
Identities = 321/484 (66%), Gaps = 6/484 (1%)
Strand=Plus/Plus
Query 195333 GTGTTGGTGTATGGCAAAATGATCGTGTAGAGATTATCCCGAATGACCAAGGAAACCGTA 195392
||||||| || | | |||| |||||| || ||||| | ||||| || || || || |
Sbjct 120926 GTGTTGGGGTTTTCAAGAATGGTCGTGTTGAAATTATTGCCAATGATCAGGGCAATCGGA 120985
Query 195393 CAACTCCATCGTACGTTGCCTTTACA---GATAATGAACGTCTCGTTGGAGATGCCGCAA 195449
|| || ||||| || || ||||| || || ||||| | || || ||||| |
Sbjct 120986 TCACCCCGTCGTATGTAGCTTTTACGCCGGAAGGGGAGCGTCTGATCGGCGACGCCGCGA 121045
Query 195450 AAAATCAGACAGCTATGAACCCTATCAATACTGTCTTTGACGCGAAGCGTCTTATTGGTC 195509
|||||||| | | || ||| ||||| || || ||||| |||||| | | ||||
Sbjct 121046 AAAATCAGTTGACCACTAATCCTGAGAATACGGTATTCGACGCAAAGCGTATGGTCGGTC 121105
Query 195510 GCAAGTTTTCGGATAAGAAAGTCCAAGACGATATAAAGGACTGGTCTTATGAAGTTGTTC 195569
| | | |||||||||| | |||| ||| || ||| | | || || |||
Sbjct 121106 GAGAATGGTCGGATAAGAGTCTTCAAGCGGATCGTAAAATGTGGCCATTTGCGGTGGTT- 121164
Query 195570 CCGGTGTGGCTGATAAGCCTATGATTAATGTTGAATTTCACGGTGAGAAGAAACAATTTG 195629
| | | || || | || | || || ||||||| |||||| ||
Sbjct 121165 --GAAAAATCGAACAAACCGAACGTTCAACTTACTGTTAACGGTGAAAAGAAATTGTTCA 121222
Query 195630 CTCCCGAAGAAATTTCGTCTATGGTGTTGATTAAGATGAAGGAGACTGCGGAATCTTTCA 195689
|||||||||||||||| | ||||| ||| | || ||||| || | ||| ||| |||
Sbjct 121223 CTCCCGAAGAAATTTCAGCGATGGTTTTGTTGAAAATGAAAGAAATTGCCGAAGCTTATT 121282
Query 195690 TGGGTAAAACTGTGAAAGATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAAC 195749
|||| ||| |||||| |||| || || || || || ||||| |||| ||| ||||||
Sbjct 121283 TGGGCAAAGAAGTGAAAAATGCCGTCGTCACCGTTCCCGCTTATTTCAACGATGCACAAC 121342
Query 195750 GACAGGCGACAAAGGACGCTGCTGCTATTGCGGGTCTAAACTGTCTTAGAATTATCAATG 195809
| || || || || || || | | ||||| ||||| || | || |||| ||||| |
Sbjct 121343 GTCAAGCTACCAAAGATGCGGGCACCATTGCTGGTCTTAATGTTGTTCGAATCATCAACG 121402
Query 195810 AACC 195813
||||
Sbjct 121403 AACC 121406
Score = 114 bits (126), Expect = 2e-20
Identities = 331/503 (66%), Gaps = 10/503 (2%)
Strand=Plus/Plus
Query 196373 ATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCTCAGGT 196432
||||| || || ||||| || ||||| ||||| || || ||||||| || | || |||
Sbjct 122155 ATCAATCCAGACGAAGCTGTCGCTTACGGTGCTGCGGTCCAGGCTGGCGTTATTTCCGGT 122214
Query 196433 GTTGACAATAATAACGTCCAAGATCTTCTGCTACTTGATGTTGCACCCGTATCCCTGGGT 196492
| || | | | || |||||| |||| | || || || | | ||||
Sbjct 122215 GAAGAAGACACTG--GT----GATCTTGTGCTGTTGGACGTCAATCCGTTGACTTTGGGA 122268
Query 196493 CTTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACACAACTATTCCGACT 196552
||||||| | || || || ||||| || | ||| ||||| || | |||||
Sbjct 122269 ATTGAAACTGTCGGCGGAGTGATGACGAAGCTGATTCCCAGGAATACGGTAGTGCCGACC 122328
Query 196553 AAGAAGGAACAAGTCTTTT-CAACGTATTCCGATAATCAACCAGGTGTTCATATTCAAGT 196611
||||| || | || || || | |||| ||||| || ||| |||||||||
Sbjct 122329 AAGAAATCCCAGATATTCAGCACCGCAG-CCGACAATCAGCCCACAGTTACTATTCAAGT 122387
Query 196612 ATATGAAGGAGAACGCTCCCGTG-CAAAGGATAACCATCTACTTGGAACTTTCGATTTGA 196670
| ||||| ||||| || || | || || |||||||| ||||| | |||||| |||
Sbjct 122388 TTTCGAAGGCGAACGA-CCAATGACCAAAGACAACCATCTTCTTGGGAAATTCGATCTGA 122446
Query 196671 CGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCGATATAGACG 196730
| || || || | || || | || || ||||| ||| | ||| |||||||| ||||
Sbjct 122447 CCGGCATACCTCCGGCTCCGCGTGGGGTACCACAAATTGAAGTTACATTCGATATCGACG 122506
Query 196731 CAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCTGAAAAGATTG 196790
|| || ||| | ||||||| || || ||||| | | | ||||| | |||||
Sbjct 122507 TGAACGGCATTTTGCACGTCACCGCCGAAGACAAAGGTACCGGCAACAAGAACAAGATCA 122566
Query 196791 TGATTACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTGAACGTATGGTTCAAGATG 196850
|||||||||||| | || || || ||| || ||||| || ||| | | ||||
Sbjct 122567 CCATTACCAATGACCACAATCGTCTGTCGCCGGAAGATATTGACCGCATGATCAACGATG 122626
Query 196851 CGGAAAAGTACAGGGAAGAAGAC 196873
| ||||| || |||||| |||
Sbjct 122627 CCGAAAAATATGCGGAAGAGGAC 122649
Score = 89.7 bits (98), Expect = 7e-13
Identities = 116/160 (73%), Gaps = 3/160 (2%)
Strand=Plus/Plus
Query 195814 AACAGCGGCTGCAATTGCTTATGGTCTGGACAAGAACAAGGACGAAGATAAAAATGTATT 195873
||| || ||||||||||| || ||||| ||||| || ||| |||| |||||| | ||
Sbjct 121459 AACTGCTGCTGCAATTGCATACGGTCTTGACAAAAAGGAGGGCGAA---AAAAATATTTT 121515
Query 195874 GATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTAT 195933
| | ||||| || ||||| ||||| || || | | || | |||||| |||| |
Sbjct 121516 AGTTTACGATCTTGGAGGTGGAACGTTCGACGTTACTTTGCTTACTATTGACAATGGTGT 121575
Query 195934 ATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGT 195973
|||||||| | ||||| ||||||||||||| | |||
Sbjct 121576 TTTCGAAGTGCTGTCTACTAATGGTGATACTCATTTGGGT 121615
>seq1187
Length=25466
Score = 134 bits (148), Expect = 2e-26
Identities = 115/142 (81%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
||||| || ||||||||||| | || |||||||| || || || || |||||| |||||
Sbjct 20569 ATGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCA 20628
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
|| ||||| || || | ||| |||||||||||| || |||||||| ||||| |||||
Sbjct 20629 GATACAATTGAAAATGTAAAAAGCAAGATTCAAGACAAAGAAGGCATCCCACCGGATCAA 20688
Query 171982 CAACGACTTATTTTTGCTGGTA 172003
|| || ||||||||||||||||
Sbjct 20689 CAGCGGCTTATTTTTGCTGGTA 20710
Score = 122 bits (134), Expect = 1e-22
Identities = 112/142 (79%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
|||||||| || || || || |||||||||||||| || || | || || || | ||
Sbjct 21985 ATGCAAATTTTCGTTAAGACTCTTACTGGAAAAACAATAACATTGGAAGTAGAACCATCT 22044
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
|| ||||| || || | |||| ||| || || ||||||||||| |||||||| ||||||
Sbjct 22045 GATACAATAGAGAATGTAAAAGGCAAAATACAGGATAAGGAAGGAATTCCACCAGATCAG 22104
Query 171982 CAACGACTTATTTTTGCTGGTA 172003
||||| || |||||||||||||
Sbjct 22105 CAACGTCTGATTTTTGCTGGTA 22126
Score = 118 bits (130), Expect = 1e-21
Identities = 112/143 (78%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
||||| || ||||| ||||| || ||||| ||||| || || || || || ||| | |||
Sbjct 20237 ATGCAGATATTTGTCAAAACTCTGACTGGGAAAACCATTACACTGGAAGTGGAGCCCTCA 20296
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
||||| || || || | || | || ||||| ||||| || || ||||||||||||||
Sbjct 20297 GACACCATTGAAAATGTGAAGGGTAAAATTCAGGATAAAGAGGGAATTCCACCCGATCAA 20356
Query 171982 CAACGACTTATTTTTGCTGGTAA 172004
||||| || ||||||||||||||
Sbjct 20357 CAACGTCTGATTTTTGCTGGTAA 20379
Score = 116 bits (128), Expect = 5e-21
Identities = 111/142 (78%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
|||||||| ||||| || ||||| ||||| ||||| ||||| | || || || | ||
Sbjct 20851 ATGCAAATTTTTGTTAAGACCCTCACTGGCAAAACCATCACATTGGAAGTGGAACCATCT 20910
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
|| ||||| || || | |||| || || || ||||| ||||| |||||||| ||||||
Sbjct 20911 GATACAATTGAAAATGTGAAAGGGAAAATACAGGATAAAGAAGGAATTCCACCAGATCAG 20970
Query 171982 CAACGACTTATTTTTGCTGGTA 172003
||||| || |||||||||||||
Sbjct 20971 CAACGTCTGATTTTTGCTGGTA 20992
Score = 116 bits (128), Expect = 5e-21
Identities = 111/142 (78%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
|||||||| ||||| || ||||| ||||| ||||| ||||| | || || || | ||
Sbjct 21134 ATGCAAATTTTTGTTAAGACCCTCACTGGCAAAACCATCACATTGGAAGTGGAACCATCT 21193
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
|| ||||| || || | |||| || || || ||||| ||||| |||||||| ||||||
Sbjct 21194 GATACAATTGAAAATGTGAAAGGGAAAATACAGGATAAAGAAGGAATTCCACCAGATCAG 21253
Query 171982 CAACGACTTATTTTTGCTGGTA 172003
||||| || |||||||||||||
Sbjct 21254 CAACGTCTGATTTTTGCTGGTA 21275
Score = 116 bits (128), Expect = 5e-21
Identities = 111/142 (78%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
|||||||| ||||| || ||||| ||||| ||||| ||||| | || || || | ||
Sbjct 21417 ATGCAAATTTTTGTTAAGACCCTCACTGGCAAAACCATCACATTGGAAGTGGAACCATCT 21476
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
|| ||||| || || | |||| || || || ||||| ||||| |||||||| ||||||
Sbjct 21477 GATACAATTGAAAATGTGAAAGGGAAAATACAGGATAAAGAAGGAATTCCACCAGATCAG 21536
Query 171982 CAACGACTTATTTTTGCTGGTA 172003
||||| || |||||||||||||
Sbjct 21537 CAACGTCTGATTTTTGCTGGTA 21558
Score = 113 bits (124), Expect = 6e-20
Identities = 110/142 (77%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
|||||||| ||||| || ||||| ||||| ||||| ||||| | || || || | ||
Sbjct 21700 ATGCAAATTTTTGTTAAGACCCTCACTGGCAAAACCATCACATTGGAAGTGGAACCATCT 21759
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
|| ||||| || || | |||| || || || ||||||||||| |||||||| |||||
Sbjct 21760 GATACAATTGAAAATGTGAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCAA 21819
Query 171982 CAACGACTTATTTTTGCTGGTA 172003
||||| | |||||||||||||
Sbjct 21820 CAACGTTTGATTTTTGCTGGTA 21841
Score = 107 bits (118), Expect = 3e-18
Identities = 109/142 (77%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
|||||||| ||||| || ||||| ||||| ||||| ||||| | || || || | ||
Sbjct 22268 ATGCAAATTTTTGTTAAGACCCTCACTGGCAAAACCATCACATTGGAAGTGGAACCATCT 22327
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
|| ||||| || || | |||| || || || ||||| ||||| |||||||| ||||||
Sbjct 22328 GATACAATTGAAAATGTGAAAGGGAAAATACAGGATAAAGAAGGAATTCCACCAGATCAG 22387
Query 171982 CAACGACTTATTTTTGCTGGTA 172003
||||| | || ||||||||||
Sbjct 22388 CAACGTTTGATATTTGCTGGTA 22409
>seq1292
Length=279
Score = 132 bits (146), Expect = 6e-26
Identities = 141/186 (76%), Gaps = 0/186 (0%)
Strand=Plus/Minus
Query 171904 CTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAA 171963
|| ||||||||| || || ||||| |||||| |||| |||||||| || |||||||||
Sbjct 279 CTGGAGGTTGAGAGCTCCGATACAATTGATAACGTCAAGGCCAAGATCCAGGATAAGGAA 220
Query 171964 GGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGT 172023
|| || ||||| |||||||| | | || || || || || ||||| || || || |
Sbjct 219 GGGATCCCACCGGATCAGCAGAGGTTGATCTTCGCCGGAAAGCAGCTCGAGGACGGTAGG 160
Query 172024 ACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGG 172083
||| | |||||||||||| |||| |||||||| || || || | || || | |||||
Sbjct 159 ACCTTGGCTGATTACAACATTCAGAAGGAGTCAACCCTCCATTTGGTGCTCCGTCTTCGC 100
Query 172084 GGTGGT 172089
||||||
Sbjct 99 GGTGGT 94
Score = 107 bits (118), Expect = 3e-18
Identities = 82/97 (85%), Gaps = 0/97 (0%)
Strand=Plus/Minus
Query 171857 GTAGTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGT 171916
|| ||||||| ||||||||||| |||||||| || || || ||||||||||||||||||
Sbjct 98 GTGGTATGCAGATCTTTGTGAAGACCCTTACCGGGAAGACCATCACCCTCGAGGTTGAGA 39
Query 171917 CGTCAGACACAATCGATAACATCAAAGCCAAGATTCA 171953
|| |||||||| |||||| |||| |||||||| ||
Sbjct 38 GCTCCGACACAATTGATAACGTCAAGGCCAAGATCCA 2
>seq827
Length=57960
Score = 131 bits (144), Expect = 2e-25
Identities = 114/142 (80%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
||||| || ||||||||||| | || |||||||| || || || || |||||| | |||
Sbjct 31555 ATGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCATCA 31496
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
|| ||||| || || | ||| |||||||||||| || |||||||| ||||| |||||
Sbjct 31495 GATACAATTGAAAATGTAAAAAGCAAGATTCAAGACAAAGAAGGCATCCCACCGGATCAA 31436
Query 171982 CAACGACTTATTTTTGCTGGTA 172003
|| || ||||||||||||||||
Sbjct 31435 CAGCGGCTTATTTTTGCTGGTA 31414
Score = 122 bits (134), Expect = 1e-22
Identities = 115/147 (78%), Gaps = 0/147 (0%)
Strand=Plus/Minus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
|||||||| || || || ||||||||||||||||| || || | || || || | ||
Sbjct 30919 ATGCAAATTTTCGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATCT 30860
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
|| ||||| || || | |||| ||| ||||||||||| || || |||||||| |||||
Sbjct 30859 GATACAATAGAAAATGTGAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCGGATCAA 30800
Query 171982 CAACGACTTATTTTTGCTGGTAAACAG 172008
||||| | |||||||||||||| |||
Sbjct 30799 CAACGTTTGATTTTTGCTGGTAAGCAG 30773
Score = 114 bits (126), Expect = 2e-20
Identities = 111/143 (78%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
||||| || ||||||||||| || ||||| ||||| || || || || || || | | |
Sbjct 31887 ATGCAGATATTTGTGAAAACTCTGACTGGGAAAACCATTACTCTGGAAGTGGAACCCTTA 31828
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
||| |||| || || | |||| || ||||| ||||| || || ||||||||||||||
Sbjct 31827 GACTCAATTGAAAATGTGAAAGGTAAAATTCAGGATAAAGAGGGAATTCCACCCGATCAA 31768
Query 171982 CAACGACTTATTTTTGCTGGTAA 172004
|| || || ||||||||||||||
Sbjct 31767 CAGCGTCTGATTTTTGCTGGTAA 31745
Score = 113 bits (124), Expect = 6e-20
Identities = 113/147 (77%), Gaps = 0/147 (0%)
Strand=Plus/Minus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
|||||||| || || || || |||||||||||||| || || | || || || ||
Sbjct 30637 ATGCAAATTTTCGTTAAGACTCTTACTGGAAAAACAATAACTTTGGAAGTAGAACTATCT 30578
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
|| ||||| || || | |||| ||| ||||||||||| || || |||||||| |||||
Sbjct 30577 GATACAATAGAAAATGTGAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCGGATCAA 30518
Query 171982 CAACGACTTATTTTTGCTGGTAAACAG 172008
||||| | |||||||||||||| |||
Sbjct 30517 CAACGTTTGATTTTTGCTGGTAAGCAG 30491
Score = 109 bits (120), Expect = 7e-19
Identities = 110/143 (77%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
|||||||| || || || || |||||||||||||| || || | || || || ||
Sbjct 30355 ATGCAAATTTTCGTTAAGACTCTTACTGGAAAAACAATAACTTTGGAAGTAGAACTATCT 30296
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
|| ||||| || || | |||| ||| ||||||||||| || || |||||||| |||||
Sbjct 30295 GATACAATAGAAAATGTGAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCGGATCAA 30236
Query 171982 CAACGACTTATTTTTGCTGGTAA 172004
||||| | ||||||||||||||
Sbjct 30235 CAACGTTTGATTTTTGCTGGTAA 30213
Score = 107 bits (118), Expect = 3e-18
Identities = 109/142 (77%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
|||||||| ||||| || ||||| ||||| ||||| ||||| | || || || | ||
Sbjct 55631 ATGCAAATTTTTGTTAAGACCCTCACTGGCAAAACCATCACATTGGAAGTGGAACCATCT 55572
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
|| ||||| || || | |||| || || || ||||| ||||| |||||||| ||||||
Sbjct 55571 GATACAATTGAAAATGTGAAAGGGAAAATACAGGATAAAGAAGGAATTCCACCAGATCAG 55512
Query 171982 CAACGACTTATTTTTGCTGGTA 172003
||||| | || ||||||||||
Sbjct 55511 CAACGTTTGATATTTGCTGGTA 55490
Score = 104 bits (114), Expect = 3e-17
Identities = 108/142 (76%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
|||||||| ||||| || ||||| ||||| || || ||||| | || || || | ||
Sbjct 29768 ATGCAAATTTTTGTTAAGACCCTAACTGGGAAGACCATCACGTTGGAAGTGGAACCATCT 29709
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
|| || | || || | |||| ||||||||||||||||| || ||||| || |||||
Sbjct 29708 GATACTGTTGAGAATGTGAAAGGGAAGATTCAAGATAAGGAGGGAATTCCTCCAGATCAA 29649
Query 171982 CAACGACTTATTTTTGCTGGTA 172003
|| || || |||||||||||||
Sbjct 29648 CAGCGTCTGATTTTTGCTGGTA 29627
>seq2465
Length=325902
Score = 129 bits (142), Expect = 8e-25
Identities = 115/144 (80%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 171861 TATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTC 171920
|||||| || || ||||| || ||||||||||||||||| || || || ||||| | ||
Sbjct 18021 TATGCAGATATTCGTGAAGACACTTACTGGAAAAACTATAACACTAGAAGTTGAACCATC 17962
Query 171921 AGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCA 171980
|||||| ||||| || | ||| || ||||| ||||||||||||||||| || |||||
Sbjct 17961 AGACACCATCGAAAATGTTAAAAGTAAAATTCAGGATAAGGAAGGCATTCCTCCTGATCA 17902
Query 171981 GCAACGACTTATTTTTGCTGGTAA 172004
|||| || | || ||||| |||||
Sbjct 17901 GCAAAGATTAATCTTTGCAGGTAA 17878
Score = 127 bits (140), Expect = 3e-24
Identities = 114/143 (80%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
||||| || ||||||||||| | ||||||||||| ||||| | ||||| ||| | ||
Sbjct 17056 ATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAGGTAGAGCCTTCG 16997
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
||||| || || || | ||| ||| |||||||| || |||||||||||||| ||||||
Sbjct 16996 GACACGATTGAAAATGTGAAAAGCAAAATTCAAGACAAAGAAGGCATTCCACCTGATCAG 16937
Query 171982 CAACGACTTATTTTTGCTGGTAA 172004
|| ||| | || |||||||||||
Sbjct 16936 CAGCGATTGATATTTGCTGGTAA 16914
Score = 125 bits (138), Expect = 9e-24
Identities = 114/144 (79%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 171860 GTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGT 171919
||||||| || ||||||||||| | ||||||||||| ||||| | || || ||| | |
Sbjct 17344 GTATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCAT 17285
Query 171920 CAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATC 171979
| || || || || || | ||| || ||||||||||||||||||||||| || ||||
Sbjct 17284 CTGATACGATTGAAAATGTGAAAAGTAAAATTCAAGATAAGGAAGGCATTCCGCCTGATC 17225
Query 171980 AGCAACGACTTATTTTTGCTGGTA 172003
|||||||| | || ||||||||||
Sbjct 17224 AGCAACGATTGATATTTGCTGGTA 17201
>seq2690
Length=629
Score = 122 bits (134), Expect = 1e-22
Identities = 141/190 (74%), Gaps = 0/190 (0%)
Strand=Plus/Minus
Query 196673 GGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCGATATAGACGCA 196732
|| ||||| | ||||| || || || || ||||| | ||||||||| || || || |||
Sbjct 600 GGCATTCCTCCAGCACCTAGGGGAGTCCCTCAGATCACTGTTTGCTTTGACATTGATGCA 541
Query 196733 AATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCTGAAAAGATTGTG 196792
||||| ||||| || ||| | |||||||||||| | ||||| | | ||||||
Sbjct 540 AATGGCATTCTCAATGTCTCTGCTGAGGACAAGACAACTGGCCAGAAGAACAAGATTACA 481
Query 196793 ATTACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTGAACGTATGGTTCAAGATGCG 196852
|| || ||||||||||| | || || |||||||| ||||| ||||| ||||| |||
Sbjct 480 ATCACTAATGACAAGGGAAGACTGTCCAAGGAGGAGATTGAGAAGATGGTGCAAGAAGCG 421
Query 196853 GAAAAGTACA 196862
|| || ||||
Sbjct 420 GAGAAATACA 411
>seq378
Length=398
Score = 113 bits (124), Expect = 6e-20
Identities = 110/142 (77%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
|||||||| || || || || ||||| || ||||| |||||| | || || || | ||
Sbjct 115 ATGCAAATTTTCGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATCT 174
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
|| ||||| || || | |||| ||| || || ||||||||||| |||||||| ||||||
Sbjct 175 GATACAATAGAGAATGTAAAAGGCAAAATACAGGATAAGGAAGGAATTCCACCAGATCAG 234
Query 171982 CAACGACTTATTTTTGCTGGTA 172003
||||| | || ||||||||||
Sbjct 235 CAACGTTTGATATTTGCTGGTA 256
>seq11
Length=460
Score = 109 bits (120), Expect = 7e-19
Identities = 110/143 (77%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
|||||||| || || || || ||||| || ||||| |||||| | || || || | ||
Sbjct 60 ATGCAAATTTTCGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATCT 119
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
|| ||||| || || | |||| ||| || || ||||||||||| |||||||| |||||
Sbjct 120 GATACAATAGAGAATGTAAAAGGCAAAATACAGGATAAGGAAGGAATTCCACCGGATCAA 179
Query 171982 CAACGACTTATTTTTGCTGGTAA 172004
||||| | || |||||||||||
Sbjct 180 CAACGTTTGATATTTGCTGGTAA 202
>seq2706
Length=224770
Score = 100 bits (110), Expect = 4e-16
Identities = 77/90 (86%), Gaps = 1/90 (1%)
Strand=Plus/Plus
Query 171963 AGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACG 172022
||| |||||||| |||||||| ||||| ||||||||||| ||||||||||||||||||||
Sbjct 73298 AGGGATTCCACCTGATCAGCAGCGACTGATTTTTGCTGGAAAACAGCTTGAAGATGGACG 73357
Query 172023 TACCCTCGCTGATTACAACGTTCA-AAAGG 172051
||| | | |||||||| |||| |||||
Sbjct 73358 TACTTTGTCCGATTACAATATTCAGAAAGG 73387
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 657837985081680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |