Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20nelsoni_20[genbank_20GCA_5F001447455.1_202015-11-24] 2,969 sequences; 47,436,005 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq2516 313 3e-80 seq2680 190 3e-43 seq2371 134 2e-26 seq1187 134 2e-26 seq1292 132 6e-26 seq827 131 2e-25 seq2465 129 8e-25 seq2690 122 1e-22 seq378 113 6e-20 seq11 109 7e-19 seq2706 100 4e-16 >seq2516 Length=768920 Score = 313 bits (346), Expect = 3e-80 Identities = 557/809 (69%), Gaps = 9/809 (1%) Strand=Plus/Minus Query 195299 GCTATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCGT 195358 |||||||| || ||||| || ||||| ||| |||||||| || | || ||| | Sbjct 551782 GCTATTGGAATTGATTTGGGTACTACCTACAGTTGTGTTGGCGTGTTCCAGCATGGTAAA 551723 Query 195359 GTAGAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACA 195418 || || ||||| | || || ||||| || ||||| || ||| || ||||| || || Sbjct 551722 GTTGAAATTATTGCCAACGATCAAGGGAATCGTACCACGCCAAGTTATGTTGCTTTCACC 551663 Query 195419 GATAATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAAT 195478 |||| || || || |||||||||| ||||||||||| || |||| ||| ||| Sbjct 551662 GATACCGAGCGACTGATTGGAGATGCGGCAAAAAATCAAGTTGCGTTGAATCCTCATAAT 551603 Query 195479 ACTGTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGAC 195538 || || ||||| |||||||| || || ||||| ||| ||| || || Sbjct 551602 ACAGTTTTTGATGCGAAGCGACTCATCGGTCGTCGATTTGATGATGCTGCGGTGCAGTCT 551543 Query 195539 GATATAAAGGACTGGTCTTATGAAGTTGTTCCCGGTGTGGCTGAT--AAGCCTATGATTA 195596 ||||| || | ||| | | ||||| | || || ||| || |||| ||| Sbjct 551542 GATATGAAACATTGGCCATTCAAAGTTATCAACGATG-----GATCGAAACCTAAAATTC 551488 Query 195597 ATGTTGAATTTCACGGTGAGAAGAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGT 195656 | || |||| | || ||| ||| |||| | ||||||||||| ||||||||| Sbjct 551487 AAGTCGAATACAAAGGCGAGTCGAAGTCATTTACACCCGAAGAAATCAGTGCTATGGTGT 551428 Query 195657 TGATTAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTG 195716 | | ||||||||||| ||||| ||| ||| |||| |||||||| || ||||| || Sbjct 551427 TAGTGAAGATGAAGGAAACTGCCGAAGCTTATTTGGGAAAAACTGTTAAGGATGCCGTAA 551368 Query 195717 TGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTA 195776 | ||||| || || || || | ||||| || || |||||||| || ||||||| | | Sbjct 551367 TTACTGTTCCGGCATATTTTAACGATTCTCAGCGTCAGGCGACCAAAGACGCTGGAACGA 551308 Query 195777 TTGCGGGTCTAAACTGTCTTA-GAATTATCAATGAACCAACAGCGGCTGCAATTGCTTAT 195835 || | ||| | || ||| || | || ||||| ||||||||||||||||||||||||||| Sbjct 551307 TTTCTGGTTTGAA-TGTTTTGCGTATCATCAACGAACCAACAGCGGCTGCAATTGCTTAT 551249 Query 195836 GGTCTGGACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGT 195895 || || || | || | || || |||||| |||| ||||| || ||||||||| Sbjct 551248 GGACTTGATAGAAAGGGTGGCGGTGAACGAAATGTTCTGATATTTGACCTTGGTGGTGGT 551189 Query 195896 ACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCT 195955 || |||||||| || || | | || |||| ||| || || || || ||| |||| ||| Sbjct 551188 ACTTTTGATGTGTCTATTTTGACCATCGAAGATGGCATTTTTGAGGTCAAGTCTACCGCT 551129 Query 195956 GGTGATACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGTCATTTGTCTGAT 196015 ||||| |||||| | |||||||| || ||||| || | | |||||| | | Sbjct 551128 GGTGACACTCATTTGGGTGGTGAGGACTTCGACAATCGAATGGTAAATCATTTCGTGGCT 551069 Query 196016 GAGTTCCGTCGAAAGAATAAGAAAGATATTTCTGGAAATCCTAGGGCTCTTCGTCGGCTT 196075 ||||| || ||||| ||||| || || || ||||| | || | ||||| | Sbjct 551068 GAGTTTAAGCGCAAGAACAAGAAGGACATGTCATCTAATCCACGCGCATTGCGTCGCTTG 551009 Query 196076 AGGACTGCATGTGAACGTGCCAAACGAAC 196104 | || || |||||||| || || || || Sbjct 551008 CGCACAGCTTGTGAACGAGCGAAGCGCAC 550980 Score = 114 bits (126), Expect = 2e-20 Identities = 180/255 (71%), Gaps = 2/255 (1%) Strand=Plus/Minus Query 196151 GACGGAATTGACTTCTATACAACTATTACCCGTGCACGTTTTGAAGAGTTAAACTCTGAT 196210 || || ||||| ||||| || ||||||||| | || || || |||||||| || |||| Sbjct 550878 GAAGGCATTGATTTCTACACCACTATTACCAGAGCTCGCTTCGAAGAGTTGAATGCTGAC 550819 Query 196211 TTGTTTAGGAAGTGTATGGAACCTGTTGAACAAGTACTTCGTGACGCAAAGATGGATAAG 196270 ||||| | | ||||||| || ||| ||| ||||||||||| || | || || Sbjct 550818 TTGTTCCGTTCTACTTTGGAACCAGTAGAAAAAGCTCTTCGTGACGCGAAATTAGACAAA 550759 Query 196271 TCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATCAACCCGTATTCCGAAGATTCAACAG 196330 | | || ||||| |||| | ||||| ||||| || || ||||| || |||| || Sbjct 550758 GCAGTGATTCATGAAGTTGTTTTGGTGGGTGGATCTACTCGCATTCCTAAAGTTCAGAAG 550699 Query 196331 ATGCTTTCTAG-CTTCTTCAATAATAAAGATTTAAACAAAACGATCAACCCGGATGAAGC 196389 || || | || || || ||| ||||| | ||||||| ||||| || || ||||| Sbjct 550698 TTG-TTGCAAGATTTTTTTAATGGGAAAGAACTTAACAAAAGCATCAATCCAGACGAAGC 550640 Query 196390 AGTTGCTTATGGTGC 196404 ||||| ||||| || Sbjct 550639 TGTTGCCTATGGAGC 550625 Score = 84.2 bits (92), Expect = 3e-11 Identities = 189/279 (68%), Gaps = 4/279 (1%) Strand=Plus/Minus Query 196652 CTTGGAACTTTCGATTTGACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAAT 196711 ||||||| ||||| ||||| || || ||| |||| || | ||||||||||| ||| | Sbjct 550240 CTTGGAAAGTTCGAGTTGACTGGAATCCCACCTGCTCCACGTGGTGTTCCACAAATTGAA 550181 Query 196712 GTTTGCTTCGATATAGACGCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCT 196771 ||| || || || || || || || ||| | ||||| | || | ||||| | | Sbjct 550180 GTTACGTTTGACATCGATGCCAACGGCATTTTGAACGTTTCTGCCGTTGACAAAAGTACC 550121 Query 196772 GGCAAATCTGAA-AAGATTGTGATTACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAAT 196830 ||| || || || || ||||| |||||||| || |||||| || ||||| || Sbjct 550120 GGC-CGTCAAAACAAAATCACCATTACTAATGACAAAGGTCGGCTTAGCAAAGAGGACAT 550062 Query 196831 TGAACGTATGGTTCAAGATGCGGAAAAGTACAGGGAAGAAGACGAGGTATATGAGAAACA 196890 || |||||||| | ||| || || | || | | ||||| || | |||| || Sbjct 550061 CGATCGTATGGTGCGAGAAGCCGACCAATATAAACAGGAAGATGA-AAAGCAGAGAGACC 550003 Query 196891 G-ATGAAAGCTATAAATGATCTAGAAAATTCTACTTATA 196928 | || |||| | ||||| ||| |||| || | ||| || Sbjct 550002 GTATTCAAGCGAAAAATGGTCTGGAAAGTTATGCTTTTA 549964 >seq2680 Length=639 Score = 190 bits (210), Expect = 3e-43 Identities = 182/233 (78%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 171857 GTAGTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGT 171916 || ||||||| || ||||| || || ||||| || || || |||||||| ||||| ||| Sbjct 373 GTGGTATGCAGATTTTTGTCAAGACTCTTACAGGGAAGACCATCACCCTTGAGGTGGAGA 432 Query 171917 CGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCG 171976 |||||||| || || || | || |||||||||||||| ||||| || |||||||| | Sbjct 433 GCTCAGACACCATTGACAATGTGAAGGCCAAGATTCAAGACAAGGAGGGGATTCCACCAG 492 Query 171977 ATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATT 172036 | ||||| | ||||| ||||| || || ||||| || ||||| |||||||| || || | Sbjct 493 ACCAGCAGAGGCTTATCTTTGCCGGCAAGCAGCTCGAGGATGGGCGTACCCTGGCAGACT 552 Query 172037 ACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089 |||| | || ||||||||||| || |||||||| || | ||||| |||||| Sbjct 553 ACAATATCCAGAAGGAGTCTACCCTTCACCTTGTCCTCCGTCTTCGTGGTGGT 605 Score = 98.7 bits (108), Expect = 1e-15 Identities = 110/147 (75%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 171943 GCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGT 172002 ||||||||||| || ||||| || || || || || || || || || || ||||| || Sbjct 3 GCCAAGATTCAGGACAAGGAGGGAATCCCCCCGGACCAACAGCGTCTGATCTTTGCCGGA 62 Query 172003 AAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTA 172062 || |||||||| ||||| || ||||| || ||||||||| | || ||||| || || || Sbjct 63 AAGCAGCTTGAGGATGGCCGCACCCTGGCAGATTACAACATCCAGAAGGAATCCACCCTT 122 Query 172063 CACCTTGTTCTAAGGCTTCGGGGTGGT 172089 || | || || | || || |||||| Sbjct 123 CATTTGGTGCTTCGTCTCCGTGGTGGT 149 >seq2371 Length=372962 Score = 134 bits (148), Expect = 2e-26 Identities = 321/484 (66%), Gaps = 6/484 (1%) Strand=Plus/Plus Query 195333 GTGTTGGTGTATGGCAAAATGATCGTGTAGAGATTATCCCGAATGACCAAGGAAACCGTA 195392 ||||||| || | | |||| |||||| || ||||| | ||||| || || || || | Sbjct 120926 GTGTTGGGGTTTTCAAGAATGGTCGTGTTGAAATTATTGCCAATGATCAGGGCAATCGGA 120985 Query 195393 CAACTCCATCGTACGTTGCCTTTACA---GATAATGAACGTCTCGTTGGAGATGCCGCAA 195449 || || ||||| || || ||||| || || ||||| | || || ||||| | Sbjct 120986 TCACCCCGTCGTATGTAGCTTTTACGCCGGAAGGGGAGCGTCTGATCGGCGACGCCGCGA 121045 Query 195450 AAAATCAGACAGCTATGAACCCTATCAATACTGTCTTTGACGCGAAGCGTCTTATTGGTC 195509 |||||||| | | || ||| ||||| || || ||||| |||||| | | |||| Sbjct 121046 AAAATCAGTTGACCACTAATCCTGAGAATACGGTATTCGACGCAAAGCGTATGGTCGGTC 121105 Query 195510 GCAAGTTTTCGGATAAGAAAGTCCAAGACGATATAAAGGACTGGTCTTATGAAGTTGTTC 195569 | | | |||||||||| | |||| ||| || ||| | | || || ||| Sbjct 121106 GAGAATGGTCGGATAAGAGTCTTCAAGCGGATCGTAAAATGTGGCCATTTGCGGTGGTT- 121164 Query 195570 CCGGTGTGGCTGATAAGCCTATGATTAATGTTGAATTTCACGGTGAGAAGAAACAATTTG 195629 | | | || || | || | || || ||||||| |||||| || Sbjct 121165 --GAAAAATCGAACAAACCGAACGTTCAACTTACTGTTAACGGTGAAAAGAAATTGTTCA 121222 Query 195630 CTCCCGAAGAAATTTCGTCTATGGTGTTGATTAAGATGAAGGAGACTGCGGAATCTTTCA 195689 |||||||||||||||| | ||||| ||| | || ||||| || | ||| ||| ||| Sbjct 121223 CTCCCGAAGAAATTTCAGCGATGGTTTTGTTGAAAATGAAAGAAATTGCCGAAGCTTATT 121282 Query 195690 TGGGTAAAACTGTGAAAGATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAAC 195749 |||| ||| |||||| |||| || || || || || ||||| |||| ||| |||||| Sbjct 121283 TGGGCAAAGAAGTGAAAAATGCCGTCGTCACCGTTCCCGCTTATTTCAACGATGCACAAC 121342 Query 195750 GACAGGCGACAAAGGACGCTGCTGCTATTGCGGGTCTAAACTGTCTTAGAATTATCAATG 195809 | || || || || || || | | ||||| ||||| || | || |||| ||||| | Sbjct 121343 GTCAAGCTACCAAAGATGCGGGCACCATTGCTGGTCTTAATGTTGTTCGAATCATCAACG 121402 Query 195810 AACC 195813 |||| Sbjct 121403 AACC 121406 Score = 114 bits (126), Expect = 2e-20 Identities = 331/503 (66%), Gaps = 10/503 (2%) Strand=Plus/Plus Query 196373 ATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCTCAGGT 196432 ||||| || || ||||| || ||||| ||||| || || ||||||| || | || ||| Sbjct 122155 ATCAATCCAGACGAAGCTGTCGCTTACGGTGCTGCGGTCCAGGCTGGCGTTATTTCCGGT 122214 Query 196433 GTTGACAATAATAACGTCCAAGATCTTCTGCTACTTGATGTTGCACCCGTATCCCTGGGT 196492 | || | | | || |||||| |||| | || || || | | |||| Sbjct 122215 GAAGAAGACACTG--GT----GATCTTGTGCTGTTGGACGTCAATCCGTTGACTTTGGGA 122268 Query 196493 CTTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACACAACTATTCCGACT 196552 ||||||| | || || || ||||| || | ||| ||||| || | ||||| Sbjct 122269 ATTGAAACTGTCGGCGGAGTGATGACGAAGCTGATTCCCAGGAATACGGTAGTGCCGACC 122328 Query 196553 AAGAAGGAACAAGTCTTTT-CAACGTATTCCGATAATCAACCAGGTGTTCATATTCAAGT 196611 ||||| || | || || || | |||| ||||| || ||| ||||||||| Sbjct 122329 AAGAAATCCCAGATATTCAGCACCGCAG-CCGACAATCAGCCCACAGTTACTATTCAAGT 122387 Query 196612 ATATGAAGGAGAACGCTCCCGTG-CAAAGGATAACCATCTACTTGGAACTTTCGATTTGA 196670 | ||||| ||||| || || | || || |||||||| ||||| | |||||| ||| Sbjct 122388 TTTCGAAGGCGAACGA-CCAATGACCAAAGACAACCATCTTCTTGGGAAATTCGATCTGA 122446 Query 196671 CGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCGATATAGACG 196730 | || || || | || || | || || ||||| ||| | ||| |||||||| |||| Sbjct 122447 CCGGCATACCTCCGGCTCCGCGTGGGGTACCACAAATTGAAGTTACATTCGATATCGACG 122506 Query 196731 CAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCTGAAAAGATTG 196790 || || ||| | ||||||| || || ||||| | | | ||||| | ||||| Sbjct 122507 TGAACGGCATTTTGCACGTCACCGCCGAAGACAAAGGTACCGGCAACAAGAACAAGATCA 122566 Query 196791 TGATTACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTGAACGTATGGTTCAAGATG 196850 |||||||||||| | || || || ||| || ||||| || ||| | | |||| Sbjct 122567 CCATTACCAATGACCACAATCGTCTGTCGCCGGAAGATATTGACCGCATGATCAACGATG 122626 Query 196851 CGGAAAAGTACAGGGAAGAAGAC 196873 | ||||| || |||||| ||| Sbjct 122627 CCGAAAAATATGCGGAAGAGGAC 122649 Score = 89.7 bits (98), Expect = 7e-13 Identities = 116/160 (73%), Gaps = 3/160 (2%) Strand=Plus/Plus Query 195814 AACAGCGGCTGCAATTGCTTATGGTCTGGACAAGAACAAGGACGAAGATAAAAATGTATT 195873 ||| || ||||||||||| || ||||| ||||| || ||| |||| |||||| | || Sbjct 121459 AACTGCTGCTGCAATTGCATACGGTCTTGACAAAAAGGAGGGCGAA---AAAAATATTTT 121515 Query 195874 GATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTAT 195933 | | ||||| || ||||| ||||| || || | | || | |||||| |||| | Sbjct 121516 AGTTTACGATCTTGGAGGTGGAACGTTCGACGTTACTTTGCTTACTATTGACAATGGTGT 121575 Query 195934 ATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGT 195973 |||||||| | ||||| ||||||||||||| | ||| Sbjct 121576 TTTCGAAGTGCTGTCTACTAATGGTGATACTCATTTGGGT 121615 >seq1187 Length=25466 Score = 134 bits (148), Expect = 2e-26 Identities = 115/142 (81%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || ||||||||||| | || |||||||| || || || || |||||| ||||| Sbjct 20569 ATGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCA 20628 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || ||||| || || | ||| |||||||||||| || |||||||| ||||| ||||| Sbjct 20629 GATACAATTGAAAATGTAAAAAGCAAGATTCAAGACAAAGAAGGCATCCCACCGGATCAA 20688 Query 171982 CAACGACTTATTTTTGCTGGTA 172003 || || |||||||||||||||| Sbjct 20689 CAGCGGCTTATTTTTGCTGGTA 20710 Score = 122 bits (134), Expect = 1e-22 Identities = 112/142 (79%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| || || || || |||||||||||||| || || | || || || | || Sbjct 21985 ATGCAAATTTTCGTTAAGACTCTTACTGGAAAAACAATAACATTGGAAGTAGAACCATCT 22044 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || ||||| || || | |||| ||| || || ||||||||||| |||||||| |||||| Sbjct 22045 GATACAATAGAGAATGTAAAAGGCAAAATACAGGATAAGGAAGGAATTCCACCAGATCAG 22104 Query 171982 CAACGACTTATTTTTGCTGGTA 172003 ||||| || ||||||||||||| Sbjct 22105 CAACGTCTGATTTTTGCTGGTA 22126 Score = 118 bits (130), Expect = 1e-21 Identities = 112/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || ||||| ||||| || ||||| ||||| || || || || || ||| | ||| Sbjct 20237 ATGCAGATATTTGTCAAAACTCTGACTGGGAAAACCATTACACTGGAAGTGGAGCCCTCA 20296 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| || || || | || | || ||||| ||||| || || |||||||||||||| Sbjct 20297 GACACCATTGAAAATGTGAAGGGTAAAATTCAGGATAAAGAGGGAATTCCACCCGATCAA 20356 Query 171982 CAACGACTTATTTTTGCTGGTAA 172004 ||||| || |||||||||||||| Sbjct 20357 CAACGTCTGATTTTTGCTGGTAA 20379 Score = 116 bits (128), Expect = 5e-21 Identities = 111/142 (78%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| ||||| || ||||| ||||| ||||| ||||| | || || || | || Sbjct 20851 ATGCAAATTTTTGTTAAGACCCTCACTGGCAAAACCATCACATTGGAAGTGGAACCATCT 20910 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || ||||| || || | |||| || || || ||||| ||||| |||||||| |||||| Sbjct 20911 GATACAATTGAAAATGTGAAAGGGAAAATACAGGATAAAGAAGGAATTCCACCAGATCAG 20970 Query 171982 CAACGACTTATTTTTGCTGGTA 172003 ||||| || ||||||||||||| Sbjct 20971 CAACGTCTGATTTTTGCTGGTA 20992 Score = 116 bits (128), Expect = 5e-21 Identities = 111/142 (78%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| ||||| || ||||| ||||| ||||| ||||| | || || || | || Sbjct 21134 ATGCAAATTTTTGTTAAGACCCTCACTGGCAAAACCATCACATTGGAAGTGGAACCATCT 21193 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || ||||| || || | |||| || || || ||||| ||||| |||||||| |||||| Sbjct 21194 GATACAATTGAAAATGTGAAAGGGAAAATACAGGATAAAGAAGGAATTCCACCAGATCAG 21253 Query 171982 CAACGACTTATTTTTGCTGGTA 172003 ||||| || ||||||||||||| Sbjct 21254 CAACGTCTGATTTTTGCTGGTA 21275 Score = 116 bits (128), Expect = 5e-21 Identities = 111/142 (78%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| ||||| || ||||| ||||| ||||| ||||| | || || || | || Sbjct 21417 ATGCAAATTTTTGTTAAGACCCTCACTGGCAAAACCATCACATTGGAAGTGGAACCATCT 21476 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || ||||| || || | |||| || || || ||||| ||||| |||||||| |||||| Sbjct 21477 GATACAATTGAAAATGTGAAAGGGAAAATACAGGATAAAGAAGGAATTCCACCAGATCAG 21536 Query 171982 CAACGACTTATTTTTGCTGGTA 172003 ||||| || ||||||||||||| Sbjct 21537 CAACGTCTGATTTTTGCTGGTA 21558 Score = 113 bits (124), Expect = 6e-20 Identities = 110/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| ||||| || ||||| ||||| ||||| ||||| | || || || | || Sbjct 21700 ATGCAAATTTTTGTTAAGACCCTCACTGGCAAAACCATCACATTGGAAGTGGAACCATCT 21759 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || ||||| || || | |||| || || || ||||||||||| |||||||| ||||| Sbjct 21760 GATACAATTGAAAATGTGAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCAA 21819 Query 171982 CAACGACTTATTTTTGCTGGTA 172003 ||||| | ||||||||||||| Sbjct 21820 CAACGTTTGATTTTTGCTGGTA 21841 Score = 107 bits (118), Expect = 3e-18 Identities = 109/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| ||||| || ||||| ||||| ||||| ||||| | || || || | || Sbjct 22268 ATGCAAATTTTTGTTAAGACCCTCACTGGCAAAACCATCACATTGGAAGTGGAACCATCT 22327 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || ||||| || || | |||| || || || ||||| ||||| |||||||| |||||| Sbjct 22328 GATACAATTGAAAATGTGAAAGGGAAAATACAGGATAAAGAAGGAATTCCACCAGATCAG 22387 Query 171982 CAACGACTTATTTTTGCTGGTA 172003 ||||| | || |||||||||| Sbjct 22388 CAACGTTTGATATTTGCTGGTA 22409 >seq1292 Length=279 Score = 132 bits (146), Expect = 6e-26 Identities = 141/186 (76%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 171904 CTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAA 171963 || ||||||||| || || ||||| |||||| |||| |||||||| || ||||||||| Sbjct 279 CTGGAGGTTGAGAGCTCCGATACAATTGATAACGTCAAGGCCAAGATCCAGGATAAGGAA 220 Query 171964 GGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGT 172023 || || ||||| |||||||| | | || || || || || ||||| || || || | Sbjct 219 GGGATCCCACCGGATCAGCAGAGGTTGATCTTCGCCGGAAAGCAGCTCGAGGACGGTAGG 160 Query 172024 ACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGG 172083 ||| | |||||||||||| |||| |||||||| || || || | || || | ||||| Sbjct 159 ACCTTGGCTGATTACAACATTCAGAAGGAGTCAACCCTCCATTTGGTGCTCCGTCTTCGC 100 Query 172084 GGTGGT 172089 |||||| Sbjct 99 GGTGGT 94 Score = 107 bits (118), Expect = 3e-18 Identities = 82/97 (85%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 171857 GTAGTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGT 171916 || ||||||| ||||||||||| |||||||| || || || |||||||||||||||||| Sbjct 98 GTGGTATGCAGATCTTTGTGAAGACCCTTACCGGGAAGACCATCACCCTCGAGGTTGAGA 39 Query 171917 CGTCAGACACAATCGATAACATCAAAGCCAAGATTCA 171953 || |||||||| |||||| |||| |||||||| || Sbjct 38 GCTCCGACACAATTGATAACGTCAAGGCCAAGATCCA 2 >seq827 Length=57960 Score = 131 bits (144), Expect = 2e-25 Identities = 114/142 (80%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || ||||||||||| | || |||||||| || || || || |||||| | ||| Sbjct 31555 ATGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCATCA 31496 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || ||||| || || | ||| |||||||||||| || |||||||| ||||| ||||| Sbjct 31495 GATACAATTGAAAATGTAAAAAGCAAGATTCAAGACAAAGAAGGCATCCCACCGGATCAA 31436 Query 171982 CAACGACTTATTTTTGCTGGTA 172003 || || |||||||||||||||| Sbjct 31435 CAGCGGCTTATTTTTGCTGGTA 31414 Score = 122 bits (134), Expect = 1e-22 Identities = 115/147 (78%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| || || || ||||||||||||||||| || || | || || || | || Sbjct 30919 ATGCAAATTTTCGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATCT 30860 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || ||||| || || | |||| ||| ||||||||||| || || |||||||| ||||| Sbjct 30859 GATACAATAGAAAATGTGAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCGGATCAA 30800 Query 171982 CAACGACTTATTTTTGCTGGTAAACAG 172008 ||||| | |||||||||||||| ||| Sbjct 30799 CAACGTTTGATTTTTGCTGGTAAGCAG 30773 Score = 114 bits (126), Expect = 2e-20 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || ||||||||||| || ||||| ||||| || || || || || || | | | Sbjct 31887 ATGCAGATATTTGTGAAAACTCTGACTGGGAAAACCATTACTCTGGAAGTGGAACCCTTA 31828 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||| |||| || || | |||| || ||||| ||||| || || |||||||||||||| Sbjct 31827 GACTCAATTGAAAATGTGAAAGGTAAAATTCAGGATAAAGAGGGAATTCCACCCGATCAA 31768 Query 171982 CAACGACTTATTTTTGCTGGTAA 172004 || || || |||||||||||||| Sbjct 31767 CAGCGTCTGATTTTTGCTGGTAA 31745 Score = 113 bits (124), Expect = 6e-20 Identities = 113/147 (77%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| || || || || |||||||||||||| || || | || || || || Sbjct 30637 ATGCAAATTTTCGTTAAGACTCTTACTGGAAAAACAATAACTTTGGAAGTAGAACTATCT 30578 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || ||||| || || | |||| ||| ||||||||||| || || |||||||| ||||| Sbjct 30577 GATACAATAGAAAATGTGAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCGGATCAA 30518 Query 171982 CAACGACTTATTTTTGCTGGTAAACAG 172008 ||||| | |||||||||||||| ||| Sbjct 30517 CAACGTTTGATTTTTGCTGGTAAGCAG 30491 Score = 109 bits (120), Expect = 7e-19 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| || || || || |||||||||||||| || || | || || || || Sbjct 30355 ATGCAAATTTTCGTTAAGACTCTTACTGGAAAAACAATAACTTTGGAAGTAGAACTATCT 30296 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || ||||| || || | |||| ||| ||||||||||| || || |||||||| ||||| Sbjct 30295 GATACAATAGAAAATGTGAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCGGATCAA 30236 Query 171982 CAACGACTTATTTTTGCTGGTAA 172004 ||||| | |||||||||||||| Sbjct 30235 CAACGTTTGATTTTTGCTGGTAA 30213 Score = 107 bits (118), Expect = 3e-18 Identities = 109/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| ||||| || ||||| ||||| ||||| ||||| | || || || | || Sbjct 55631 ATGCAAATTTTTGTTAAGACCCTCACTGGCAAAACCATCACATTGGAAGTGGAACCATCT 55572 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || ||||| || || | |||| || || || ||||| ||||| |||||||| |||||| Sbjct 55571 GATACAATTGAAAATGTGAAAGGGAAAATACAGGATAAAGAAGGAATTCCACCAGATCAG 55512 Query 171982 CAACGACTTATTTTTGCTGGTA 172003 ||||| | || |||||||||| Sbjct 55511 CAACGTTTGATATTTGCTGGTA 55490 Score = 104 bits (114), Expect = 3e-17 Identities = 108/142 (76%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| ||||| || ||||| ||||| || || ||||| | || || || | || Sbjct 29768 ATGCAAATTTTTGTTAAGACCCTAACTGGGAAGACCATCACGTTGGAAGTGGAACCATCT 29709 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || || | || || | |||| ||||||||||||||||| || ||||| || ||||| Sbjct 29708 GATACTGTTGAGAATGTGAAAGGGAAGATTCAAGATAAGGAGGGAATTCCTCCAGATCAA 29649 Query 171982 CAACGACTTATTTTTGCTGGTA 172003 || || || ||||||||||||| Sbjct 29648 CAGCGTCTGATTTTTGCTGGTA 29627 >seq2465 Length=325902 Score = 129 bits (142), Expect = 8e-25 Identities = 115/144 (80%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 171861 TATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTC 171920 |||||| || || ||||| || ||||||||||||||||| || || || ||||| | || Sbjct 18021 TATGCAGATATTCGTGAAGACACTTACTGGAAAAACTATAACACTAGAAGTTGAACCATC 17962 Query 171921 AGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCA 171980 |||||| ||||| || | ||| || ||||| ||||||||||||||||| || ||||| Sbjct 17961 AGACACCATCGAAAATGTTAAAAGTAAAATTCAGGATAAGGAAGGCATTCCTCCTGATCA 17902 Query 171981 GCAACGACTTATTTTTGCTGGTAA 172004 |||| || | || ||||| ||||| Sbjct 17901 GCAAAGATTAATCTTTGCAGGTAA 17878 Score = 127 bits (140), Expect = 3e-24 Identities = 114/143 (80%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || ||||||||||| | ||||||||||| ||||| | ||||| ||| | || Sbjct 17056 ATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAGGTAGAGCCTTCG 16997 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| || || || | ||| ||| |||||||| || |||||||||||||| |||||| Sbjct 16996 GACACGATTGAAAATGTGAAAAGCAAAATTCAAGACAAAGAAGGCATTCCACCTGATCAG 16937 Query 171982 CAACGACTTATTTTTGCTGGTAA 172004 || ||| | || ||||||||||| Sbjct 16936 CAGCGATTGATATTTGCTGGTAA 16914 Score = 125 bits (138), Expect = 9e-24 Identities = 114/144 (79%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 171860 GTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGT 171919 ||||||| || ||||||||||| | ||||||||||| ||||| | || || ||| | | Sbjct 17344 GTATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCAT 17285 Query 171920 CAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATC 171979 | || || || || || | ||| || ||||||||||||||||||||||| || |||| Sbjct 17284 CTGATACGATTGAAAATGTGAAAAGTAAAATTCAAGATAAGGAAGGCATTCCGCCTGATC 17225 Query 171980 AGCAACGACTTATTTTTGCTGGTA 172003 |||||||| | || |||||||||| Sbjct 17224 AGCAACGATTGATATTTGCTGGTA 17201 >seq2690 Length=629 Score = 122 bits (134), Expect = 1e-22 Identities = 141/190 (74%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 196673 GGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCGATATAGACGCA 196732 || ||||| | ||||| || || || || ||||| | ||||||||| || || || ||| Sbjct 600 GGCATTCCTCCAGCACCTAGGGGAGTCCCTCAGATCACTGTTTGCTTTGACATTGATGCA 541 Query 196733 AATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCTGAAAAGATTGTG 196792 ||||| ||||| || ||| | |||||||||||| | ||||| | | |||||| Sbjct 540 AATGGCATTCTCAATGTCTCTGCTGAGGACAAGACAACTGGCCAGAAGAACAAGATTACA 481 Query 196793 ATTACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTGAACGTATGGTTCAAGATGCG 196852 || || ||||||||||| | || || |||||||| ||||| ||||| ||||| ||| Sbjct 480 ATCACTAATGACAAGGGAAGACTGTCCAAGGAGGAGATTGAGAAGATGGTGCAAGAAGCG 421 Query 196853 GAAAAGTACA 196862 || || |||| Sbjct 420 GAGAAATACA 411 >seq378 Length=398 Score = 113 bits (124), Expect = 6e-20 Identities = 110/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| || || || || ||||| || ||||| |||||| | || || || | || Sbjct 115 ATGCAAATTTTCGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATCT 174 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || ||||| || || | |||| ||| || || ||||||||||| |||||||| |||||| Sbjct 175 GATACAATAGAGAATGTAAAAGGCAAAATACAGGATAAGGAAGGAATTCCACCAGATCAG 234 Query 171982 CAACGACTTATTTTTGCTGGTA 172003 ||||| | || |||||||||| Sbjct 235 CAACGTTTGATATTTGCTGGTA 256 >seq11 Length=460 Score = 109 bits (120), Expect = 7e-19 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| || || || || ||||| || ||||| |||||| | || || || | || Sbjct 60 ATGCAAATTTTCGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATCT 119 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || ||||| || || | |||| ||| || || ||||||||||| |||||||| ||||| Sbjct 120 GATACAATAGAGAATGTAAAAGGCAAAATACAGGATAAGGAAGGAATTCCACCGGATCAA 179 Query 171982 CAACGACTTATTTTTGCTGGTAA 172004 ||||| | || ||||||||||| Sbjct 180 CAACGTTTGATATTTGCTGGTAA 202 >seq2706 Length=224770 Score = 100 bits (110), Expect = 4e-16 Identities = 77/90 (86%), Gaps = 1/90 (1%) Strand=Plus/Plus Query 171963 AGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACG 172022 ||| |||||||| |||||||| ||||| ||||||||||| |||||||||||||||||||| Sbjct 73298 AGGGATTCCACCTGATCAGCAGCGACTGATTTTTGCTGGAAAACAGCTTGAAGATGGACG 73357 Query 172023 TACCCTCGCTGATTACAACGTTCA-AAAGG 172051 ||| | | |||||||| |||| ||||| Sbjct 73358 TACTTTGTCCGATTACAATATTCAGAAAGG 73387 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657837985081680