Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20nelsoni_20[genbank_20GCA_5F001447455.1_202015-11-24]
2,969 sequences; 47,436,005 total letters
Query= NC_021246.1
Length=281182
Score E
Sequences producing significant alignments: (Bits) Value
seq2465 116 7e-21
seq827 104 4e-17
seq1187 93.3 8e-14
>seq2465
Length=325902
Score = 116 bits (128), Expect = 7e-21
Identities = 121/159 (76%), Gaps = 0/159 (0%)
Strand=Plus/Plus
Query 193218 TTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTG 193277
|| || ||||| |||||||| || ||||||||||| || ||||| ||||| || |||||
Sbjct 17878 TTACCTGCAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAATTTTA 17937
Query 193278 GTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTT 193337
|||| | |||| || || || || | ||||||||||| ||||||||||| || ||
Sbjct 17938 CTTTTAACATTTTCGATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAGTA 17997
Query 193338 AGCGTTTTTACAAATATTTGCATTTTATTAGTAAAATAA 193376
|| || || || ||||| ||||| | | | |||| |||
Sbjct 17998 AGTGTCTTCACGAATATCTGCATAATTTGAATAAATTAA 18036
>seq827
Length=57960
Score = 104 bits (114), Expect = 4e-17
Identities = 111/147 (76%), Gaps = 0/147 (0%)
Strand=Plus/Plus
Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274
|| || || |||||||| || | |||||||| || || ||||| ||||||||||| |||
Sbjct 30774 TGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATT 30833
Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334
||| ||| | |||| || ||||| || | || ||||| | |||||| ||||| ||
Sbjct 30834 TTGCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCCA 30893
Query 193335 GTTAGCGTTTTTACAAATATTTGCATT 193361
|| || || || || || |||||||||
Sbjct 30894 GTAAGGGTCTTAACGAAAATTTGCATT 30920
Score = 98.7 bits (108), Expect = 2e-15
Identities = 108/144 (75%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 193218 TTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTG 193277
|| || |||||||| || | |||||||| || || ||||| ||||||||||| ||||||
Sbjct 30213 TTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATTTTG 30272
Query 193278 GTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTT 193337
||| | |||| || ||||| || || ||||| | |||||| ||||| || ||
Sbjct 30273 CCTTTCACATTTTCTATTGTATCAGATAGTTCTACTTCCAAAGTTATTGTTTTTCCAGTA 30332
Query 193338 AGCGTTTTTACAAATATTTGCATT 193361
|| || || || || |||||||||
Sbjct 30333 AGAGTCTTAACGAAAATTTGCATT 30356
Score = 98.7 bits (108), Expect = 2e-15
Identities = 110/147 (75%), Gaps = 0/147 (0%)
Strand=Plus/Plus
Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274
|| || || |||||||| || | |||||||| || || ||||| ||||||||||| |||
Sbjct 30492 TGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATT 30551
Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334
||| ||| | |||| || ||||| || || ||||| | |||||| ||||| ||
Sbjct 30552 TTGCCTTTCACATTTTCTATTGTATCAGATAGTTCTACTTCCAAAGTTATTGTTTTTCCA 30611
Query 193335 GTTAGCGTTTTTACAAATATTTGCATT 193361
|| || || || || || |||||||||
Sbjct 30612 GTAAGAGTCTTAACGAAAATTTGCATT 30638
Score = 93.3 bits (102), Expect = 8e-14
Identities = 105/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 193221 CCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTT 193280
|| ||||| || || | || ||||| || || |||||||||||||| |||||||| |
Sbjct 55492 CCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCCTGTATTTTCCCT 55551
Query 193281 TTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGC 193340
|| | |||| ||| ||||| || | || ||||| | || || ||||| || || ||
Sbjct 55552 TTCACATTTTCAATTGTATCAGATGGTTCCACTTCCAATGTGATGGTTTTGCCAGTGAGG 55611
Query 193341 GTTTTTACAAATATTTGCATT 193361
|| || ||||| |||||||||
Sbjct 55612 GTCTTAACAAAAATTTGCATT 55632
>seq1187
Length=25466
Score = 93.3 bits (102), Expect = 8e-14
Identities = 105/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 193221 CCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTT 193280
|| |||||||| | | || ||||| || || |||||||||||||| |||||||| |
Sbjct 20990 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCCTGTATTTTCCCT 20931
Query 193281 TTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGC 193340
|| | |||| ||| ||||| || | || ||||| | || || ||||| || || ||
Sbjct 20930 TTCACATTTTCAATTGTATCAGATGGTTCCACTTCCAATGTGATGGTTTTGCCAGTGAGG 20871
Query 193341 GTTTTTACAAATATTTGCATT 193361
|| || ||||| |||||||||
Sbjct 20870 GTCTTAACAAAAATTTGCATT 20850
Score = 93.3 bits (102), Expect = 8e-14
Identities = 105/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 193221 CCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTT 193280
|| |||||||| | | || ||||| || || |||||||||||||| |||||||| |
Sbjct 21273 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCCTGTATTTTCCCT 21214
Query 193281 TTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGC 193340
|| | |||| ||| ||||| || | || ||||| | || || ||||| || || ||
Sbjct 21213 TTCACATTTTCAATTGTATCAGATGGTTCCACTTCCAATGTGATGGTTTTGCCAGTGAGG 21154
Query 193341 GTTTTTACAAATATTTGCATT 193361
|| || ||||| |||||||||
Sbjct 21153 GTCTTAACAAAAATTTGCATT 21133
Score = 93.3 bits (102), Expect = 8e-14
Identities = 105/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 193221 CCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTT 193280
|| |||||||| | | || ||||| || || |||||||||||||| |||||||| |
Sbjct 21556 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCCTGTATTTTCCCT 21497
Query 193281 TTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGC 193340
|| | |||| ||| ||||| || | || ||||| | || || ||||| || || ||
Sbjct 21496 TTCACATTTTCAATTGTATCAGATGGTTCCACTTCCAATGTGATGGTTTTGCCAGTGAGG 21437
Query 193341 GTTTTTACAAATATTTGCATT 193361
|| || ||||| |||||||||
Sbjct 21436 GTCTTAACAAAAATTTGCATT 21416
Score = 93.3 bits (102), Expect = 8e-14
Identities = 105/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 193221 CCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTT 193280
|| ||||| || || | || ||||| || || |||||||||||||| |||||||| |
Sbjct 22407 CCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCCTGTATTTTCCCT 22348
Query 193281 TTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGC 193340
|| | |||| ||| ||||| || | || ||||| | || || ||||| || || ||
Sbjct 22347 TTCACATTTTCAATTGTATCAGATGGTTCCACTTCCAATGTGATGGTTTTGCCAGTGAGG 22288
Query 193341 GTTTTTACAAATATTTGCATT 193361
|| || ||||| |||||||||
Sbjct 22287 GTCTTAACAAAAATTTGCATT 22267
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 899621011576080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |