Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20nelsoni_20[genbank_20GCA_5F001447455.1_202015-11-24]
2,969 sequences; 47,436,005 total letters
Query= NC_021247.1
Length=228750
Score E
Sequences producing significant alignments: (Bits) Value
seq2465 122 1e-22
seq1187 109 8e-19
seq827 109 8e-19
>seq2465
Length=325902
Score = 122 bits (134), Expect = 1e-22
Identities = 112/142 (79%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||||| || ||| | |||||||| ||||||||||| || ||||| ||||| || |||
Sbjct 17342 ATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATCT 17283
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|||| ||| ||| ||||||| |||||| |||||||| |||||||| || || || ||
Sbjct 17282 GATACGATTGAAAATGTGAAAAGTAAAATTCAAGATAAGGAAGGCATTCCGCCTGATCAG 17223
Query 155943 CAAAGATTGATTTATGCCGGTA 155964
||| ||||||| | ||| ||||
Sbjct 17222 CAACGATTGATATTTGCTGGTA 17201
Score = 107 bits (118), Expect = 3e-18
Identities = 110/144 (76%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881
|||||| || ||| | |||||||| ||||||||||| || ||||| || || || |||
Sbjct 17057 AATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAGGTAGAGCCTTC 16998
Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941
|| | ||| ||| ||||||| ||||| ||||| ||||||||||| || || || ||
Sbjct 16997 GGACACGATTGAAAATGTGAAAAGCAAAATTCAAGACAAAGAAGGCATTCCACCTGATCA 16938
Query 155942 ACAAAGATTGATTTATGCCGGTAA 155965
|| ||||||| | ||| |||||
Sbjct 16937 GCAGCGATTGATATTTGCTGGTAA 16914
Score = 105 bits (116), Expect = 1e-17
Identities = 119/158 (75%), Gaps = 1/158 (1%)
Strand=Plus/Minus
Query 155808 AATTTATGTAATAAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTA 155867
||||||| || | ||||| ||||| | || ||| | |||||||||||||| ||| ||
Sbjct 18034 AATTTATTCAA-ATTATGCAGATATTCGTGAAGACACTTACTGGAAAAACTATAACACTA 17976
Query 155868 GAAGTCGAAGATTCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGC 155927
||||| ||| || || | || ||| || |||| |||||| || ||||| ||||||
Sbjct 17975 GAAGTTGAACCATCAGACACCATCGAAAATGTTAAAAGTAAAATTCAGGATAAGGAAGGC 17916
Query 155928 ATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAA 155965
|| ||||| || || |||||||| || | ||| |||||
Sbjct 17915 ATTCCTCCTGATCAGCAAAGATTAATCTTTGCAGGTAA 17878
>seq1187
Length=25466
Score = 109 bits (120), Expect = 8e-19
Identities = 110/143 (77%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881
||||||||| ||| |||| || | ||||| ||||| || ||||| ||||| ||| ||
Sbjct 20850 AATGCAAATTTTTGTTAAGACCCTCACTGGCAAAACCATCACATTGGAAGTGGAACCATC 20909
Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941
||||| ||| ||| |||||| |||||||| ||||||||||| || || ||||| ||
Sbjct 20910 TGATACAATTGAAAATGTGAAAGGGAAAATACAGGATAAAGAAGGAATTCCACCAGATCA 20969
Query 155942 ACAAAGATTGATTTATGCCGGTA 155964
||| | |||||| ||| ||||
Sbjct 20970 GCAACGTCTGATTTTTGCTGGTA 20992
Score = 109 bits (120), Expect = 8e-19
Identities = 110/143 (77%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881
||||||||| ||| |||| || | ||||| ||||| || ||||| ||||| ||| ||
Sbjct 21133 AATGCAAATTTTTGTTAAGACCCTCACTGGCAAAACCATCACATTGGAAGTGGAACCATC 21192
Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941
||||| ||| ||| |||||| |||||||| ||||||||||| || || ||||| ||
Sbjct 21193 TGATACAATTGAAAATGTGAAAGGGAAAATACAGGATAAAGAAGGAATTCCACCAGATCA 21252
Query 155942 ACAAAGATTGATTTATGCCGGTA 155964
||| | |||||| ||| ||||
Sbjct 21253 GCAACGTCTGATTTTTGCTGGTA 21275
Score = 109 bits (120), Expect = 8e-19
Identities = 110/143 (77%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881
||||||||| ||| |||| || | ||||| ||||| || ||||| ||||| ||| ||
Sbjct 21416 AATGCAAATTTTTGTTAAGACCCTCACTGGCAAAACCATCACATTGGAAGTGGAACCATC 21475
Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941
||||| ||| ||| |||||| |||||||| ||||||||||| || || ||||| ||
Sbjct 21476 TGATACAATTGAAAATGTGAAAGGGAAAATACAGGATAAAGAAGGAATTCCACCAGATCA 21535
Query 155942 ACAAAGATTGATTTATGCCGGTA 155964
||| | |||||| ||| ||||
Sbjct 21536 GCAACGTCTGATTTTTGCTGGTA 21558
Score = 109 bits (120), Expect = 8e-19
Identities = 110/143 (77%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881
||||||||| ||| |||| || | ||||| ||||| || ||||| ||||| ||| ||
Sbjct 22267 AATGCAAATTTTTGTTAAGACCCTCACTGGCAAAACCATCACATTGGAAGTGGAACCATC 22326
Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941
||||| ||| ||| |||||| |||||||| ||||||||||| || || ||||| ||
Sbjct 22327 TGATACAATTGAAAATGTGAAAGGGAAAATACAGGATAAAGAAGGAATTCCACCAGATCA 22386
Query 155942 ACAAAGATTGATTTATGCCGGTA 155964
||| | ||||| | ||| ||||
Sbjct 22387 GCAACGTTTGATATTTGCTGGTA 22409
Score = 95.1 bits (104), Expect = 2e-14
Identities = 108/145 (74%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||||| |||||| | ||||| ||||| |||||||| |||||| | ||||| || ||
Sbjct 20569 ATGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCA 20628
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|||| ||| ||| || |||| || || ||||| ||||||||||| || || || |||
Sbjct 20629 GATACAATTGAAAATGTAAAAAGCAAGATTCAAGACAAAGAAGGCATCCCACCGGATCAA 20688
Query 155943 CAAAGATTGATTTATGCCGGTAAGC 155967
|| | | |||| ||| |||| ||
Sbjct 20689 CAGCGGCTTATTTTTGCTGGTATGC 20713
Score = 91.5 bits (100), Expect = 2e-13
Identities = 106/143 (74%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881
||||||||| || |||| || | ||||||||||| || ||||| ||||| ||| ||
Sbjct 21984 AATGCAAATTTTCGTTAAGACTCTTACTGGAAAAACAATAACATTGGAAGTAGAACCATC 22043
Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941
||||| || || || ||| |||||||| ||||| ||||| || || ||||| ||
Sbjct 22044 TGATACAATAGAGAATGTAAAAGGCAAAATACAGGATAAGGAAGGAATTCCACCAGATCA 22103
Query 155942 ACAAAGATTGATTTATGCCGGTA 155964
||| | |||||| ||| ||||
Sbjct 22104 GCAACGTCTGATTTTTGCTGGTA 22126
>seq827
Length=57960
Score = 109 bits (120), Expect = 8e-19
Identities = 113/148 (76%), Gaps = 0/148 (0%)
Strand=Plus/Minus
Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881
||||||||| || |||| || | ||||||||||| || || || ||||| ||| ||
Sbjct 30638 AATGCAAATTTTCGTTAAGACTCTTACTGGAAAAACAATAACTTTGGAAGTAGAACTATC 30579
Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941
||||| || ||| |||||| ||||| ||||||||||| || || || || || ||
Sbjct 30578 TGATACAATAGAAAATGTGAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCGGATCA 30519
Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAG 155969
|||| | ||||||| ||| |||||||||
Sbjct 30518 ACAACGTTTGATTTTTGCTGGTAAGCAG 30491
Score = 109 bits (120), Expect = 8e-19
Identities = 113/148 (76%), Gaps = 0/148 (0%)
Strand=Plus/Minus
Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881
||||||||| || |||| || | ||||||||||| || || || ||||| ||| ||
Sbjct 30920 AATGCAAATTTTCGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATC 30861
Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941
||||| || ||| |||||| ||||| ||||||||||| || || || || || ||
Sbjct 30860 TGATACAATAGAAAATGTGAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCGGATCA 30801
Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAG 155969
|||| | ||||||| ||| |||||||||
Sbjct 30800 ACAACGTTTGATTTTTGCTGGTAAGCAG 30773
Score = 109 bits (120), Expect = 8e-19
Identities = 110/143 (77%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881
||||||||| ||| |||| || | ||||| ||||| || ||||| ||||| ||| ||
Sbjct 55632 AATGCAAATTTTTGTTAAGACCCTCACTGGCAAAACCATCACATTGGAAGTGGAACCATC 55573
Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941
||||| ||| ||| |||||| |||||||| ||||||||||| || || ||||| ||
Sbjct 55572 TGATACAATTGAAAATGTGAAAGGGAAAATACAGGATAAAGAAGGAATTCCACCAGATCA 55513
Query 155942 ACAAAGATTGATTTATGCCGGTA 155964
||| | ||||| | ||| ||||
Sbjct 55512 GCAACGTTTGATATTTGCTGGTA 55490
Score = 104 bits (114), Expect = 3e-17
Identities = 110/145 (76%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881
||||||||| || |||| || | ||||||||||| || || || ||||| ||| ||
Sbjct 30356 AATGCAAATTTTCGTTAAGACTCTTACTGGAAAAACAATAACTTTGGAAGTAGAACTATC 30297
Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941
||||| || ||| |||||| ||||| ||||||||||| || || || || || ||
Sbjct 30296 TGATACAATAGAAAATGTGAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCGGATCA 30237
Query 155942 ACAAAGATTGATTTATGCCGGTAAG 155966
|||| | ||||||| ||| ||||||
Sbjct 30236 ACAACGTTTGATTTTTGCTGGTAAG 30212
Score = 95.1 bits (104), Expect = 2e-14
Identities = 108/145 (74%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||||| |||||| | ||||| ||||| |||||||| |||||| | ||||| || ||
Sbjct 31555 ATGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCATCA 31496
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|||| ||| ||| || |||| || || ||||| ||||||||||| || || || |||
Sbjct 31495 GATACAATTGAAAATGTAAAAAGCAAGATTCAAGACAAAGAAGGCATCCCACCGGATCAA 31436
Query 155943 CAAAGATTGATTTATGCCGGTAAGC 155967
|| | | |||| ||| |||| ||
Sbjct 31435 CAGCGGCTTATTTTTGCTGGTATGC 31411
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 731844838400400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |