Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20nelsoni_20[genbank_20GCA_5F001447455.1_202015-11-24] 2,969 sequences; 47,436,005 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq2465 122 1e-22 seq1187 109 8e-19 seq827 109 8e-19 >seq2465 Length=325902 Score = 122 bits (134), Expect = 1e-22 Identities = 112/142 (79%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | |||||||| ||||||||||| || ||||| ||||| || ||| Sbjct 17342 ATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATCT 17283 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| ||| ||||||| |||||| |||||||| |||||||| || || || || Sbjct 17282 GATACGATTGAAAATGTGAAAAGTAAAATTCAAGATAAGGAAGGCATTCCGCCTGATCAG 17223 Query 155943 CAAAGATTGATTTATGCCGGTA 155964 ||| ||||||| | ||| |||| Sbjct 17222 CAACGATTGATATTTGCTGGTA 17201 Score = 107 bits (118), Expect = 3e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| || ||| | |||||||| ||||||||||| || ||||| || || || ||| Sbjct 17057 AATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAGGTAGAGCCTTC 16998 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | ||| ||| ||||||| ||||| ||||| ||||||||||| || || || || Sbjct 16997 GGACACGATTGAAAATGTGAAAAGCAAAATTCAAGACAAAGAAGGCATTCCACCTGATCA 16938 Query 155942 ACAAAGATTGATTTATGCCGGTAA 155965 || ||||||| | ||| ||||| Sbjct 16937 GCAGCGATTGATATTTGCTGGTAA 16914 Score = 105 bits (116), Expect = 1e-17 Identities = 119/158 (75%), Gaps = 1/158 (1%) Strand=Plus/Minus Query 155808 AATTTATGTAATAAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTA 155867 ||||||| || | ||||| ||||| | || ||| | |||||||||||||| ||| || Sbjct 18034 AATTTATTCAA-ATTATGCAGATATTCGTGAAGACACTTACTGGAAAAACTATAACACTA 17976 Query 155868 GAAGTCGAAGATTCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGC 155927 ||||| ||| || || | || ||| || |||| |||||| || ||||| |||||| Sbjct 17975 GAAGTTGAACCATCAGACACCATCGAAAATGTTAAAAGTAAAATTCAGGATAAGGAAGGC 17916 Query 155928 ATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAA 155965 || ||||| || || |||||||| || | ||| ||||| Sbjct 17915 ATTCCTCCTGATCAGCAAAGATTAATCTTTGCAGGTAA 17878 >seq1187 Length=25466 Score = 109 bits (120), Expect = 8e-19 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| ||| |||| || | ||||| ||||| || ||||| ||||| ||| || Sbjct 20850 AATGCAAATTTTTGTTAAGACCCTCACTGGCAAAACCATCACATTGGAAGTGGAACCATC 20909 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||||| ||| ||| |||||| |||||||| ||||||||||| || || ||||| || Sbjct 20910 TGATACAATTGAAAATGTGAAAGGGAAAATACAGGATAAAGAAGGAATTCCACCAGATCA 20969 Query 155942 ACAAAGATTGATTTATGCCGGTA 155964 ||| | |||||| ||| |||| Sbjct 20970 GCAACGTCTGATTTTTGCTGGTA 20992 Score = 109 bits (120), Expect = 8e-19 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| ||| |||| || | ||||| ||||| || ||||| ||||| ||| || Sbjct 21133 AATGCAAATTTTTGTTAAGACCCTCACTGGCAAAACCATCACATTGGAAGTGGAACCATC 21192 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||||| ||| ||| |||||| |||||||| ||||||||||| || || ||||| || Sbjct 21193 TGATACAATTGAAAATGTGAAAGGGAAAATACAGGATAAAGAAGGAATTCCACCAGATCA 21252 Query 155942 ACAAAGATTGATTTATGCCGGTA 155964 ||| | |||||| ||| |||| Sbjct 21253 GCAACGTCTGATTTTTGCTGGTA 21275 Score = 109 bits (120), Expect = 8e-19 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| ||| |||| || | ||||| ||||| || ||||| ||||| ||| || Sbjct 21416 AATGCAAATTTTTGTTAAGACCCTCACTGGCAAAACCATCACATTGGAAGTGGAACCATC 21475 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||||| ||| ||| |||||| |||||||| ||||||||||| || || ||||| || Sbjct 21476 TGATACAATTGAAAATGTGAAAGGGAAAATACAGGATAAAGAAGGAATTCCACCAGATCA 21535 Query 155942 ACAAAGATTGATTTATGCCGGTA 155964 ||| | |||||| ||| |||| Sbjct 21536 GCAACGTCTGATTTTTGCTGGTA 21558 Score = 109 bits (120), Expect = 8e-19 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| ||| |||| || | ||||| ||||| || ||||| ||||| ||| || Sbjct 22267 AATGCAAATTTTTGTTAAGACCCTCACTGGCAAAACCATCACATTGGAAGTGGAACCATC 22326 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||||| ||| ||| |||||| |||||||| ||||||||||| || || ||||| || Sbjct 22327 TGATACAATTGAAAATGTGAAAGGGAAAATACAGGATAAAGAAGGAATTCCACCAGATCA 22386 Query 155942 ACAAAGATTGATTTATGCCGGTA 155964 ||| | ||||| | ||| |||| Sbjct 22387 GCAACGTTTGATATTTGCTGGTA 22409 Score = 95.1 bits (104), Expect = 2e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| |||||| | ||||| ||||| |||||||| |||||| | ||||| || || Sbjct 20569 ATGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCA 20628 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| ||| || |||| || || ||||| ||||||||||| || || || ||| Sbjct 20629 GATACAATTGAAAATGTAAAAAGCAAGATTCAAGACAAAGAAGGCATCCCACCGGATCAA 20688 Query 155943 CAAAGATTGATTTATGCCGGTAAGC 155967 || | | |||| ||| |||| || Sbjct 20689 CAGCGGCTTATTTTTGCTGGTATGC 20713 Score = 91.5 bits (100), Expect = 2e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| || |||| || | ||||||||||| || ||||| ||||| ||| || Sbjct 21984 AATGCAAATTTTCGTTAAGACTCTTACTGGAAAAACAATAACATTGGAAGTAGAACCATC 22043 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||||| || || || ||| |||||||| ||||| ||||| || || ||||| || Sbjct 22044 TGATACAATAGAGAATGTAAAAGGCAAAATACAGGATAAGGAAGGAATTCCACCAGATCA 22103 Query 155942 ACAAAGATTGATTTATGCCGGTA 155964 ||| | |||||| ||| |||| Sbjct 22104 GCAACGTCTGATTTTTGCTGGTA 22126 >seq827 Length=57960 Score = 109 bits (120), Expect = 8e-19 Identities = 113/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| || |||| || | ||||||||||| || || || ||||| ||| || Sbjct 30638 AATGCAAATTTTCGTTAAGACTCTTACTGGAAAAACAATAACTTTGGAAGTAGAACTATC 30579 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||||| || ||| |||||| ||||| ||||||||||| || || || || || || Sbjct 30578 TGATACAATAGAAAATGTGAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCGGATCA 30519 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAG 155969 |||| | ||||||| ||| ||||||||| Sbjct 30518 ACAACGTTTGATTTTTGCTGGTAAGCAG 30491 Score = 109 bits (120), Expect = 8e-19 Identities = 113/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| || |||| || | ||||||||||| || || || ||||| ||| || Sbjct 30920 AATGCAAATTTTCGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATC 30861 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||||| || ||| |||||| ||||| ||||||||||| || || || || || || Sbjct 30860 TGATACAATAGAAAATGTGAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCGGATCA 30801 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAG 155969 |||| | ||||||| ||| ||||||||| Sbjct 30800 ACAACGTTTGATTTTTGCTGGTAAGCAG 30773 Score = 109 bits (120), Expect = 8e-19 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| ||| |||| || | ||||| ||||| || ||||| ||||| ||| || Sbjct 55632 AATGCAAATTTTTGTTAAGACCCTCACTGGCAAAACCATCACATTGGAAGTGGAACCATC 55573 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||||| ||| ||| |||||| |||||||| ||||||||||| || || ||||| || Sbjct 55572 TGATACAATTGAAAATGTGAAAGGGAAAATACAGGATAAAGAAGGAATTCCACCAGATCA 55513 Query 155942 ACAAAGATTGATTTATGCCGGTA 155964 ||| | ||||| | ||| |||| Sbjct 55512 GCAACGTTTGATATTTGCTGGTA 55490 Score = 104 bits (114), Expect = 3e-17 Identities = 110/145 (76%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| || |||| || | ||||||||||| || || || ||||| ||| || Sbjct 30356 AATGCAAATTTTCGTTAAGACTCTTACTGGAAAAACAATAACTTTGGAAGTAGAACTATC 30297 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||||| || ||| |||||| ||||| ||||||||||| || || || || || || Sbjct 30296 TGATACAATAGAAAATGTGAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCGGATCA 30237 Query 155942 ACAAAGATTGATTTATGCCGGTAAG 155966 |||| | ||||||| ||| |||||| Sbjct 30236 ACAACGTTTGATTTTTGCTGGTAAG 30212 Score = 95.1 bits (104), Expect = 2e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| |||||| | ||||| ||||| |||||||| |||||| | ||||| || || Sbjct 31555 ATGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCATCA 31496 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| ||| || |||| || || ||||| ||||||||||| || || || ||| Sbjct 31495 GATACAATTGAAAATGTAAAAAGCAAGATTCAAGACAAAGAAGGCATCCCACCGGATCAA 31436 Query 155943 CAAAGATTGATTTATGCCGGTAAGC 155967 || | | |||| ||| |||| || Sbjct 31435 CAGCGGCTTATTTTTGCTGGTATGC 31411 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731844838400400