Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20nelsoni_20[genbank_20GCA_5F001447455.1_202015-11-24]
2,969 sequences; 47,436,005 total letters
Query= NC_021248.1
Length=307691
Score E
Sequences producing significant alignments: (Bits) Value
seq827 129 1e-24
seq2465 118 2e-21
seq1187 116 7e-21
seq11 102 2e-16
seq1696 91.5 3e-13
>seq827
Length=57960
Score = 129 bits (142), Expect = 1e-24
Identities = 116/146 (79%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 192394 TTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 192453
||||||||||| || | | ||||||||| ||||| ||||| |||||||| || ||||||
Sbjct 31745 TTACCAGCAAAAATCAGACGCTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 31804
Query 192454 TTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 192513
||| ||||| || || ||| | | ||| ||||| |||||||||||||| |||||
Sbjct 31805 CCTTTCACATTTTCAATTGAGTCTAAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 31864
Query 192514 AATGTTTTAATAAATATCTGCATTTT 192539
| ||||| | |||||||||||||||
Sbjct 31865 AGAGTTTTCACAAATATCTGCATTTT 31890
Score = 113 bits (124), Expect = 9e-20
Identities = 110/142 (77%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 192395 TACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 192454
|||||||||| || | | ||||||||| ||||| || |||||||| ||||| || ||
Sbjct 31414 TACCAGCAAAAATAAGCCGCTGTTGATCCGGTGGGATGCCTTCTTTGTCTTGAATCTTGC 31473
Query 192455 TTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 192514
|||||||||| || | |||||| | || ||||| || ||||| ||||| || || |
Sbjct 31474 TTTTTACATTTTCAATTGTATCTGATGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCA 31533
Query 192515 ATGTTTTAATAAATATCTGCAT 192536
| ||||| | ||||||||||||
Sbjct 31534 ACGTTTTCACAAATATCTGCAT 31555
Score = 107 bits (118), Expect = 4e-18
Identities = 112/147 (76%), Gaps = 0/147 (0%)
Strand=Plus/Plus
Query 192391 TGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATT 192450
|| ||||||||||| || || | |||||||| ||||| ||||| ||||||||||| |||
Sbjct 30774 TGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATT 30833
Query 192451 TTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCA 192510
|| ||| ||||| ||| | ||| || | ||||||||| | ||| || ||||| |||
Sbjct 30834 TTGCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCCA 30893
Query 192511 GTTAATGTTTTAATAAATATCTGCATT 192537
|| | || |||| || || ||||||
Sbjct 30894 GTAAGGGTCTTAACGAAAATTTGCATT 30920
Score = 104 bits (114), Expect = 5e-17
Identities = 111/147 (76%), Gaps = 0/147 (0%)
Strand=Plus/Plus
Query 192391 TGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATT 192450
|| ||||||||||| || || | |||||||| ||||| ||||| ||||||||||| |||
Sbjct 30492 TGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATT 30551
Query 192451 TTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCA 192510
|| ||| ||||| ||| | ||| || ||||||||| | ||| || ||||| |||
Sbjct 30552 TTGCCTTTCACATTTTCTATTGTATCAGATAGTTCTACTTCCAAAGTTATTGTTTTTCCA 30611
Query 192511 GTTAATGTTTTAATAAATATCTGCATT 192537
|| | || |||| || || ||||||
Sbjct 30612 GTAAGAGTCTTAACGAAAATTTGCATT 30638
Score = 102 bits (112), Expect = 2e-16
Identities = 109/144 (76%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 192394 TTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 192453
||||||||||| || || | |||||||| ||||| ||||| ||||||||||| |||||
Sbjct 30213 TTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATTTTG 30272
Query 192454 TTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 192513
||| ||||| ||| | ||| || ||||||||| | ||| || ||||| |||||
Sbjct 30273 CCTTTCACATTTTCTATTGTATCAGATAGTTCTACTTCCAAAGTTATTGTTTTTCCAGTA 30332
Query 192514 AATGTTTTAATAAATATCTGCATT 192537
| || |||| || || ||||||
Sbjct 30333 AGAGTCTTAACGAAAATTTGCATT 30356
Score = 100 bits (110), Expect = 6e-16
Identities = 108/143 (76%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 192395 TACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 192454
|||||||||| || || | || ||||| ||||| |||||||||||||| ||||||||
Sbjct 55490 TACCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCCTGTATTTTCC 55549
Query 192455 TTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 192514
||| ||||| || | ||| || | ||| ||||| | || |||||||| ||||| |
Sbjct 55550 CTTTCACATTTTCAATTGTATCAGATGGTTCCACTTCCAATGTGATGGTTTTGCCAGTGA 55609
Query 192515 ATGTTTTAATAAATATCTGCATT 192537
|| |||| ||| || ||||||
Sbjct 55610 GGGTCTTAACAAAAATTTGCATT 55632
>seq2465
Length=325902
Score = 118 bits (130), Expect = 2e-21
Identities = 112/143 (78%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 192394 TTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 192453
||||| |||||||||||||| || |||||||| || || ||||| ||||| || ||||||
Sbjct 17878 TTACCTGCAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAATTTTA 17937
Query 192454 TTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 192513
|||| ||||| || | ||||| | ||| |||||||| || || ||||| |||||
Sbjct 17938 CTTTTAACATTTTCGATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAGTA 17997
Query 192514 AATGTTTTAATAAATATCTGCAT 192536
| ||| || | |||||||||||
Sbjct 17998 AGTGTCTTCACGAATATCTGCAT 18020
Score = 116 bits (128), Expect = 7e-21
Identities = 112/144 (78%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 192394 TTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 192453
||||||||||| || |||| ||| ||||||||||| || |||||||| ||||| |||||
Sbjct 16914 TTACCAGCAAATATCAATCGCTGCTGATCAGGTGGAATGCCTTCTTTGTCTTGAATTTTG 16973
Query 192454 TTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 192513
|||| ||||| || | || || | ||||| || | || || ||||| ||||||
Sbjct 16974 CTTTTCACATTTTCAATCGTGTCCGAAGGCTCTACCTCCAATGTGATTGTTTTTCCAGTT 17033
Query 192514 AATGTTTTAATAAATATCTGCATT 192537
|||||||| | ||| |||||||||
Sbjct 17034 AATGTTTTCACAAAAATCTGCATT 17057
Score = 116 bits (128), Expect = 7e-21
Identities = 111/142 (78%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 192395 TACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 192454
|||||||||| || |||| || |||||||| || || ||||| |||||||| ||||||
Sbjct 17201 TACCAGCAAATATCAATCGTTGCTGATCAGGCGGAATGCCTTCCTTATCTTGAATTTTAC 17260
Query 192455 TTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 192514
|||| ||||| || | ||| || | |||||||| | || || ||||| |||||||
Sbjct 17261 TTTTCACATTTTCAATCGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTA 17320
Query 192515 ATGTTTTAATAAATATCTGCAT 192536
||||||| | ||| ||||||||
Sbjct 17321 ATGTTTTCACAAAAATCTGCAT 17342
>seq1187
Length=25466
Score = 116 bits (128), Expect = 7e-21
Identities = 111/142 (78%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 192395 TACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 192454
|||||||||| || | | ||||||||| ||||| || |||||||| ||||| || ||
Sbjct 20710 TACCAGCAAAAATAAGCCGCTGTTGATCCGGTGGGATGCCTTCTTTGTCTTGAATCTTGC 20651
Query 192455 TTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 192514
|||||||||| || | |||||||| || ||||| || ||||| ||||| || || |
Sbjct 20650 TTTTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCA 20591
Query 192515 ATGTTTTAATAAATATCTGCAT 192536
| ||||| | ||||||||||||
Sbjct 20590 ACGTTTTCACAAATATCTGCAT 20569
Score = 111 bits (122), Expect = 3e-19
Identities = 112/146 (77%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 192394 TTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 192453
||||||||||| || | | |||||||| ||||| ||||| |||||||| || ||||||
Sbjct 20379 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 20320
Query 192454 TTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 192513
|| ||||| || | ||||| | || ||||| || ||||||||||| |||||
Sbjct 20319 CCCTTCACATTTTCAATGGTGTCTGAGGGCTCCACTTCCAGTGTAATGGTTTTCCCAGTC 20260
Query 192514 AATGTTTTAATAAATATCTGCATTTT 192539
| ||||| | |||||||||||||||
Sbjct 20259 AGAGTTTTGACAAATATCTGCATTTT 20234
Score = 100 bits (110), Expect = 6e-16
Identities = 108/143 (76%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 192395 TACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 192454
|||||||||| || || | || ||||| ||||| |||||||||||||| ||||||||
Sbjct 22409 TACCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCCTGTATTTTCC 22350
Query 192455 TTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 192514
||| ||||| || | ||| || | ||| ||||| | || |||||||| ||||| |
Sbjct 22349 CTTTCACATTTTCAATTGTATCAGATGGTTCCACTTCCAATGTGATGGTTTTGCCAGTGA 22290
Query 192515 ATGTTTTAATAAATATCTGCATT 192537
|| |||| ||| || ||||||
Sbjct 22289 GGGTCTTAACAAAAATTTGCATT 22267
Score = 96.9 bits (106), Expect = 7e-15
Identities = 107/143 (75%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 192395 TACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 192454
|||||||||| || | | || ||||| ||||| |||||||||||||| ||||||||
Sbjct 20992 TACCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCCTGTATTTTCC 20933
Query 192455 TTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 192514
||| ||||| || | ||| || | ||| ||||| | || |||||||| ||||| |
Sbjct 20932 CTTTCACATTTTCAATTGTATCAGATGGTTCCACTTCCAATGTGATGGTTTTGCCAGTGA 20873
Query 192515 ATGTTTTAATAAATATCTGCATT 192537
|| |||| ||| || ||||||
Sbjct 20872 GGGTCTTAACAAAAATTTGCATT 20850
Score = 96.9 bits (106), Expect = 7e-15
Identities = 107/143 (75%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 192395 TACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 192454
|||||||||| || | | || ||||| ||||| |||||||||||||| ||||||||
Sbjct 21275 TACCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCCTGTATTTTCC 21216
Query 192455 TTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 192514
||| ||||| || | ||| || | ||| ||||| | || |||||||| ||||| |
Sbjct 21215 CTTTCACATTTTCAATTGTATCAGATGGTTCCACTTCCAATGTGATGGTTTTGCCAGTGA 21156
Query 192515 ATGTTTTAATAAATATCTGCATT 192537
|| |||| ||| || ||||||
Sbjct 21155 GGGTCTTAACAAAAATTTGCATT 21133
Score = 96.9 bits (106), Expect = 7e-15
Identities = 107/143 (75%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 192395 TACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 192454
|||||||||| || | | || ||||| ||||| |||||||||||||| ||||||||
Sbjct 21558 TACCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCCTGTATTTTCC 21499
Query 192455 TTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 192514
||| ||||| || | ||| || | ||| ||||| | || |||||||| ||||| |
Sbjct 21498 CTTTCACATTTTCAATTGTATCAGATGGTTCCACTTCCAATGTGATGGTTTTGCCAGTGA 21439
Query 192515 ATGTTTTAATAAATATCTGCATT 192537
|| |||| ||| || ||||||
Sbjct 21438 GGGTCTTAACAAAAATTTGCATT 21416
>seq11
Length=460
Score = 102 bits (112), Expect = 2e-16
Identities = 109/144 (76%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 192394 TTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 192453
||||||||||| || || | |||||||| ||||| |||||||| ||||| ||||||||
Sbjct 202 TTACCAGCAAATATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTG 143
Query 192454 TTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 192513
||||||||| ||| | ||| || | ||||||||| | || || ||||| || ||
Sbjct 142 CCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTA 83
Query 192514 AATGTTTTAATAAATATCTGCATT 192537
| || |||| || || ||||||
Sbjct 82 AGAGTCTTAACGAAAATTTGCATT 59
>seq1696
Length=245
Score = 91.5 bits (100), Expect = 3e-13
Identities = 88/113 (78%), Gaps = 0/113 (0%)
Strand=Plus/Minus
Query 192394 TTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 192453
||||||||||| || || | |||||||| ||||| |||||||||||||| ||||||||
Sbjct 113 TTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCTTTATCCTGTATTTTG 54
Query 192454 TTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTT 192506
|||||||| ||| | ||| || | ||||||||| | || || |||||
Sbjct 53 CCCTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTT 1
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 984442550073150
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |