Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20nelsoni_20[genbank_20GCA_5F001447455.1_202015-11-24] 2,969 sequences; 47,436,005 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq827 120 5e-22 seq2465 118 2e-21 seq1187 116 7e-21 seq11 107 3e-18 seq1696 96.9 6e-15 >seq827 Length=57960 Score = 120 bits (132), Expect = 5e-22 Identities = 114/146 (78%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 171927 TTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 171986 |||||||||||||| | | |||||| || ||||| ||||| |||||||| || |||||| Sbjct 31745 TTACCAGCAAAAATCAGACGCTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 31804 Query 171987 TTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 172046 ||| ||||| || | ||| | | ||| ||||| |||||||||||||| ||||| Sbjct 31805 CCTTTCACATTTTCAATTGAGTCTAAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 31864 Query 172047 AATGTTTTAATGAATATCTGCATTTT 172072 | ||||| | |||||||||||||| Sbjct 31865 AGAGTTTTCACAAATATCTGCATTTT 31890 Score = 116 bits (128), Expect = 7e-21 Identities = 114/147 (78%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 171924 TGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATT 171983 || |||||||||||||| || | ||||| || ||||| ||||| ||||||||||| ||| Sbjct 30774 TGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATT 30833 Query 171984 TTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCA 172043 || ||| ||||| ||| ||||| || | ||||||||| | ||| || ||||| ||| Sbjct 30834 TTGCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCCA 30893 Query 172044 GTTAATGTTTTAATGAATATCTGCATT 172070 || | || |||| ||| || |||||| Sbjct 30894 GTAAGGGTCTTAACGAAAATTTGCATT 30920 Score = 113 bits (124), Expect = 8e-20 Identities = 113/147 (77%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 171924 TGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATT 171983 || |||||||||||||| || | ||||| || ||||| ||||| ||||||||||| ||| Sbjct 30492 TGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATT 30551 Query 171984 TTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCA 172043 || ||| ||||| ||| ||||| || ||||||||| | ||| || ||||| ||| Sbjct 30552 TTGCCTTTCACATTTTCTATTGTATCAGATAGTTCTACTTCCAAAGTTATTGTTTTTCCA 30611 Query 172044 GTTAATGTTTTAATGAATATCTGCATT 172070 || | || |||| ||| || |||||| Sbjct 30612 GTAAGAGTCTTAACGAAAATTTGCATT 30638 Score = 113 bits (124), Expect = 8e-20 Identities = 110/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987 ||||||||||||| | | |||||| || ||||| || |||||||| ||||| || || Sbjct 31414 TACCAGCAAAAATAAGCCGCTGTTGATCCGGTGGGATGCCTTCTTTGTCTTGAATCTTGC 31473 Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047 |||||||||| || |||||||| | || ||||| || ||||| ||||| || || | Sbjct 31474 TTTTTACATTTTCAATTGTATCTGATGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCA 31533 Query 172048 ATGTTTTAATGAATATCTGCAT 172069 | ||||| | ||||||||||| Sbjct 31534 ACGTTTTCACAAATATCTGCAT 31555 Score = 111 bits (122), Expect = 3e-19 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 171927 TTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 171986 |||||||||||||| || | ||||| || ||||| ||||| ||||||||||| ||||| Sbjct 30213 TTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATTTTG 30272 Query 171987 TTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 172046 ||| ||||| ||| ||||| || ||||||||| | ||| || ||||| ||||| Sbjct 30273 CCTTTCACATTTTCTATTGTATCAGATAGTTCTACTTCCAAAGTTATTGTTTTTCCAGTA 30332 Query 172047 AATGTTTTAATGAATATCTGCATT 172070 | || |||| ||| || |||||| Sbjct 30333 AGAGTCTTAACGAAAATTTGCATT 30356 Score = 96.9 bits (106), Expect = 6e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987 |||||||||| || || | || || || ||||| |||||||||||||| |||||||| Sbjct 55490 TACCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCCTGTATTTTCC 55549 Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047 ||| ||||| || ||||| || | ||| ||||| | || |||||||| ||||| | Sbjct 55550 CTTTCACATTTTCAATTGTATCAGATGGTTCCACTTCCAATGTGATGGTTTTGCCAGTGA 55609 Query 172048 ATGTTTTAATGAATATCTGCATT 172070 || |||| || || |||||| Sbjct 55610 GGGTCTTAACAAAAATTTGCATT 55632 Score = 87.8 bits (96), Expect = 3e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987 ||||||||||||| | | |||||| || || || ||||| || |||||||| || || Sbjct 29627 TACCAGCAAAAATCAGACGCTGTTGATCTGGAGGAATTCCCTCCTTATCTTGAATCTTCC 29686 Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047 ||| ||||| | |||||| || | ||| ||||| | || ||||| || ||||||| Sbjct 29687 CTTTCACATTCTCAACAGTATCAGATGGTTCCACTTCCAACGTGATGGTCTTCCCAGTTA 29746 Query 172048 ATGTTTTAATGAATATCTGCATT 172070 || |||| || || |||||| Sbjct 29747 GGGTCTTAACAAAAATTTGCATT 29769 >seq2465 Length=325902 Score = 118 bits (130), Expect = 2e-21 Identities = 112/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 171927 TTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 171986 ||||| ||||| |||||||| || || ||||| || || ||||| ||||| || |||||| Sbjct 17878 TTACCTGCAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAATTTTA 17937 Query 171987 TTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 172046 |||| ||||| || || ||||| | ||| |||||||| || || ||||| ||||| Sbjct 17938 CTTTTAACATTTTCGATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAGTA 17997 Query 172047 AATGTTTTAATGAATATCTGCAT 172069 | ||| || | |||||||||||| Sbjct 17998 AGTGTCTTCACGAATATCTGCAT 18020 Score = 113 bits (124), Expect = 8e-20 Identities = 110/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987 |||||||||| || |||| || || ||||| || || ||||| |||||||| |||||| Sbjct 17201 TACCAGCAAATATCAATCGTTGCTGATCAGGCGGAATGCCTTCCTTATCTTGAATTTTAC 17260 Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047 |||| ||||| || ||||| || | |||||||| | || || ||||| ||||||| Sbjct 17261 TTTTCACATTTTCAATCGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTA 17320 Query 172048 ATGTTTTAATGAATATCTGCAT 172069 ||||||| | || |||||||| Sbjct 17321 ATGTTTTCACAAAAATCTGCAT 17342 Score = 111 bits (122), Expect = 3e-19 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 171927 TTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 171986 ||||||||||| || |||| ||| || |||||||| || |||||||| ||||| ||||| Sbjct 16914 TTACCAGCAAATATCAATCGCTGCTGATCAGGTGGAATGCCTTCTTTGTCTTGAATTTTG 16973 Query 171987 TTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 172046 |||| ||||| || || || || | ||||| || | || || ||||| |||||| Sbjct 16974 CTTTTCACATTTTCAATCGTGTCCGAAGGCTCTACCTCCAATGTGATTGTTTTTCCAGTT 17033 Query 172047 AATGTTTTAATGAATATCTGCATT 172070 |||||||| | || ||||||||| Sbjct 17034 AATGTTTTCACAAAAATCTGCATT 17057 >seq1187 Length=25466 Score = 116 bits (128), Expect = 7e-21 Identities = 111/142 (78%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987 ||||||||||||| | | |||||| || ||||| || |||||||| ||||| || || Sbjct 20710 TACCAGCAAAAATAAGCCGCTGTTGATCCGGTGGGATGCCTTCTTTGTCTTGAATCTTGC 20651 Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047 |||||||||| || |||||||||| || ||||| || ||||| ||||| || || | Sbjct 20650 TTTTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCA 20591 Query 172048 ATGTTTTAATGAATATCTGCAT 172069 | ||||| | ||||||||||| Sbjct 20590 ACGTTTTCACAAATATCTGCAT 20569 Score = 111 bits (122), Expect = 3e-19 Identities = 112/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 171927 TTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 171986 |||||||||||||| | | ||||| || ||||| ||||| |||||||| || |||||| Sbjct 20379 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 20320 Query 171987 TTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 172046 || ||||| || || ||||| | || ||||| || ||||||||||| ||||| Sbjct 20319 CCCTTCACATTTTCAATGGTGTCTGAGGGCTCCACTTCCAGTGTAATGGTTTTCCCAGTC 20260 Query 172047 AATGTTTTAATGAATATCTGCATTTT 172072 | ||||| | |||||||||||||| Sbjct 20259 AGAGTTTTGACAAATATCTGCATTTT 20234 Score = 105 bits (116), Expect = 1e-17 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987 ||||||||||||| | | || || || ||||| |||||||| ||||| |||||||| Sbjct 22126 TACCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCCTTATCCTGTATTTTGC 22067 Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047 ||||||||| ||| ||||| || | ||||||||| | || || ||||| ||||| | Sbjct 22066 CTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAATGTTATTGTTTTTCCAGTAA 22007 Query 172048 ATGTTTTAATGAATATCTGCATT 172070 || |||| ||| || |||||| Sbjct 22006 GAGTCTTAACGAAAATTTGCATT 21984 Score = 100 bits (110), Expect = 5e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987 ||||||||||||| || | ||||| || ||||| |||||||| ||||| |||||||| Sbjct 21841 TACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTCC 21782 Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047 ||| ||||| || ||||| || | ||| ||||| | || |||||||| ||||| | Sbjct 21781 CTTTCACATTTTCAATTGTATCAGATGGTTCCACTTCCAATGTGATGGTTTTGCCAGTGA 21722 Query 172048 ATGTTTTAATGAATATCTGCATT 172070 || |||| || || |||||| Sbjct 21721 GGGTCTTAACAAAAATTTGCATT 21699 Score = 96.9 bits (106), Expect = 6e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987 ||||||||||||| | | || || || ||||| |||||||||||||| |||||||| Sbjct 20992 TACCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCCTGTATTTTCC 20933 Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047 ||| ||||| || ||||| || | ||| ||||| | || |||||||| ||||| | Sbjct 20932 CTTTCACATTTTCAATTGTATCAGATGGTTCCACTTCCAATGTGATGGTTTTGCCAGTGA 20873 Query 172048 ATGTTTTAATGAATATCTGCATT 172070 || |||| || || |||||| Sbjct 20872 GGGTCTTAACAAAAATTTGCATT 20850 Score = 96.9 bits (106), Expect = 6e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987 ||||||||||||| | | || || || ||||| |||||||||||||| |||||||| Sbjct 21275 TACCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCCTGTATTTTCC 21216 Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047 ||| ||||| || ||||| || | ||| ||||| | || |||||||| ||||| | Sbjct 21215 CTTTCACATTTTCAATTGTATCAGATGGTTCCACTTCCAATGTGATGGTTTTGCCAGTGA 21156 Query 172048 ATGTTTTAATGAATATCTGCATT 172070 || |||| || || |||||| Sbjct 21155 GGGTCTTAACAAAAATTTGCATT 21133 Score = 96.9 bits (106), Expect = 6e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987 ||||||||||||| | | || || || ||||| |||||||||||||| |||||||| Sbjct 21558 TACCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCCTGTATTTTCC 21499 Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047 ||| ||||| || ||||| || | ||| ||||| | || |||||||| ||||| | Sbjct 21498 CTTTCACATTTTCAATTGTATCAGATGGTTCCACTTCCAATGTGATGGTTTTGCCAGTGA 21439 Query 172048 ATGTTTTAATGAATATCTGCATT 172070 || |||| || || |||||| Sbjct 21438 GGGTCTTAACAAAAATTTGCATT 21416 Score = 96.9 bits (106), Expect = 6e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987 |||||||||| || || | || || || ||||| |||||||||||||| |||||||| Sbjct 22409 TACCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCCTGTATTTTCC 22350 Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047 ||| ||||| || ||||| || | ||| ||||| | || |||||||| ||||| | Sbjct 22349 CTTTCACATTTTCAATTGTATCAGATGGTTCCACTTCCAATGTGATGGTTTTGCCAGTGA 22290 Query 172048 ATGTTTTAATGAATATCTGCATT 172070 || |||| || || |||||| Sbjct 22289 GGGTCTTAACAAAAATTTGCATT 22267 >seq11 Length=460 Score = 107 bits (118), Expect = 3e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 171927 TTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 171986 ||||||||||| || || | ||||| || ||||| |||||||| ||||| |||||||| Sbjct 202 TTACCAGCAAATATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTG 143 Query 171987 TTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 172046 ||||||||| ||| ||||| || | ||||||||| | || || ||||| || || Sbjct 142 CCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTA 83 Query 172047 AATGTTTTAATGAATATCTGCATT 172070 | || |||| ||| || |||||| Sbjct 82 AGAGTCTTAACGAAAATTTGCATT 59 >seq1696 Length=245 Score = 96.9 bits (106), Expect = 6e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 171927 TTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 171986 |||||||||||||| || | ||||| || ||||| |||||||||||||| |||||||| Sbjct 113 TTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCTTTATCCTGTATTTTG 54 Query 171987 TTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTT 172039 |||||||| ||| ||||| || | ||||||||| | || || ||||| Sbjct 53 CCCTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905102408140200