Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20nelsoni_20[genbank_20GCA_5F001447455.1_202015-11-24] 2,969 sequences; 47,436,005 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq2680 102 7e-17 seq827 100 3e-16 seq1187 96.9 3e-15 seq11 96.9 3e-15 seq2810 91.5 1e-13 seq378 91.5 1e-13 seq2465 82.4 7e-11 >seq2680 Length=639 Score = 102 bits (112), Expect = 7e-17 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 ||||| || ||||| || ||||| || || || ||||| ||| ||||||||||||| || Sbjct 6 AAGATTCAGGACAAGGAGGGAATCCCCCCGGACCAACAGCGTCTGATCTTTGCCGGAAAG 65 Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACAC 24907 ||||| |||||| | | | || ||||||| ||||| || |||||||| || || || Sbjct 66 CAGCTTGAGGATGGCCGCACCCTGGCAGATTACAACATCCAGAAGGAATCCACCCTTCAT 125 Query 24908 TTGGTG 24913 |||||| Sbjct 126 TTGGTG 131 Score = 86.0 bits (94), Expect = 6e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || | ||||| || || || || | || || || | | Sbjct 150 ATGCAGATCTTTGTCAAGACCTTGACCGGAAAGACCATCACCTTGGAGGTGGAGAGCTCA 209 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || || ||||| ||||| || || || || || || || Sbjct 210 GACACCATCGATAATGTGAAGGCTAAAATCCAGGACAAGGAGGGTATCCCACCAGACCAG 269 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | | ||||||||||| || ||||| |||||| | | | || |||| || ||| Sbjct 270 CAGAGGCTTATCTTTGCCGGAAAGCAGCTTGAGGATGGCCGTACCCTGGCAGACTACAAC 329 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTG 24913 || || |||||||| || || || |||||| Sbjct 330 ATCCAGAAGGAATCCACCCTTCATTTGGTG 359 >seq827 Length=57960 Score = 100 bits (110), Expect = 3e-16 Identities = 109/142 (77%), Gaps = 2/142 (1%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| ||| | |||||| | || || ||||| ||||| || ||||| || |||| Sbjct 31556 GATGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGA-GCCAT 31498 Query 24763 C-GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATC 24821 | || ||| | |||| |||||| ||||| |||||||||||||| || || || |||| Sbjct 31497 CAGATACAATTGAAAATGTAAAAAGCAAGATTCAAGACAAAGAAGGCATCCCACCGGATC 31438 Query 24822 AACAACGTTTGATCTTTGCCGG 24843 |||| || | || ||||| || Sbjct 31437 AACAGCGGCTTATTTTTGCTGG 31416 Score = 98.7 bits (108), Expect = 9e-16 Identities = 110/147 (75%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || |||| || || || || ||||| || || | ||||||||| | | Sbjct 30919 ATGCAAATTTTCGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATCT 30860 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || ||| |||||| || ||| || || ||||| ||||| ||||| || || |||||| Sbjct 30859 GATACAATAGAAAATGTGAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCGGATCAA 30800 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAG 24850 ||||||||||| ||||| || || ||| Sbjct 30799 CAACGTTTGATTTTTGCTGGTAAGCAG 30773 Score = 96.9 bits (106), Expect = 3e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | ||||| || || || ||||| ||||| || ||||| ||| || Sbjct 31887 ATGCAGATATTTGTGAAAACTCTGACTGGGAAAACCATTACTCTGGAAGTGGAACCCTTA 31828 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| || | |||| || ||| || || || || ||||| ||||| || ||||||||| Sbjct 31827 GACTCAATTGAAAATGTGAAAGGTAAAATTCAGGATAAAGAGGGAATTCCACCCGATCAA 31768 Query 24824 CAACGTTTGATCTTTGCCGGGAA 24846 || ||| |||| ||||| || || Sbjct 31767 CAGCGTCTGATTTTTGCTGGTAA 31745 Score = 95.1 bits (104), Expect = 1e-14 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || |||| || || || || ||||| || || | ||||||||| | Sbjct 30637 ATGCAAATTTTCGTTAAGACTCTTACTGGAAAAACAATAACTTTGGAAGTAGAACTATCT 30578 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || ||| |||||| || ||| || || ||||| ||||| ||||| || || |||||| Sbjct 30577 GATACAATAGAAAATGTGAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCGGATCAA 30518 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAG 24850 ||||||||||| ||||| || || ||| Sbjct 30517 CAACGTTTGATTTTTGCTGGTAAGCAG 30491 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || |||| || || || || ||||| || || | ||||||||| | Sbjct 30355 ATGCAAATTTTCGTTAAGACTCTTACTGGAAAAACAATAACTTTGGAAGTAGAACTATCT 30296 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || ||| |||||| || ||| || || ||||| ||||| ||||| || || |||||| Sbjct 30295 GATACAATAGAAAATGTGAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCGGATCAA 30236 Query 24824 CAACGTTTGATCTTTGCCGGGAA 24846 ||||||||||| ||||| || || Sbjct 30235 CAACGTTTGATTTTTGCTGGTAA 30213 Score = 86.0 bits (94), Expect = 6e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| |||| || || || || ||||| || || | ||||| ||| | | Sbjct 55631 ATGCAAATTTTTGTTAAGACCCTCACTGGCAAAACCATCACATTGGAAGTGGAACCATCT 55572 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || ||| | |||| || ||| || || || || ||||||||||| || || ||||| Sbjct 55571 GATACAATTGAAAATGTGAAAGGGAAAATACAGGATAAAGAAGGAATTCCACCAGATCAG 55512 Query 24824 CAACGTTTGATCTTTGCCGG 24843 ||||||||||| ||||| || Sbjct 55511 CAACGTTTGATATTTGCTGG 55492 >seq1187 Length=25466 Score = 96.9 bits (106), Expect = 3e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | ||||| || || || ||||| ||||| || ||||| || || | Sbjct 20237 ATGCAGATATTTGTCAAAACTCTGACTGGGAAAACCATTACACTGGAAGTGGAGCCCTCA 20296 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || || || || || || ||||| ||||| || ||||||||| Sbjct 20297 GACACCATTGAAAATGTGAAGGGTAAAATTCAGGATAAAGAGGGAATTCCACCCGATCAA 20356 Query 24824 CAACGTTTGATCTTTGCCGGGAA 24846 |||||| |||| ||||| || || Sbjct 20357 CAACGTCTGATTTTTGCTGGTAA 20379 Score = 96.9 bits (106), Expect = 3e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| ||| | |||||| | || || ||||| ||||| || ||||| || | | Sbjct 20568 GATGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTC 20627 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || ||| | |||| |||||| ||||| |||||||||||||| || || || ||||| Sbjct 20628 AGATACAATTGAAAATGTAAAAAGCAAGATTCAAGACAAAGAAGGCATCCCACCGGATCA 20687 Query 24823 ACAACGTTTGATCTTTGCCGG 24843 ||| || | || ||||| || Sbjct 20688 ACAGCGGCTTATTTTTGCTGG 20708 Score = 86.0 bits (94), Expect = 6e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| |||| || || || || ||||| || || | ||||| ||| | | Sbjct 21700 ATGCAAATTTTTGTTAAGACCCTCACTGGCAAAACCATCACATTGGAAGTGGAACCATCT 21759 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || ||| | |||| || ||| || || || || || |||||||| || || |||||| Sbjct 21760 GATACAATTGAAAATGTGAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCAA 21819 Query 24824 CAACGTTTGATCTTTGCCGG 24843 ||||||||||| ||||| || Sbjct 21820 CAACGTTTGATTTTTGCTGG 21839 Score = 86.0 bits (94), Expect = 6e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| |||| || || || || ||||| || || | ||||| ||| | | Sbjct 22268 ATGCAAATTTTTGTTAAGACCCTCACTGGCAAAACCATCACATTGGAAGTGGAACCATCT 22327 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || ||| | |||| || ||| || || || || ||||||||||| || || ||||| Sbjct 22328 GATACAATTGAAAATGTGAAAGGGAAAATACAGGATAAAGAAGGAATTCCACCAGATCAG 22387 Query 24824 CAACGTTTGATCTTTGCCGG 24843 ||||||||||| ||||| || Sbjct 22388 CAACGTTTGATATTTGCTGG 22407 Score = 82.4 bits (90), Expect = 7e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| |||| || || || || ||||| || || | ||||| ||| | | Sbjct 20851 ATGCAAATTTTTGTTAAGACCCTCACTGGCAAAACCATCACATTGGAAGTGGAACCATCT 20910 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || ||| | |||| || ||| || || || || ||||||||||| || || ||||| Sbjct 20911 GATACAATTGAAAATGTGAAAGGGAAAATACAGGATAAAGAAGGAATTCCACCAGATCAG 20970 Query 24824 CAACGTTTGATCTTTGCCGG 24843 |||||| |||| ||||| || Sbjct 20971 CAACGTCTGATTTTTGCTGG 20990 Score = 82.4 bits (90), Expect = 7e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| |||| || || || || ||||| || || | ||||| ||| | | Sbjct 21134 ATGCAAATTTTTGTTAAGACCCTCACTGGCAAAACCATCACATTGGAAGTGGAACCATCT 21193 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || ||| | |||| || ||| || || || || ||||||||||| || || ||||| Sbjct 21194 GATACAATTGAAAATGTGAAAGGGAAAATACAGGATAAAGAAGGAATTCCACCAGATCAG 21253 Query 24824 CAACGTTTGATCTTTGCCGG 24843 |||||| |||| ||||| || Sbjct 21254 CAACGTCTGATTTTTGCTGG 21273 Score = 82.4 bits (90), Expect = 7e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| |||| || || || || ||||| || || | ||||| ||| | | Sbjct 21417 ATGCAAATTTTTGTTAAGACCCTCACTGGCAAAACCATCACATTGGAAGTGGAACCATCT 21476 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || ||| | |||| || ||| || || || || ||||||||||| || || ||||| Sbjct 21477 GATACAATTGAAAATGTGAAAGGGAAAATACAGGATAAAGAAGGAATTCCACCAGATCAG 21536 Query 24824 CAACGTTTGATCTTTGCCGG 24843 |||||| |||| ||||| || Sbjct 21537 CAACGTCTGATTTTTGCTGG 21556 >seq11 Length=460 Score = 96.9 bits (106), Expect = 3e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || |||| || || ||||| ||||| || || | ||||||||| | | Sbjct 60 ATGCAAATTTTCGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATCT 119 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || ||| |||| | |||||| || || || || || |||||||| || || |||||| Sbjct 120 GATACAATAGAGAATGTAAAAGGCAAAATACAGGATAAGGAAGGAATTCCACCGGATCAA 179 Query 24824 CAACGTTTGATCTTTGCCGGGAA 24846 ||||||||||| ||||| || || Sbjct 180 CAACGTTTGATATTTGCTGGTAA 202 >seq2810 Length=199988 Score = 91.5 bits (100), Expect = 1e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 139123 TATTCGACAATTTCGGCACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGATTG 139182 |||| |||||||| | |||| || ||| || || ||||| | |||||| ||||| Sbjct 183227 TATTGAACAATTTCTGTGCACAGGTTTGAACATTTTATAGTACCCAGATTTTGCTGATTC 183286 Query 139183 CTTTTTCGGTTACAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTGTGTC 139242 ||||| || || ||||||||||| | |||| |||||||||||||||| | ||| | | Sbjct 183287 GATTTTCTATTGCACGCATCTTTGTAGACCATAAACGGTGTGCCAGTTTCAATTTGAGAC 183346 Query 139243 TCTATAAT 139250 || ||||| Sbjct 183347 TCAATAAT 183354 >seq378 Length=398 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || |||| || || ||||| ||||| || || | ||||||||| | | Sbjct 115 ATGCAAATTTTCGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATCT 174 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || ||| |||| | |||||| || || || || || |||||||| || || ||||| Sbjct 175 GATACAATAGAGAATGTAAAAGGCAAAATACAGGATAAGGAAGGAATTCCACCAGATCAG 234 Query 24824 CAACGTTTGATCTTTGCCGG 24843 ||||||||||| ||||| || Sbjct 235 CAACGTTTGATATTTGCTGG 254 >seq2465 Length=325902 Score = 82.4 bits (90), Expect = 7e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | ||||| |||| || ||||| || || | || ||||| | | Sbjct 17056 ATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAGGTAGAGCCTTCG 16997 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || ||| || || |||||||||||||| || || || ||||| Sbjct 16996 GACACGATTGAAAATGTGAAAAGCAAAATTCAAGACAAAGAAGGCATTCCACCTGATCAG 16937 Query 24824 CAACGTTTGATCTTTGCCGGGAA 24846 || || ||||| ||||| || || Sbjct 16936 CAGCGATTGATATTTGCTGGTAA 16914 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449880903175320