Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20nelsoni_20[genbank_20GCA_5F001447455.1_202015-11-24]
2,969 sequences; 47,436,005 total letters
Query= NC_022646.1
Length=101818
Score E
Sequences producing significant alignments: (Bits) Value
seq2680 118 7e-22
>seq2680
Length=639
Score = 118 bits (130), Expect = 7e-22
Identities = 157/216 (73%), Gaps = 8/216 (4%)
Strand=Plus/Minus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
|| |||| |||| |||| |||||||| ||||| ||||| | ||| | || ||||
Sbjct 361 AGCACCAAATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCTGCCAGGGTACGGCCATCC 302
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|| || ||||||||||| ||||| || | ||||||||| | || | |||||||||||
Sbjct 301 TCAAGCTGCTTTCCGGCAAAGATAAGCCTCTGCTGGTCTGGTGGGATACCCTCCTTGTCC 242
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941
| ||||| || || || ||||||| || | ||| || || | ||| ||
Sbjct 241 TGGATTTTAGCCTTCAC--AT--TATCGATGGTGTCTGAGCTCTCCACCTCCAAGGTGAT 186
Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
||||||||| || | |||||| ||||||||||||||
Sbjct 185 GGTCTTTCCGGTCAAGGTCTTGACAAAGATCTGCAT 150
Score = 113 bits (124), Expect = 3e-20
Identities = 152/212 (72%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
||||| ||||||| ||| ||||||||| || || ||||| | ||| | ||| ||||
Sbjct 589 AGGACAAGGTGAAGGGTAGACTCCTTCTGGATATTGTAGTCTGCCAGGGTACGCCCATCC 530
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|| || ||||| ||||| ||||| || | ||||||||| | || | ||||||||||||
Sbjct 529 TCGAGCTGCTTGCCGGCAAAGATAAGCCTCTGCTGGTCTGGTGGAATCCCCTCCTTGTCT 470
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945
| || || || || | || | || | ||| || |||| ||| ||||||
Sbjct 469 TGAATCTTGGCCTTCACATTGTCAATGGTGTCTGAGCTCTCCACCTCAAGGGTGATGGTC 410
Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
|| || || || ||||| ||||| ||||||||
Sbjct 409 TTCCCTGTAAGAGTCTTGACAAAAATCTGCAT 378
Score = 84.2 bits (92), Expect = 1e-11
Identities = 90/119 (76%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
|| |||| |||| |||| |||||||| ||||| || || | ||| |||| ||||
Sbjct 133 AGCACCAAATGAAGGGTGGATTCCTTCTGGATGTTGTAATCTGCCAGGGTGCGGCCATCC 74
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884
|| || ||||||||||| |||||||| || || ||||| | || | |||||||||||
Sbjct 73 TCAAGCTGCTTTCCGGCAAAGATCAGACGCTGTTGGTCCGGGGGGATTCCCTCCTTGTC 15
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 325681014907811
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |