Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20nelsoni_20[genbank_20GCA_5F001447455.1_202015-11-24]
2,969 sequences; 47,436,005 total letters
Query= NC_023426.1
Length=245717
Score E
Sequences producing significant alignments: (Bits) Value
seq827 109 9e-19
seq2465 105 1e-17
seq1187 105 1e-17
>seq827
Length=57960
Score = 109 bits (120), Expect = 9e-19
Identities = 111/142 (78%), Gaps = 2/142 (1%)
Strand=Plus/Minus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAAC-ATAAC 146090
|||| ||||| | ||||| || ||||||||||| ||||| |||| || || | || |
Sbjct 31554 TGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCATCA- 31496
Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150
||||| ||| |||||||||||| || || ||| ||||||||||| ||||| ||||||
Sbjct 31495 GATACAATTGAAAATGTAAAAAGCAAGATTCAAGACAAAGAAGGCATCCCACCGGATCAA 31436
Query 146151 CAAAGACTCATTTTTGCAGGTA 146172
|| | || |||||||| ||||
Sbjct 31435 CAGCGGCTTATTTTTGCTGGTA 31414
Score = 104 bits (114), Expect = 4e-17
Identities = 112/146 (77%), Gaps = 2/146 (1%)
Strand=Plus/Minus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAAC- 146090
||||||| ||| | || || | || ||||||||||| ||| | || ||||||| || |
Sbjct 30636 TGCAAATTTTCGTTAAGACTCTTACTGGAAAAACAATAACTTTGGAAGTAGAAC-TATCT 30578
Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150
||||| || ||||||| ||| ||||| ||| |||||| || |||||||| ||||||
Sbjct 30577 GATACAATAGAAAATGTGAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCGGATCAA 30518
Query 146151 CAAAGACTCATTTTTGCAGGTAAACA 146176
||| | | |||||||| ||||| ||
Sbjct 30517 CAACGTTTGATTTTTGCTGGTAAGCA 30492
Score = 102 bits (112), Expect = 1e-16
Identities = 110/143 (77%), Gaps = 2/143 (1%)
Strand=Plus/Minus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAAC- 146090
||||||| ||| | || || | || ||||||||||| ||| | || ||||||| || |
Sbjct 30354 TGCAAATTTTCGTTAAGACTCTTACTGGAAAAACAATAACTTTGGAAGTAGAAC-TATCT 30296
Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150
||||| || ||||||| ||| ||||| ||| |||||| || |||||||| ||||||
Sbjct 30295 GATACAATAGAAAATGTGAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCGGATCAA 30236
Query 146151 CAAAGACTCATTTTTGCAGGTAA 146173
||| | | |||||||| |||||
Sbjct 30235 CAACGTTTGATTTTTGCTGGTAA 30213
Score = 100 bits (110), Expect = 4e-16
Identities = 109/145 (75%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
||||||| ||| | || || | || ||||||||||| ||| | || ||||||| |
Sbjct 30918 TGCAAATTTTCGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATCTG 30859
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
|||| || ||||||| ||| ||||| ||| |||||| || |||||||| |||||||
Sbjct 30858 ATACAATAGAAAATGTGAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCGGATCAAC 30799
Query 146152 AAAGACTCATTTTTGCAGGTAAACA 146176
|| | | |||||||| ||||| ||
Sbjct 30798 AACGTTTGATTTTTGCTGGTAAGCA 30774
Score = 89.7 bits (98), Expect = 8e-13
Identities = 105/142 (74%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
|||| ||||| | ||||| | || || ||||| |||||| | || || |||| |
Sbjct 31886 TGCAGATATTTGTGAAAACTCTGACTGGGAAAACCATTACTCTGGAAGTGGAACCCTTAG 31827
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
| | ||| ||||||| ||| |||||| || |||||| || ||||||||||||||||
Sbjct 31826 ACTCAATTGAAAATGTGAAAGGTAAAATTCAGGATAAAGAGGGAATTCCACCCGATCAAC 31767
Query 146152 AAAGACTCATTTTTGCAGGTAA 146173
| | || |||||||| |||||
Sbjct 31766 AGCGTCTGATTTTTGCTGGTAA 31745
>seq2465
Length=325902
Score = 105 bits (116), Expect = 1e-17
Identities = 108/141 (77%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
|||| || || | ||||||||||| ||||||||||| || | || ||||| | |
Sbjct 17341 TGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATCTG 17282
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
|||| ||| ||||||| |||| |||||| ||| ||| ||||||||||| || ||||| |
Sbjct 17281 ATACGATTGAAAATGTGAAAAGTAAAATTCAAGATAAGGAAGGCATTCCGCCTGATCAGC 17222
Query 146152 AAAGACTCATTTTTGCAGGTA 146172
|| || | || ||||| ||||
Sbjct 17221 AACGATTGATATTTGCTGGTA 17201
Score = 104 bits (114), Expect = 4e-17
Identities = 108/142 (76%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
|||| || || | ||||||||||| ||||||||||| || | || ||||| | | |
Sbjct 17055 TGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAGGTAGAGCCTTCGG 16996
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
| || ||| ||||||| |||| ||||| ||| ||||||||||||||||| ||||| |
Sbjct 16995 ACACGATTGAAAATGTGAAAAGCAAAATTCAAGACAAAGAAGGCATTCCACCTGATCAGC 16936
Query 146152 AAAGACTCATTTTTGCAGGTAA 146173
| || | || ||||| |||||
Sbjct 16935 AGCGATTGATATTTGCTGGTAA 16914
Score = 98.7 bits (108), Expect = 2e-15
Identities = 109/143 (76%), Gaps = 2/143 (1%)
Strand=Plus/Minus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAAC-ATAAC 146090
|||| |||||| | || ||| | || |||||||| || || | || || |||| || |
Sbjct 18019 TGCAGATATTCGTGAAGACACTTACTGGAAAAACTATAACACTAGAAGTTGAACCATCA- 17961
Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150
|| || || ||||||| |||| |||||| || ||| ||||||||||| || |||||
Sbjct 17960 GACACCATCGAAAATGTTAAAAGTAAAATTCAGGATAAGGAAGGCATTCCTCCTGATCAG 17901
Query 146151 CAAAGACTCATTTTTGCAGGTAA 146173
|||||| | || |||||||||||
Sbjct 17900 CAAAGATTAATCTTTGCAGGTAA 17878
>seq1187
Length=25466
Score = 105 bits (116), Expect = 1e-17
Identities = 108/141 (77%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
|||| ||||| | ||||| || ||||||||||| ||||| |||| || || | |
Sbjct 20570 TGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCAG 20629
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
|||| ||| |||||||||||| || || ||| ||||||||||| ||||| |||||||
Sbjct 20630 ATACAATTGAAAATGTAAAAAGCAAGATTCAAGACAAAGAAGGCATCCCACCGGATCAAC 20689
Query 146152 AAAGACTCATTTTTGCAGGTA 146172
| | || |||||||| ||||
Sbjct 20690 AGCGGCTTATTTTTGCTGGTA 20710
Score = 95.1 bits (104), Expect = 2e-14
Identities = 112/152 (74%), Gaps = 0/152 (0%)
Strand=Plus/Plus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
||||||| ||| | || || | || ||||||||||| || | || ||||||| |
Sbjct 21986 TGCAAATTTTCGTTAAGACTCTTACTGGAAAAACAATAACATTGGAAGTAGAACCATCTG 22045
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
|||| || | ||||||||| |||||||| ||| ||||| |||||||| ||||| |
Sbjct 22046 ATACAATAGAGAATGTAAAAGGCAAAATACAGGATAAGGAAGGAATTCCACCAGATCAGC 22105
Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGAT 146183
|| | || |||||||| |||| ||||| ||
Sbjct 22106 AACGTCTGATTTTTGCTGGTATTGAATTATAT 22137
Score = 86.0 bits (94), Expect = 1e-11
Identities = 104/142 (73%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
|||| ||||| | ||||| | || || ||||| ||||| | || || || | |
Sbjct 20238 TGCAGATATTTGTCAAAACTCTGACTGGGAAAACCATTACACTGGAAGTGGAGCCCTCAG 20297
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
| || ||| ||||||| || |||||| || |||||| || ||||||||||||||||
Sbjct 20298 ACACCATTGAAAATGTGAAGGGTAAAATTCAGGATAAAGAGGGAATTCCACCCGATCAAC 20357
Query 146152 AAAGACTCATTTTTGCAGGTAA 146173
|| | || |||||||| |||||
Sbjct 20358 AACGTCTGATTTTTGCTGGTAA 20379
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 786137223399480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |