Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20nelsoni_20[genbank_20GCA_5F001447455.1_202015-11-24] 2,969 sequences; 47,436,005 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq827 109 9e-19 seq2465 105 1e-17 seq1187 105 1e-17 >seq827 Length=57960 Score = 109 bits (120), Expect = 9e-19 Identities = 111/142 (78%), Gaps = 2/142 (1%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAAC-ATAAC 146090 |||| ||||| | ||||| || ||||||||||| ||||| |||| || || | || | Sbjct 31554 TGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCATCA- 31496 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 ||||| ||| |||||||||||| || || ||| ||||||||||| ||||| |||||| Sbjct 31495 GATACAATTGAAAATGTAAAAAGCAAGATTCAAGACAAAGAAGGCATCCCACCGGATCAA 31436 Query 146151 CAAAGACTCATTTTTGCAGGTA 146172 || | || |||||||| |||| Sbjct 31435 CAGCGGCTTATTTTTGCTGGTA 31414 Score = 104 bits (114), Expect = 4e-17 Identities = 112/146 (77%), Gaps = 2/146 (1%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAAC- 146090 ||||||| ||| | || || | || ||||||||||| ||| | || ||||||| || | Sbjct 30636 TGCAAATTTTCGTTAAGACTCTTACTGGAAAAACAATAACTTTGGAAGTAGAAC-TATCT 30578 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 ||||| || ||||||| ||| ||||| ||| |||||| || |||||||| |||||| Sbjct 30577 GATACAATAGAAAATGTGAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCGGATCAA 30518 Query 146151 CAAAGACTCATTTTTGCAGGTAAACA 146176 ||| | | |||||||| ||||| || Sbjct 30517 CAACGTTTGATTTTTGCTGGTAAGCA 30492 Score = 102 bits (112), Expect = 1e-16 Identities = 110/143 (77%), Gaps = 2/143 (1%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAAC- 146090 ||||||| ||| | || || | || ||||||||||| ||| | || ||||||| || | Sbjct 30354 TGCAAATTTTCGTTAAGACTCTTACTGGAAAAACAATAACTTTGGAAGTAGAAC-TATCT 30296 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 ||||| || ||||||| ||| ||||| ||| |||||| || |||||||| |||||| Sbjct 30295 GATACAATAGAAAATGTGAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCGGATCAA 30236 Query 146151 CAAAGACTCATTTTTGCAGGTAA 146173 ||| | | |||||||| ||||| Sbjct 30235 CAACGTTTGATTTTTGCTGGTAA 30213 Score = 100 bits (110), Expect = 4e-16 Identities = 109/145 (75%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | || || | || ||||||||||| ||| | || ||||||| | Sbjct 30918 TGCAAATTTTCGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATCTG 30859 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| || ||||||| ||| ||||| ||| |||||| || |||||||| ||||||| Sbjct 30858 ATACAATAGAAAATGTGAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCGGATCAAC 30799 Query 146152 AAAGACTCATTTTTGCAGGTAAACA 146176 || | | |||||||| ||||| || Sbjct 30798 AACGTTTGATTTTTGCTGGTAAGCA 30774 Score = 89.7 bits (98), Expect = 8e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| ||||| | ||||| | || || ||||| |||||| | || || |||| | Sbjct 31886 TGCAGATATTTGTGAAAACTCTGACTGGGAAAACCATTACTCTGGAAGTGGAACCCTTAG 31827 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | | ||| ||||||| ||| |||||| || |||||| || |||||||||||||||| Sbjct 31826 ACTCAATTGAAAATGTGAAAGGTAAAATTCAGGATAAAGAGGGAATTCCACCCGATCAAC 31767 Query 146152 AAAGACTCATTTTTGCAGGTAA 146173 | | || |||||||| ||||| Sbjct 31766 AGCGTCTGATTTTTGCTGGTAA 31745 >seq2465 Length=325902 Score = 105 bits (116), Expect = 1e-17 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || | ||||||||||| ||||||||||| || | || ||||| | | Sbjct 17341 TGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATCTG 17282 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| ||||||| |||| |||||| ||| ||| ||||||||||| || ||||| | Sbjct 17281 ATACGATTGAAAATGTGAAAAGTAAAATTCAAGATAAGGAAGGCATTCCGCCTGATCAGC 17222 Query 146152 AAAGACTCATTTTTGCAGGTA 146172 || || | || ||||| |||| Sbjct 17221 AACGATTGATATTTGCTGGTA 17201 Score = 104 bits (114), Expect = 4e-17 Identities = 108/142 (76%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || | ||||||||||| ||||||||||| || | || ||||| | | | Sbjct 17055 TGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAGGTAGAGCCTTCGG 16996 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || ||| ||||||| |||| ||||| ||| ||||||||||||||||| ||||| | Sbjct 16995 ACACGATTGAAAATGTGAAAAGCAAAATTCAAGACAAAGAAGGCATTCCACCTGATCAGC 16936 Query 146152 AAAGACTCATTTTTGCAGGTAA 146173 | || | || ||||| ||||| Sbjct 16935 AGCGATTGATATTTGCTGGTAA 16914 Score = 98.7 bits (108), Expect = 2e-15 Identities = 109/143 (76%), Gaps = 2/143 (1%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAAC-ATAAC 146090 |||| |||||| | || ||| | || |||||||| || || | || || |||| || | Sbjct 18019 TGCAGATATTCGTGAAGACACTTACTGGAAAAACTATAACACTAGAAGTTGAACCATCA- 17961 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 || || || ||||||| |||| |||||| || ||| ||||||||||| || ||||| Sbjct 17960 GACACCATCGAAAATGTTAAAAGTAAAATTCAGGATAAGGAAGGCATTCCTCCTGATCAG 17901 Query 146151 CAAAGACTCATTTTTGCAGGTAA 146173 |||||| | || ||||||||||| Sbjct 17900 CAAAGATTAATCTTTGCAGGTAA 17878 >seq1187 Length=25466 Score = 105 bits (116), Expect = 1e-17 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| ||||| | ||||| || ||||||||||| ||||| |||| || || | | Sbjct 20570 TGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCAG 20629 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| |||||||||||| || || ||| ||||||||||| ||||| ||||||| Sbjct 20630 ATACAATTGAAAATGTAAAAAGCAAGATTCAAGACAAAGAAGGCATCCCACCGGATCAAC 20689 Query 146152 AAAGACTCATTTTTGCAGGTA 146172 | | || |||||||| |||| Sbjct 20690 AGCGGCTTATTTTTGCTGGTA 20710 Score = 95.1 bits (104), Expect = 2e-14 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | || || | || ||||||||||| || | || ||||||| | Sbjct 21986 TGCAAATTTTCGTTAAGACTCTTACTGGAAAAACAATAACATTGGAAGTAGAACCATCTG 22045 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| || | ||||||||| |||||||| ||| ||||| |||||||| ||||| | Sbjct 22046 ATACAATAGAGAATGTAAAAGGCAAAATACAGGATAAGGAAGGAATTCCACCAGATCAGC 22105 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGAT 146183 || | || |||||||| |||| ||||| || Sbjct 22106 AACGTCTGATTTTTGCTGGTATTGAATTATAT 22137 Score = 86.0 bits (94), Expect = 1e-11 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| ||||| | ||||| | || || ||||| ||||| | || || || | | Sbjct 20238 TGCAGATATTTGTCAAAACTCTGACTGGGAAAACCATTACACTGGAAGTGGAGCCCTCAG 20297 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || ||| ||||||| || |||||| || |||||| || |||||||||||||||| Sbjct 20298 ACACCATTGAAAATGTGAAGGGTAAAATTCAGGATAAAGAGGGAATTCCACCCGATCAAC 20357 Query 146152 AAAGACTCATTTTTGCAGGTAA 146173 || | || |||||||| ||||| Sbjct 20358 AACGTCTGATTTTTGCTGGTAA 20379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786137223399480