Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20nelsoni_20[genbank_20GCA_5F001447455.1_202015-11-24]
2,969 sequences; 47,436,005 total letters
Query= NC_023442.1
Length=120420
Score E
Sequences producing significant alignments: (Bits) Value
seq827 122 7e-23
seq2465 120 2e-22
seq1187 111 1e-19
seq2680 105 5e-18
>seq827
Length=57960
Score = 122 bits (134), Expect = 7e-23
Identities = 115/147 (78%), Gaps = 0/147 (0%)
Strand=Plus/Plus
Query 29641 TGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAAT 29700
|| || |||||| | ||||| | ||| |||||||| ||||| |||||||| ||||| | |
Sbjct 30492 TGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATT 30551
Query 29701 TTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCA 29760
|| ||| ||| |||||| || ||||| ||||||||||| | |||||| ||||| |||
Sbjct 30552 TTGCCTTTCACATTTTCTATTGTATCAGATAGTTCTACTTCCAAAGTTATTGTTTTTCCA 30611
Query 29761 GTTAAGGTTTTAACAAATATCTGCATT 29787
|| | || ||||| || || ||||||
Sbjct 30612 GTAAGAGTCTTAACGAAAATTTGCATT 30638
Score = 120 bits (132), Expect = 2e-22
Identities = 113/144 (78%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 29644 TTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTT 29703
|| |||||| | ||||| | ||| |||||||| ||||| |||||||| ||||| | |||
Sbjct 30213 TTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATTTTG 30272
Query 29704 TGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTT 29763
||| ||| |||||| || ||||| ||||||||||| | |||||| ||||| |||||
Sbjct 30273 CCTTTCACATTTTCTATTGTATCAGATAGTTCTACTTCCAAAGTTATTGTTTTTCCAGTA 30332
Query 29764 AAGGTTTTAACAAATATCTGCATT 29787
| || ||||| || || ||||||
Sbjct 30333 AGAGTCTTAACGAAAATTTGCATT 30356
Score = 111 bits (122), Expect = 1e-19
Identities = 109/141 (77%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 29647 CCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT 29706
|||||| ||||||| | ||||||||| || ||||| || ||||| || |||| ||| |
Sbjct 55492 CCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCCTGTATTTTCCCT 55551
Query 29707 TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAG 29766
|| ||| |||| | || ||||| |||| ||||| | || || ||||||||||| | |
Sbjct 55552 TTCACATTTTCAATTGTATCAGATGGTTCCACTTCCAATGTGATGGTTTTGCCAGTGAGG 55611
Query 29767 GTTTTAACAAATATCTGCATT 29787
|| |||||||| || ||||||
Sbjct 55612 GTCTTAACAAAAATTTGCATT 55632
Score = 96.9 bits (106), Expect = 3e-15
Identities = 109/146 (75%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 29644 TTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTT 29703
|| |||||| | |||| | || ||||| || ||||| |||||||| || || | |||
Sbjct 31745 TTACCAGCAAAAATCAGACGCTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 31804
Query 29704 TGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTT 29763
||| ||| |||| | | ||| | |||| ||||| ||||| || ||||| |||||
Sbjct 31805 CCTTTCACATTTTCAATTGAGTCTAAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 31864
Query 29764 AAGGTTTTAACAAATATCTGCATTTT 29789
| ||||| |||||||||||||||||
Sbjct 31865 AGAGTTTTCACAAATATCTGCATTTT 31890
Score = 86.0 bits (94), Expect = 5e-12
Identities = 103/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 29647 CCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT 29706
|||||| | || | | || |||||||| || || || ||||||||||| | || |
Sbjct 31416 CCAGCAAAAATAAGCCGCTGTTGATCCGGTGGGATGCCTTCTTTGTCTTGAATCTTGCTT 31475
Query 29707 TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAG 29766
|| ||| |||| | || || || | || |||||||| || || ||||| || || ||
Sbjct 31476 TTTACATTTTCAATTGTATCTGATGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCAAC 31535
Query 29767 GTTTTAACAAATATCTGCAT 29786
||||| ||||||||||||||
Sbjct 31536 GTTTTCACAAATATCTGCAT 31555
>seq2465
Length=325902
Score = 120 bits (132), Expect = 2e-22
Identities = 113/144 (78%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 29644 TTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTT 29703
|| |||||| ||||||||| |||||||| || ||||| || ||||||||||| | |||
Sbjct 16914 TTACCAGCAAATATCAATCGCTGCTGATCAGGTGGAATGCCTTCTTTGTCTTGAATTTTG 16973
Query 29704 TGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTT 29763
||| ||| |||| | ||||| ||| | ||||| || | || || ||||| ||||||
Sbjct 16974 CTTTTCACATTTTCAATCGTGTCCGAAGGCTCTACCTCCAATGTGATTGTTTTTCCAGTT 17033
Query 29764 AAGGTTTTAACAAATATCTGCATT 29787
|| ||||| ||||| |||||||||
Sbjct 17034 AATGTTTTCACAAAAATCTGCATT 17057
Score = 100 bits (110), Expect = 2e-16
Identities = 108/143 (76%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 29644 TTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTT 29703
|| || ||| | || |||||||||||||| || ||||| || || || || || | |||
Sbjct 17878 TTACCTGCAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAATTTTA 17937
Query 29704 TGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTT 29763
||| ||| |||| | ||||| || |||| ||||| || ||||||||||| |||||
Sbjct 17938 CTTTTAACATTTTCGATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAGTA 17997
Query 29764 AAGGTTTTAACAAATATCTGCAT 29786
| || || || |||||||||||
Sbjct 17998 AGTGTCTTCACGAATATCTGCAT 18020
>seq1187
Length=25466
Score = 111 bits (122), Expect = 1e-19
Identities = 109/141 (77%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 29647 CCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT 29706
|||||| ||||||| | ||||||||| || ||||| || ||||| || |||| ||| |
Sbjct 22407 CCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCCTGTATTTTCCCT 22348
Query 29707 TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAG 29766
|| ||| |||| | || ||||| |||| ||||| | || || ||||||||||| | |
Sbjct 22347 TTCACATTTTCAATTGTATCAGATGGTTCCACTTCCAATGTGATGGTTTTGCCAGTGAGG 22288
Query 29767 GTTTTAACAAATATCTGCATT 29787
|| |||||||| || ||||||
Sbjct 22287 GTCTTAACAAAAATTTGCATT 22267
Score = 102 bits (112), Expect = 6e-17
Identities = 107/141 (76%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 29647 CCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT 29706
|||||| | |||| | ||||||||| || ||||| || ||||| || |||| ||| |
Sbjct 20990 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCCTGTATTTTCCCT 20931
Query 29707 TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAG 29766
|| ||| |||| | || ||||| |||| ||||| | || || ||||||||||| | |
Sbjct 20930 TTCACATTTTCAATTGTATCAGATGGTTCCACTTCCAATGTGATGGTTTTGCCAGTGAGG 20871
Query 29767 GTTTTAACAAATATCTGCATT 29787
|| |||||||| || ||||||
Sbjct 20870 GTCTTAACAAAAATTTGCATT 20850
Score = 102 bits (112), Expect = 6e-17
Identities = 107/141 (76%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 29647 CCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT 29706
|||||| | |||| | ||||||||| || ||||| || ||||| || |||| ||| |
Sbjct 21273 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCCTGTATTTTCCCT 21214
Query 29707 TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAG 29766
|| ||| |||| | || ||||| |||| ||||| | || || ||||||||||| | |
Sbjct 21213 TTCACATTTTCAATTGTATCAGATGGTTCCACTTCCAATGTGATGGTTTTGCCAGTGAGG 21154
Query 29767 GTTTTAACAAATATCTGCATT 29787
|| |||||||| || ||||||
Sbjct 21153 GTCTTAACAAAAATTTGCATT 21133
Score = 102 bits (112), Expect = 6e-17
Identities = 107/141 (76%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 29647 CCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT 29706
|||||| | |||| | ||||||||| || ||||| || ||||| || |||| ||| |
Sbjct 21556 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCCTGTATTTTCCCT 21497
Query 29707 TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAG 29766
|| ||| |||| | || ||||| |||| ||||| | || || ||||||||||| | |
Sbjct 21496 TTCACATTTTCAATTGTATCAGATGGTTCCACTTCCAATGTGATGGTTTTGCCAGTGAGG 21437
Query 29767 GTTTTAACAAATATCTGCATT 29787
|| |||||||| || ||||||
Sbjct 21436 GTCTTAACAAAAATTTGCATT 21416
Score = 102 bits (112), Expect = 6e-17
Identities = 107/141 (76%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 29647 CCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT 29706
|||||| | ||||| | ||| |||||||| ||||| || || || || |||| ||| |
Sbjct 21839 CCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTCCCT 21780
Query 29707 TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAG 29766
|| ||| |||| | || ||||| |||| ||||| | || || ||||||||||| | |
Sbjct 21779 TTCACATTTTCAATTGTATCAGATGGTTCCACTTCCAATGTGATGGTTTTGCCAGTGAGG 21720
Query 29767 GTTTTAACAAATATCTGCATT 29787
|| |||||||| || ||||||
Sbjct 21719 GTCTTAACAAAAATTTGCATT 21699
Score = 96.9 bits (106), Expect = 3e-15
Identities = 109/146 (75%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 29644 TTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTT 29703
|| |||||| | |||| | ||| ||||| || ||||| |||||||| || || | |||
Sbjct 20379 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 20320
Query 29704 TGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTT 29763
|| ||| |||| | ||||| || | || ||||| || || || ||||| |||||
Sbjct 20319 CCCTTCACATTTTCAATGGTGTCTGAGGGCTCCACTTCCAGTGTAATGGTTTTCCCAGTC 20260
Query 29764 AAGGTTTTAACAAATATCTGCATTTT 29789
| ||||| |||||||||||||||||
Sbjct 20259 AGAGTTTTGACAAATATCTGCATTTT 20234
Score = 86.0 bits (94), Expect = 5e-12
Identities = 103/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 29647 CCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT 29706
|||||| | || | | || |||||||| || || || ||||||||||| | || |
Sbjct 20708 CCAGCAAAAATAAGCCGCTGTTGATCCGGTGGGATGCCTTCTTTGTCTTGAATCTTGCTT 20649
Query 29707 TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAG 29766
|| ||| |||| | || || || | || |||||||| || || ||||| || || ||
Sbjct 20648 TTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCAAC 20589
Query 29767 GTTTTAACAAATATCTGCAT 29786
||||| ||||||||||||||
Sbjct 20588 GTTTTCACAAATATCTGCAT 20569
>seq2680
Length=639
Score = 105 bits (116), Expect = 5e-18
Identities = 153/216 (71%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630
||| |||||||||||||| |||||||| || || ||||| || || || | ||| ||
Sbjct 365 ACGAAGCACCAAATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCTGCCAGGGTACGGCC 306
Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690
||| || || || || || ||| | || | || ||||| || || || |||||||| ||
Sbjct 305 ATCCTCAAGCTGCTTTCCGGCAAAGATAAGCCTCTGCTGGTCTGGTGGGATACCCTCCTT 246
Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750
||| || | ||| || ||| | || | ||||| || || || || | || ||
Sbjct 245 GTCCTGGATTTTAGCCTTCACATTATCGATGGTGTCTGAGCTCTCCACCTCCAAGGTGAT 186
Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
|| || || || ||||| || ||||| ||||||||
Sbjct 185 GGTCTTTCCGGTCAAGGTCTTGACAAAGATCTGCAT 150
Score = 87.8 bits (96), Expect = 1e-12
Identities = 95/126 (75%), Gaps = 0/126 (0%)
Strand=Plus/Minus
Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630
||| |||||||||||||| |||||||| || || ||||| ||||| || | ||||||
Sbjct 137 ACGAAGCACCAAATGAAGGGTGGATTCCTTCTGGATGTTGTAATCTGCCAGGGTGCGGCC 78
Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690
||| || || || || || ||| | |||| | || || ||||| || || ||||| ||
Sbjct 77 ATCCTCAAGCTGCTTTCCGGCAAAGATCAGACGCTGTTGGTCCGGGGGGATTCCCTCCTT 18
Query 29691 GTCTTG 29696
||| ||
Sbjct 17 GTCCTG 12
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 385205260963629
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