Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20nelsoni_20[genbank_20GCA_5F001447455.1_202015-11-24]
2,969 sequences; 47,436,005 total letters
Query= NC_023639.1
Length=1168989
Score E
Sequences producing significant alignments: (Bits) Value
seq2516 340 1e-87
seq2371 145 6e-29
seq1837 100 2e-15
>seq2516
Length=768920
Score = 340 bits (376), Expect = 1e-87
Identities = 496/701 (71%), Gaps = 0/701 (0%)
Strand=Plus/Plus
Query 282180 TTACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTA 282239
|||| | ||||| || || || ||||| ||||| | ||| | || | |||| | |
Sbjct 551083 TTACCATTCGATTGTCGAAGTCCTCACCACCCAAATGAGTGTCACCAGCGGTAGACTTGA 551142
Query 282240 CTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATAT 282299
| | |||| |||||||| | | ||||| || |||||| || |||||||| | |
Sbjct 551143 CCTCAAAAATGCCATCTTCGATGGTCAAAATAGACACATCAAAAGTACCACCACCAAGGT 551202
Query 282300 CAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAG 282359
|||| || || ||||| ||| | | ||| ||||||| ||||| |||| ||||
Sbjct 551203 CAAATATCAGAACATTTCGTTCACCGCCACCCTTTCTATCAAGTCCATAAGCAATTGCAG 551262
Query 282360 CAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTT 282419
| || |||||||| || || || | ||||||||| | ||||| ||| |||| || ||||
Sbjct 551263 CCGCTGTTGGTTCGTTGATGATACGCAAAACATTCAAACCAGAAATCGTTCCAGCGTCTT 551322
Query 282420 TAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTA 282479
| || || || | || ||||||||||||||||| ||||||||||| |||||||| | |
Sbjct 551323 TGGTCGCCTGACGCTGAGAATCGTTAAAATATGCCGGAACAGTAATTACGGCATCCTTAA 551382
Query 282480 CTTCTTTTCCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAA 282539
| |||||| | |||||| || |||| ||||| || ||| | ||| | |
Sbjct 551383 CAGTTTTTCCCAAATAAGCTTCGGCAGTTTCCTTCATCTTCACTAACACCATAGCACTGA 551442
Query 282540 TTTGTTCTGGAGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTAT 282599
||| ||| || | | || ||| || || || ||| |||| || | |||||
Sbjct 551443 TTTCTTCGGGTGTAAATGACTTCGACTCGCCTTTGTATTCGACTTGAATTTTAGGTTTCG 551502
Query 282600 TACCAACATTAATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCAT 282659
||| | || |||||||| |||||||||| ||||||||| || || || ||||
Sbjct 551503 ATCCATCGTTGATAACTTTGAATGGCCAATGTTTCATATCAGACTGCACCGCAGCATCAT 551562
Query 282660 TAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAG 282719
||| | ||| || | ||| || |||||||||| ||||| ||||| | |||
Sbjct 551563 CAAATCGACGACCGATGAGTCGCTTCGCATCAAAAACTGTATTATGAGGATTCAACGCAA 551622
Query 282720 CTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATG 282779
|||||| ||| || |||||||||||||| | || || || || || | |||||| ||
Sbjct 551623 CTTGATTTTTTGCCGCATCTCCAATCAGTCGCTCGGTATCGGTGAAAGCAACATAACTTG 551682
Query 282780 GAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACAC 282839
| || || ||||| |||||||| || |||||||||||||||||||||| || | || |
Sbjct 551683 GCGTGGTACGATTCCCTTGATCGTTGGCAATAATTTCAACTTTACCATGCTGGAACACGC 551742
Query 282840 CTACACAACTAAAAGTTGTTCCTAAATCAATACCAATAGCA 282880
| |||||||| | || || || |||||||| |||||||||
Sbjct 551743 CAACACAACTGTAGGTAGTACCCAAATCAATTCCAATAGCA 551783
Score = 114 bits (126), Expect = 1e-19
Identities = 196/282 (70%), Gaps = 2/282 (1%)
Strand=Plus/Plus
Query 281771 ATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCA 281830
||| | || ||||| ||||||||||| || ||||| | ||| || |||| ||| |||
Sbjct 550619 ATACCTGCTCCATAGGCAACAGCTTCGTCTGGATTGATGCTTTTGTTAAGTTCTTTCCCA 550678
Query 281831 TTGAAAAAAT-TTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAA 281889
|| ||||||| ||| || || || | || |||||||| |||| ||||| || || ||
Sbjct 550679 TTAAAAAAATCTTGCAACAACTTCT-GAACTTTAGGAATGCGAGTAGATCCACCCACCAA 550737
Query 281890 TACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGG 281949
|||| |||||| | | || ||| || | ||| | || | | ||||||| || ||
Sbjct 550738 AACAACTTCATGAATCACTGCTTTGTCTAATTTCGCGTCACGAAGAGCTTTTTCTACTGG 550797
Query 281950 TTCAAGACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGT 282009
||| | | || | |||||||| | | | |||||||| |||||| |||| |||
Sbjct 550798 TTCCAAAGTAGAACGGAACAAGTCAGCATTCAACTCTTCGAAGCGAGCTCTGGTAATAGT 550857
Query 282010 GACATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAAT 282051
| | ||||||| |||||| | | ||||| ||||||
Sbjct 550858 GGTGTAGAAATCAATGCCTTCGTAGAGGCTATCAATTTCAAT 550899
>seq2371
Length=372962
Score = 145 bits (160), Expect = 6e-29
Identities = 318/469 (68%), Gaps = 13/469 (3%)
Strand=Plus/Minus
Query 282368 GGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCT 282427
||||| || || |||| | |||||||||||||||||| | || |||||||| || |||
Sbjct 121406 GGTTCGTTGATGATTCGAACAACATTAAGACCAGCAATGGTGCCCGCATCTTTGGTAGCT 121347
Query 282428 TGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTT 282487
|| | ||||| |||||| ||||| || ||||| || | ||||||| | | ||||||||
Sbjct 121346 TGACGTTGTGCATCGTTGAAATAAGCGGGAACGGTGACGACGGCATTTTTCACTTCTTTG 121287
Query 282488 CCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCT 282547
|| | |||||| || ||| ||||||||| |||| ||| | |||||||| |||
Sbjct 121286 CCCAAATAAGCTTCGGCAATTTCTTTCATTTTCAACAAAACCATCGCTGAAATTTCTTCG 121227
Query 282548 GGAG---AATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCA 282604
|||| | ||| ||| |||| | | | | || || | ||||| || | |
Sbjct 121226 GGAGTGAACAATTTCTT---TTCACCGTTAACAGTAAGTTGAACGTTCGGTTTGTT-CGA 121171
Query 282605 ACATT-AATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAA 282663
|| || || ||||||||| ||| ||| | ||||| ||| | || |
Sbjct 121170 TTTTTCAACCACCGCAAATGGCCACATTTTACGATCCGCTTGAAGACTCTTATCCGACCA 121111
Query 282664 ATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTG-CAGCTT 282722
|||| ||| | | || ||||| || || | ||||| |||||| | || | |
Sbjct 121110 TTCTCGACCGACCATACGCTTTGCGTCGAATACCGTATTCTCAGGATTAGTGGTCAAC-T 121052
Query 282723 GATATTTGGCTGCATCTCCAATCAGATGTT---CTGTCTCTGTAAATGAAACATATGATG 282779
||| ||| || || || || |||||| | | || | ||||| | ||||| || |
Sbjct 121051 GATTTTTCGCGGCGTCGCCGATCAGACGCTCCCCTTCCGGCGTAAAAGCTACATACGACG 120992
Query 282780 GAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATT 282828
| || | ||||| || |||||||| |||||||||||||| ||||||
Sbjct 120991 GGGTGATCCGATTGCCCTGATCATTGGCAATAATTTCAACACGACCATT 120943
>seq1837
Length=395467
Score = 100 bits (110), Expect = 2e-15
Identities = 119/161 (74%), Gaps = 3/161 (2%)
Strand=Plus/Plus
Query 607623 TGTGGTACTGATGAATATGGAACTACAACAATGATTAGAGCTCGTAAGGAAGGTGTAACT 607682
|||||||| ||||||||||| ||| | ||| | | |||| | | |||||||| |||
Sbjct 368060 TGTGGTACAGATGAATATGGGACTGCCACAGAAACAAAAGCTATTGAAGAAGGTGTGACT 368119
Query 607683 TGTCGTGAACTTTGTGATAAGTATTTTGAGTTACACAAAAAAGTTTATGATTGGTTTAAT 607742
| | || |||||||| |||| ||| || || |||||||||| |||||||||
Sbjct 368120 CCCATTCAGCTCTGTGATAAATATTATGAATTGCATCGCGAAGTTTATGAATGGTTTAAT 368179
Query 607743 ATTGAATTTGATGTTTTTGGTAGAACATCTACAACAAAACA 607783
|| |||||||| ||||||| | ||| |||||||||||
Sbjct 368180 ATAAAATTTGATAATTTTGGTCGCACA---ACAACAAAACA 368217
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3740484634646994
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |