Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20nelsoni_20[genbank_20GCA_5F001447455.1_202015-11-24]
2,969 sequences; 47,436,005 total letters
Query= NC_024446.1
Length=306862
Score E
Sequences producing significant alignments: (Bits) Value
seq827 129 1e-24
seq2465 125 1e-23
seq1187 122 2e-22
seq378 120 6e-22
seq11 120 6e-22
seq2680 118 2e-21
seq1292 98.7 2e-15
seq2706 93.3 8e-14
seq1696 91.5 3e-13
seq401 87.8 4e-12
>seq827
Length=57960
Score = 129 bits (142), Expect = 1e-24
Identities = 113/141 (80%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730
|||||||| || || | |||||||||||||| ||||| ||||||||||||||||| ||
Sbjct 29629 CCAGCAAAAATCAGACGCTGTTGATCTGGAGGAATTCCCTCCTTATCTTGAATCTTCCCT 29688
Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790
|| ||||| |||| |||||| ||||| |||||||| || || ||||| || || |
Sbjct 29689 TTCACATTCTCAACAGTATCAGATGGTTCCACTTCCAACGTGATGGTCTTCCCAGTTAGG 29748
Query 82791 GTCTTTACAAATATCTGCATT 82811
||||| ||||| || ||||||
Sbjct 29749 GTCTTAACAAAAATTTGCATT 29769
Score = 122 bits (134), Expect = 2e-22
Identities = 115/147 (78%), Gaps = 0/147 (0%)
Strand=Plus/Plus
Query 82665 TGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATC 82724
|| || |||||||| || | | ||||||||| || || ||||| || |||||||||||
Sbjct 30774 TGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATT 30833
Query 82725 TTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCT 82784
|| |||| |||||||| || |||||| |||||||||||||||||||| || || ||
Sbjct 30834 TTGCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCCA 30893
Query 82785 GTCAACGTCTTTACAAATATCTGCATT 82811
|| | ||||| || || || ||||||
Sbjct 30894 GTAAGGGTCTTAACGAAAATTTGCATT 30920
Score = 122 bits (134), Expect = 2e-22
Identities = 111/140 (79%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730
|||||||| || || | |||||||| || || || ||||| || ||||||||||| |
Sbjct 31416 CCAGCAAAAATAAGCCGCTGTTGATCCGGTGGGATGCCTTCTTTGTCTTGAATCTTGCTT 31475
Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790
|||||||||||||| ||||| || || ||||| | || ||||| || |||||||||
Sbjct 31476 TTTACATTTTCAATTGTATCTGATGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCAAC 31535
Query 82791 GTCTTTACAAATATCTGCAT 82810
|| || ||||||||||||||
Sbjct 31536 GTTTTCACAAATATCTGCAT 31555
Score = 116 bits (128), Expect = 7e-21
Identities = 112/144 (78%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727
|| |||||||| || | | ||||||||| || || ||||| || ||||||||||| ||
Sbjct 30213 TTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATTTTG 30272
Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787
|||| |||||||| || |||||| ||||||||||||||||||| || || || ||
Sbjct 30273 CCTTTCACATTTTCTATTGTATCAGATAGTTCTACTTCCAAAGTTATTGTTTTTCCAGTA 30332
Query 82788 AACGTCTTTACAAATATCTGCATT 82811
| ||||| || || || ||||||
Sbjct 30333 AGAGTCTTAACGAAAATTTGCATT 30356
Score = 116 bits (128), Expect = 7e-21
Identities = 114/147 (78%), Gaps = 0/147 (0%)
Strand=Plus/Plus
Query 82665 TGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATC 82724
|| || |||||||| || | | ||||||||| || || ||||| || |||||||||||
Sbjct 30492 TGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATT 30551
Query 82725 TTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCT 82784
|| |||| |||||||| || |||||| ||||||||||||||||||| || || ||
Sbjct 30552 TTGCCTTTCACATTTTCTATTGTATCAGATAGTTCTACTTCCAAAGTTATTGTTTTTCCA 30611
Query 82785 GTCAACGTCTTTACAAATATCTGCATT 82811
|| | ||||| || || || ||||||
Sbjct 30612 GTAAGAGTCTTAACGAAAATTTGCATT 30638
Score = 114 bits (126), Expect = 3e-20
Identities = 110/141 (78%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730
|||||||| || | | ||| |||||||| || |||||||| ||||| || || || ||
Sbjct 55492 CCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCCTGTATTTTCCCT 55551
Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790
|| ||||||||||| |||||| ||||| |||||||| || || || ||||| || |
Sbjct 55552 TTCACATTTTCAATTGTATCAGATGGTTCCACTTCCAATGTGATGGTTTTGCCAGTGAGG 55611
Query 82791 GTCTTTACAAATATCTGCATT 82811
||||| ||||| || ||||||
Sbjct 55612 GTCTTAACAAAAATTTGCATT 55632
Score = 107 bits (118), Expect = 4e-18
Identities = 110/144 (76%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727
|| |||||||| || || | |||||||| || || ||||| || ||||| ||||| ||
Sbjct 31745 TTACCAGCAAAAATCAGACGCTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 31804
Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787
|||| ||||||||||| | || ||||| ||||||| ||| || || || || |||
Sbjct 31805 CCTTTCACATTTTCAATTGAGTCTAAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 31864
Query 82788 AACGTCTTTACAAATATCTGCATT 82811
| || || |||||||||||||||
Sbjct 31865 AGAGTTTTCACAAATATCTGCATT 31888
>seq2465
Length=325902
Score = 125 bits (138), Expect = 1e-23
Identities = 114/141 (81%), Gaps = 2/141 (1%)
Strand=Plus/Plus
Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730
|||||||| || | || ||| ||||| || || || ||||||||||||||||| ||| ||
Sbjct 17203 CCAGCAAATATCAATCGTTGCTGATCAGGCGGAATGCCTTCCTTATCTTGAAT-TTTACT 17261
Query 82731 TTT-ACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAA 82789
||| |||||||||||||||||| || ||||||||||| || || || || || || ||
Sbjct 17262 TTTCACATTTTCAATCGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTAA 17321
Query 82790 CGTCTTTACAAATATCTGCAT 82810
|| || ||||| ||||||||
Sbjct 17322 TGTTTTCACAAAAATCTGCAT 17342
Score = 116 bits (128), Expect = 7e-21
Identities = 116/148 (78%), Gaps = 2/148 (1%)
Strand=Plus/Plus
Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727
|| || |||||||||| |||||| ||||| ||||| || ||||||||||| ||||| |||
Sbjct 17878 TTACCTGCAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAAT-TTT 17936
Query 82728 GCTTTT-ACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGT 82786
||||| |||||||| || || || ||||| ||||| | ||||| || || || ||
Sbjct 17937 ACTTTTAACATTTTCGATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAGT 17996
Query 82787 CAACGTCTTTACAAATATCTGCATTATT 82814
| ||||| || ||||||||||| |||
Sbjct 17997 AAGTGTCTTCACGAATATCTGCATAATT 18024
Score = 111 bits (122), Expect = 3e-19
Identities = 113/145 (78%), Gaps = 2/145 (1%)
Strand=Plus/Plus
Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727
|| |||||||| || | || || ||||| || || || ||||| || |||||||| |||
Sbjct 16914 TTACCAGCAAATATCAATCGCTGCTGATCAGGTGGAATGCCTTCTTTGTCTTGAAT-TTT 16972
Query 82728 GCTTTT-ACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGT 82786
|||||| |||||||||||||| || ||| ||||| ||||| || || || || || ||
Sbjct 16973 GCTTTTCACATTTTCAATCGTGTCCGAAGGCTCTACCTCCAATGTGATTGTTTTTCCAGT 17032
Query 82787 CAACGTCTTTACAAATATCTGCATT 82811
|| || || ||||| |||||||||
Sbjct 17033 TAATGTTTTCACAAAAATCTGCATT 17057
>seq1187
Length=25466
Score = 122 bits (134), Expect = 2e-22
Identities = 111/140 (79%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730
|||||||| || || | |||||||| || || || ||||| || ||||||||||| |
Sbjct 20708 CCAGCAAAAATAAGCCGCTGTTGATCCGGTGGGATGCCTTCTTTGTCTTGAATCTTGCTT 20649
Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790
|||||||||||||| ||||| || || ||||| | || ||||| || |||||||||
Sbjct 20648 TTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCAAC 20589
Query 82791 GTCTTTACAAATATCTGCAT 82810
|| || ||||||||||||||
Sbjct 20588 GTTTTCACAAATATCTGCAT 20569
Score = 120 bits (132), Expect = 6e-22
Identities = 111/141 (79%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730
|||||||| || || | ||| |||||||| || |||||||| ||||| || || || ||
Sbjct 20990 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCCTGTATTTTCCCT 20931
Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790
|| ||||||||||| |||||| ||||| |||||||| || || || ||||| || |
Sbjct 20930 TTCACATTTTCAATTGTATCAGATGGTTCCACTTCCAATGTGATGGTTTTGCCAGTGAGG 20871
Query 82791 GTCTTTACAAATATCTGCATT 82811
||||| ||||| || ||||||
Sbjct 20870 GTCTTAACAAAAATTTGCATT 20850
Score = 120 bits (132), Expect = 6e-22
Identities = 111/141 (79%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730
|||||||| || || | ||| |||||||| || |||||||| ||||| || || || ||
Sbjct 21273 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCCTGTATTTTCCCT 21214
Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790
|| ||||||||||| |||||| ||||| |||||||| || || || ||||| || |
Sbjct 21213 TTCACATTTTCAATTGTATCAGATGGTTCCACTTCCAATGTGATGGTTTTGCCAGTGAGG 21154
Query 82791 GTCTTTACAAATATCTGCATT 82811
||||| ||||| || ||||||
Sbjct 21153 GTCTTAACAAAAATTTGCATT 21133
Score = 120 bits (132), Expect = 6e-22
Identities = 111/141 (79%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730
|||||||| || || | ||| |||||||| || |||||||| ||||| || || || ||
Sbjct 21556 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCCTGTATTTTCCCT 21497
Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790
|| ||||||||||| |||||| ||||| |||||||| || || || ||||| || |
Sbjct 21496 TTCACATTTTCAATTGTATCAGATGGTTCCACTTCCAATGTGATGGTTTTGCCAGTGAGG 21437
Query 82791 GTCTTTACAAATATCTGCATT 82811
||||| ||||| || ||||||
Sbjct 21436 GTCTTAACAAAAATTTGCATT 21416
Score = 120 bits (132), Expect = 6e-22
Identities = 111/141 (79%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730
|||||||| || | | ||||||||| || || |||||||||||||| || || || ||
Sbjct 21839 CCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTCCCT 21780
Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790
|| ||||||||||| |||||| ||||| |||||||| || || || ||||| || |
Sbjct 21779 TTCACATTTTCAATTGTATCAGATGGTTCCACTTCCAATGTGATGGTTTTGCCAGTGAGG 21720
Query 82791 GTCTTTACAAATATCTGCATT 82811
||||| ||||| || ||||||
Sbjct 21719 GTCTTAACAAAAATTTGCATT 21699
Score = 120 bits (132), Expect = 6e-22
Identities = 111/141 (79%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730
|||||||| || || | ||| |||||||| || |||||||||||||| || || || ||
Sbjct 22124 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCCTTATCCTGTATTTTGCCT 22065
Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790
|||||||| || || |||||| |||||||||||||| ||||| || || || || |
Sbjct 22064 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAATGTTATTGTTTTTCCAGTAAGA 22005
Query 82791 GTCTTTACAAATATCTGCATT 82811
||||| || || || ||||||
Sbjct 22004 GTCTTAACGAAAATTTGCATT 21984
Score = 114 bits (126), Expect = 3e-20
Identities = 110/141 (78%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730
|||||||| || | | ||| |||||||| || |||||||| ||||| || || || ||
Sbjct 22407 CCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCCTGTATTTTCCCT 22348
Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790
|| ||||||||||| |||||| ||||| |||||||| || || || ||||| || |
Sbjct 22347 TTCACATTTTCAATTGTATCAGATGGTTCCACTTCCAATGTGATGGTTTTGCCAGTGAGG 22288
Query 82791 GTCTTTACAAATATCTGCATT 82811
||||| ||||| || ||||||
Sbjct 22287 GTCTTAACAAAAATTTGCATT 22267
Score = 102 bits (112), Expect = 2e-16
Identities = 109/144 (76%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727
|| |||||||| || || | ||||||||| || || ||||| || ||||| ||||| ||
Sbjct 20379 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 20320
Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787
| || ||||||||||| || || || || ||||||| || || || || || |||
Sbjct 20319 CCCTTCACATTTTCAATGGTGTCTGAGGGCTCCACTTCCAGTGTAATGGTTTTCCCAGTC 20260
Query 82788 AACGTCTTTACAAATATCTGCATT 82811
| || || |||||||||||||||
Sbjct 20259 AGAGTTTTGACAAATATCTGCATT 20236
>seq378
Length=398
Score = 120 bits (132), Expect = 6e-22
Identities = 111/141 (79%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730
|||||||| || | | ||| |||||||| || |||||||||||||| || || || ||
Sbjct 254 CCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCCTTATCCTGTATTTTGCCT 195
Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790
|||||||| || || |||||| |||||||||||||| || ||||| ||||| || |
Sbjct 194 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAAGA 135
Query 82791 GTCTTTACAAATATCTGCATT 82811
||||| || || || ||||||
Sbjct 134 GTCTTAACGAAAATTTGCATT 114
>seq11
Length=460
Score = 120 bits (132), Expect = 6e-22
Identities = 113/144 (78%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727
|| |||||||| || | | ||||||||| || || |||||||||||||| || || ||
Sbjct 202 TTACCAGCAAATATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTG 143
Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787
|||||||||| || || |||||| |||||||||||||| || ||||| ||||| ||
Sbjct 142 CCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTA 83
Query 82788 AACGTCTTTACAAATATCTGCATT 82811
| ||||| || || || ||||||
Sbjct 82 AGAGTCTTAACGAAAATTTGCATT 59
Score = 98.7 bits (108), Expect = 2e-15
Identities = 90/114 (79%), Gaps = 0/114 (0%)
Strand=Plus/Minus
Query 82698 GGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT 82757
|| || |||||||||||||| || || || |||||||||| || || |||||| |||
Sbjct 460 GGTGGAATTCCTTCCTTATCCTGTATTTTGCCTTTTACATTCTCTATTGTATCAGATGGT 401
Query 82758 TCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811
||||||||||| || ||||| ||||| || | ||||| || || || ||||||
Sbjct 400 TCTACTTCCAAGGTGATCGTTTTGCCGGTAAGAGTCTTAACGAAAATTTGCATT 347
>seq2680
Length=639
Score = 118 bits (130), Expect = 2e-21
Identities = 158/217 (73%), Gaps = 2/217 (1%)
Strand=Plus/Minus
Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654
||| || || | ||| || ||||| || ||||| ||||| || || | || | | ||
Sbjct 593 ACGGAGGACAAGGTGAAGGGTAGACTCCTTCTGGATATTGTAGTCTGCCAGGGTACGCCC 534
Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714
|| || || || || || |||||||| || || || || ||||| || || || |||||
Sbjct 533 ATCCTCGAGCTGCTTGCCGGCAAAGATAAGCCTCTGCTGGTCTGGTGGAATCCCCTCCTT 474
Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTACTTCCAAAGTTA 82773
||||||||||| || || ||||| ||||| || || | || | || || || | || |
Sbjct 473 GTCTTGAATCTTGGCCTTCACATTGTCAATGGTGTC-TGAGCTCTCCACCTCAAGGGTGA 415
Query 82774 TCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
| ||||| ||||| | ||||| ||||| ||||||||
Sbjct 414 TGGTCTTCCCTGTAAGAGTCTTGACAAAAATCTGCAT 378
>seq1292
Length=279
Score = 98.7 bits (108), Expect = 2e-15
Identities = 123/169 (73%), Gaps = 0/169 (0%)
Strand=Plus/Plus
Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641
|||| || | | ||| || || || || || || || || ||||| || || |||||||
Sbjct 93 TACCACCGCGAAGACGGAGCACCAAATGGAGGGTTGACTCCTTCTGAATGTTGTAATCAG 152
Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701
| | |||||||| || || || ||||| || ||||| | || || ||||| || |
Sbjct 153 CCAAGGTCCTACCGTCCTCGAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGATCCGGTG 212
Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATC 82750
| || ||||||||||| || ||||| || || || || ||||| |||||
Sbjct 213 GGATCCCTTCCTTATCCTGGATCTTGGCCTTGACGTTATCAATTGTATC 261
>seq2706
Length=224770
Score = 93.3 bits (102), Expect = 8e-14
Identities = 83/104 (80%), Gaps = 0/104 (0%)
Strand=Plus/Minus
Query 82707 CCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCC 82766
|||||||| || ||||| || || || ||||| | ||| |||||| ||| |||||||||
Sbjct 73251 CCTTCCTTGTCCTGAATTTTAGCCTTCACATTCTGAATTGTATCAGAAGGCTCTACTTCC 73192
Query 82767 AAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
||||| || ||||| ||||| | || || |||||||| |||||
Sbjct 73191 AAAGTGATGGTCTTTCCTGTTAGAGTTTTCACAAATATTTGCAT 73148
>seq1696
Length=245
Score = 91.5 bits (100), Expect = 3e-13
Identities = 88/113 (78%), Gaps = 0/113 (0%)
Strand=Plus/Minus
Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727
|| |||||||| || | | ||||||||| || || |||||||| ||||| || || ||
Sbjct 113 TTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCTTTATCCTGTATTTTG 54
Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTT 82780
| |||||||| || || |||||| |||||||||||||| || ||||| ||
Sbjct 53 CCCTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTT 1
>seq401
Length=108154
Score = 87.8 bits (96), Expect = 4e-12
Identities = 199/299 (67%), Gaps = 3/299 (1%)
Strand=Plus/Minus
Query 143985 GATCCAGTCTTGCATATAGAACTTAGGAGATGGGCTGATGTTTTTATTATAGCGCCCTTA 144044
||||| || | || ||||||| || ||||||| || |||| | || ||||| ||
Sbjct 56486 GATCCTGTTCTTCACGTAGAACTAAGACGATGGGCAGACATTTTGGTGATTGCGCCGTTG 56427
Query 144045 ACAGCAAATACGTTAGCAAAAATAGCCAATGGTATATGCGATAATTTACTAACATCTATA 144104
|||||| || | || ||||| ||||||| || || |||||||| ||||| | |
Sbjct 56426 GACGCAAATTCGATGGCGAAAATTTCCAATGGAATTTGTGATAATTTGTTAACAAGTTTG 56367
Query 144105 GTAAGAGCCTGGGATATAAATAAACCTCTTATTTTTTGCCCCGCTATGAATACCCTTATG 144164
|| |||| |||||| || || | | | || ||||| ||||||||| |||
Sbjct 56366 GTTCGAGCTTGGGATGGTGCAAAGCCGGTCTATATATGTCCCGCAATGAATACCTACATG 56307
Query 144165 TGGGAACATCCTATTACAGAAAAACATATAGATACTTTAAAACAT---ATGGGTTTCATA 144221
|||||||| || | || | ||||| || || | | ||| || | || |||| |
Sbjct 56306 TGGGAACACCCGTTAACGTATAAACAGATGGACAAGCTGAAAAATTTCTTTGGATTCAAA 56247
Query 144222 GAAATAGAATGTATAGaaaaaaaaCTAGCCTGTGGAGACGTAGGAAATGGTGCTATGGC 144280
||| | || || || ||| || || || || ||| || |||||||||||||
Sbjct 56246 GAAGTTCCTTGCATCGAGAAAGAATTAATGTGCGGTGACCGTGGTTATGGTGCTATGGC 56188
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 981789850986491
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |