Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20nelsoni_20[genbank_20GCA_5F001447455.1_202015-11-24] 2,969 sequences; 47,436,005 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq827 129 1e-24 seq2465 125 1e-23 seq1187 122 2e-22 seq378 120 6e-22 seq11 120 6e-22 seq2680 118 2e-21 seq1292 98.7 2e-15 seq2706 93.3 8e-14 seq1696 91.5 3e-13 seq401 87.8 4e-12 >seq827 Length=57960 Score = 129 bits (142), Expect = 1e-24 Identities = 113/141 (80%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 |||||||| || || | |||||||||||||| ||||| ||||||||||||||||| || Sbjct 29629 CCAGCAAAAATCAGACGCTGTTGATCTGGAGGAATTCCCTCCTTATCTTGAATCTTCCCT 29688 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || ||||| |||| |||||| ||||| |||||||| || || ||||| || || | Sbjct 29689 TTCACATTCTCAACAGTATCAGATGGTTCCACTTCCAACGTGATGGTCTTCCCAGTTAGG 29748 Query 82791 GTCTTTACAAATATCTGCATT 82811 ||||| ||||| || |||||| Sbjct 29749 GTCTTAACAAAAATTTGCATT 29769 Score = 122 bits (134), Expect = 2e-22 Identities = 115/147 (78%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 82665 TGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATC 82724 || || |||||||| || | | ||||||||| || || ||||| || ||||||||||| Sbjct 30774 TGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATT 30833 Query 82725 TTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCT 82784 || |||| |||||||| || |||||| |||||||||||||||||||| || || || Sbjct 30834 TTGCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCCA 30893 Query 82785 GTCAACGTCTTTACAAATATCTGCATT 82811 || | ||||| || || || |||||| Sbjct 30894 GTAAGGGTCTTAACGAAAATTTGCATT 30920 Score = 122 bits (134), Expect = 2e-22 Identities = 111/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 |||||||| || || | |||||||| || || || ||||| || ||||||||||| | Sbjct 31416 CCAGCAAAAATAAGCCGCTGTTGATCCGGTGGGATGCCTTCTTTGTCTTGAATCTTGCTT 31475 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 |||||||||||||| ||||| || || ||||| | || ||||| || ||||||||| Sbjct 31476 TTTACATTTTCAATTGTATCTGATGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCAAC 31535 Query 82791 GTCTTTACAAATATCTGCAT 82810 || || |||||||||||||| Sbjct 31536 GTTTTCACAAATATCTGCAT 31555 Score = 116 bits (128), Expect = 7e-21 Identities = 112/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || |||||||| || | | ||||||||| || || ||||| || ||||||||||| || Sbjct 30213 TTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATTTTG 30272 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 |||| |||||||| || |||||| ||||||||||||||||||| || || || || Sbjct 30273 CCTTTCACATTTTCTATTGTATCAGATAGTTCTACTTCCAAAGTTATTGTTTTTCCAGTA 30332 Query 82788 AACGTCTTTACAAATATCTGCATT 82811 | ||||| || || || |||||| Sbjct 30333 AGAGTCTTAACGAAAATTTGCATT 30356 Score = 116 bits (128), Expect = 7e-21 Identities = 114/147 (78%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 82665 TGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATC 82724 || || |||||||| || | | ||||||||| || || ||||| || ||||||||||| Sbjct 30492 TGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATT 30551 Query 82725 TTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCT 82784 || |||| |||||||| || |||||| ||||||||||||||||||| || || || Sbjct 30552 TTGCCTTTCACATTTTCTATTGTATCAGATAGTTCTACTTCCAAAGTTATTGTTTTTCCA 30611 Query 82785 GTCAACGTCTTTACAAATATCTGCATT 82811 || | ||||| || || || |||||| Sbjct 30612 GTAAGAGTCTTAACGAAAATTTGCATT 30638 Score = 114 bits (126), Expect = 3e-20 Identities = 110/141 (78%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 |||||||| || | | ||| |||||||| || |||||||| ||||| || || || || Sbjct 55492 CCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCCTGTATTTTCCCT 55551 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || ||||||||||| |||||| ||||| |||||||| || || || ||||| || | Sbjct 55552 TTCACATTTTCAATTGTATCAGATGGTTCCACTTCCAATGTGATGGTTTTGCCAGTGAGG 55611 Query 82791 GTCTTTACAAATATCTGCATT 82811 ||||| ||||| || |||||| Sbjct 55612 GTCTTAACAAAAATTTGCATT 55632 Score = 107 bits (118), Expect = 4e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || |||||||| || || | |||||||| || || ||||| || ||||| ||||| || Sbjct 31745 TTACCAGCAAAAATCAGACGCTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 31804 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 |||| ||||||||||| | || ||||| ||||||| ||| || || || || ||| Sbjct 31805 CCTTTCACATTTTCAATTGAGTCTAAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 31864 Query 82788 AACGTCTTTACAAATATCTGCATT 82811 | || || ||||||||||||||| Sbjct 31865 AGAGTTTTCACAAATATCTGCATT 31888 >seq2465 Length=325902 Score = 125 bits (138), Expect = 1e-23 Identities = 114/141 (81%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 |||||||| || | || ||| ||||| || || || ||||||||||||||||| ||| || Sbjct 17203 CCAGCAAATATCAATCGTTGCTGATCAGGCGGAATGCCTTCCTTATCTTGAAT-TTTACT 17261 Query 82731 TTT-ACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAA 82789 ||| |||||||||||||||||| || ||||||||||| || || || || || || || Sbjct 17262 TTTCACATTTTCAATCGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTAA 17321 Query 82790 CGTCTTTACAAATATCTGCAT 82810 || || ||||| |||||||| Sbjct 17322 TGTTTTCACAAAAATCTGCAT 17342 Score = 116 bits (128), Expect = 7e-21 Identities = 116/148 (78%), Gaps = 2/148 (1%) Strand=Plus/Plus Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || || |||||||||| |||||| ||||| ||||| || ||||||||||| ||||| ||| Sbjct 17878 TTACCTGCAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAAT-TTT 17936 Query 82728 GCTTTT-ACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGT 82786 ||||| |||||||| || || || ||||| ||||| | ||||| || || || || Sbjct 17937 ACTTTTAACATTTTCGATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAGT 17996 Query 82787 CAACGTCTTTACAAATATCTGCATTATT 82814 | ||||| || ||||||||||| ||| Sbjct 17997 AAGTGTCTTCACGAATATCTGCATAATT 18024 Score = 111 bits (122), Expect = 3e-19 Identities = 113/145 (78%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || |||||||| || | || || ||||| || || || ||||| || |||||||| ||| Sbjct 16914 TTACCAGCAAATATCAATCGCTGCTGATCAGGTGGAATGCCTTCTTTGTCTTGAAT-TTT 16972 Query 82728 GCTTTT-ACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGT 82786 |||||| |||||||||||||| || ||| ||||| ||||| || || || || || || Sbjct 16973 GCTTTTCACATTTTCAATCGTGTCCGAAGGCTCTACCTCCAATGTGATTGTTTTTCCAGT 17032 Query 82787 CAACGTCTTTACAAATATCTGCATT 82811 || || || ||||| ||||||||| Sbjct 17033 TAATGTTTTCACAAAAATCTGCATT 17057 >seq1187 Length=25466 Score = 122 bits (134), Expect = 2e-22 Identities = 111/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 |||||||| || || | |||||||| || || || ||||| || ||||||||||| | Sbjct 20708 CCAGCAAAAATAAGCCGCTGTTGATCCGGTGGGATGCCTTCTTTGTCTTGAATCTTGCTT 20649 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 |||||||||||||| ||||| || || ||||| | || ||||| || ||||||||| Sbjct 20648 TTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCAAC 20589 Query 82791 GTCTTTACAAATATCTGCAT 82810 || || |||||||||||||| Sbjct 20588 GTTTTCACAAATATCTGCAT 20569 Score = 120 bits (132), Expect = 6e-22 Identities = 111/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 |||||||| || || | ||| |||||||| || |||||||| ||||| || || || || Sbjct 20990 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCCTGTATTTTCCCT 20931 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || ||||||||||| |||||| ||||| |||||||| || || || ||||| || | Sbjct 20930 TTCACATTTTCAATTGTATCAGATGGTTCCACTTCCAATGTGATGGTTTTGCCAGTGAGG 20871 Query 82791 GTCTTTACAAATATCTGCATT 82811 ||||| ||||| || |||||| Sbjct 20870 GTCTTAACAAAAATTTGCATT 20850 Score = 120 bits (132), Expect = 6e-22 Identities = 111/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 |||||||| || || | ||| |||||||| || |||||||| ||||| || || || || Sbjct 21273 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCCTGTATTTTCCCT 21214 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || ||||||||||| |||||| ||||| |||||||| || || || ||||| || | Sbjct 21213 TTCACATTTTCAATTGTATCAGATGGTTCCACTTCCAATGTGATGGTTTTGCCAGTGAGG 21154 Query 82791 GTCTTTACAAATATCTGCATT 82811 ||||| ||||| || |||||| Sbjct 21153 GTCTTAACAAAAATTTGCATT 21133 Score = 120 bits (132), Expect = 6e-22 Identities = 111/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 |||||||| || || | ||| |||||||| || |||||||| ||||| || || || || Sbjct 21556 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCCTGTATTTTCCCT 21497 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || ||||||||||| |||||| ||||| |||||||| || || || ||||| || | Sbjct 21496 TTCACATTTTCAATTGTATCAGATGGTTCCACTTCCAATGTGATGGTTTTGCCAGTGAGG 21437 Query 82791 GTCTTTACAAATATCTGCATT 82811 ||||| ||||| || |||||| Sbjct 21436 GTCTTAACAAAAATTTGCATT 21416 Score = 120 bits (132), Expect = 6e-22 Identities = 111/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 |||||||| || | | ||||||||| || || |||||||||||||| || || || || Sbjct 21839 CCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTCCCT 21780 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || ||||||||||| |||||| ||||| |||||||| || || || ||||| || | Sbjct 21779 TTCACATTTTCAATTGTATCAGATGGTTCCACTTCCAATGTGATGGTTTTGCCAGTGAGG 21720 Query 82791 GTCTTTACAAATATCTGCATT 82811 ||||| ||||| || |||||| Sbjct 21719 GTCTTAACAAAAATTTGCATT 21699 Score = 120 bits (132), Expect = 6e-22 Identities = 111/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 |||||||| || || | ||| |||||||| || |||||||||||||| || || || || Sbjct 22124 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCCTTATCCTGTATTTTGCCT 22065 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 |||||||| || || |||||| |||||||||||||| ||||| || || || || | Sbjct 22064 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAATGTTATTGTTTTTCCAGTAAGA 22005 Query 82791 GTCTTTACAAATATCTGCATT 82811 ||||| || || || |||||| Sbjct 22004 GTCTTAACGAAAATTTGCATT 21984 Score = 114 bits (126), Expect = 3e-20 Identities = 110/141 (78%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 |||||||| || | | ||| |||||||| || |||||||| ||||| || || || || Sbjct 22407 CCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCCTGTATTTTCCCT 22348 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || ||||||||||| |||||| ||||| |||||||| || || || ||||| || | Sbjct 22347 TTCACATTTTCAATTGTATCAGATGGTTCCACTTCCAATGTGATGGTTTTGCCAGTGAGG 22288 Query 82791 GTCTTTACAAATATCTGCATT 82811 ||||| ||||| || |||||| Sbjct 22287 GTCTTAACAAAAATTTGCATT 22267 Score = 102 bits (112), Expect = 2e-16 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || |||||||| || || | ||||||||| || || ||||| || ||||| ||||| || Sbjct 20379 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 20320 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 | || ||||||||||| || || || || ||||||| || || || || || ||| Sbjct 20319 CCCTTCACATTTTCAATGGTGTCTGAGGGCTCCACTTCCAGTGTAATGGTTTTCCCAGTC 20260 Query 82788 AACGTCTTTACAAATATCTGCATT 82811 | || || ||||||||||||||| Sbjct 20259 AGAGTTTTGACAAATATCTGCATT 20236 >seq378 Length=398 Score = 120 bits (132), Expect = 6e-22 Identities = 111/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 |||||||| || | | ||| |||||||| || |||||||||||||| || || || || Sbjct 254 CCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCCTTATCCTGTATTTTGCCT 195 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 |||||||| || || |||||| |||||||||||||| || ||||| ||||| || | Sbjct 194 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAAGA 135 Query 82791 GTCTTTACAAATATCTGCATT 82811 ||||| || || || |||||| Sbjct 134 GTCTTAACGAAAATTTGCATT 114 >seq11 Length=460 Score = 120 bits (132), Expect = 6e-22 Identities = 113/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || |||||||| || | | ||||||||| || || |||||||||||||| || || || Sbjct 202 TTACCAGCAAATATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTG 143 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 |||||||||| || || |||||| |||||||||||||| || ||||| ||||| || Sbjct 142 CCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTA 83 Query 82788 AACGTCTTTACAAATATCTGCATT 82811 | ||||| || || || |||||| Sbjct 82 AGAGTCTTAACGAAAATTTGCATT 59 Score = 98.7 bits (108), Expect = 2e-15 Identities = 90/114 (79%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 82698 GGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT 82757 || || |||||||||||||| || || || |||||||||| || || |||||| ||| Sbjct 460 GGTGGAATTCCTTCCTTATCCTGTATTTTGCCTTTTACATTCTCTATTGTATCAGATGGT 401 Query 82758 TCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 ||||||||||| || ||||| ||||| || | ||||| || || || |||||| Sbjct 400 TCTACTTCCAAGGTGATCGTTTTGCCGGTAAGAGTCTTAACGAAAATTTGCATT 347 >seq2680 Length=639 Score = 118 bits (130), Expect = 2e-21 Identities = 158/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || || | ||| || ||||| || ||||| ||||| || || | || | | || Sbjct 593 ACGGAGGACAAGGTGAAGGGTAGACTCCTTCTGGATATTGTAGTCTGCCAGGGTACGCCC 534 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 || || || || || || |||||||| || || || || ||||| || || || ||||| Sbjct 533 ATCCTCGAGCTGCTTGCCGGCAAAGATAAGCCTCTGCTGGTCTGGTGGAATCCCCTCCTT 474 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTACTTCCAAAGTTA 82773 ||||||||||| || || ||||| ||||| || || | || | || || || | || | Sbjct 473 GTCTTGAATCTTGGCCTTCACATTGTCAATGGTGTC-TGAGCTCTCCACCTCAAGGGTGA 415 Query 82774 TCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | ||||| ||||| | ||||| ||||| |||||||| Sbjct 414 TGGTCTTCCCTGTAAGAGTCTTGACAAAAATCTGCAT 378 >seq1292 Length=279 Score = 98.7 bits (108), Expect = 2e-15 Identities = 123/169 (73%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| || || || || || || || || ||||| || || ||||||| Sbjct 93 TACCACCGCGAAGACGGAGCACCAAATGGAGGGTTGACTCCTTCTGAATGTTGTAATCAG 152 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | |||||||| || || || ||||| || ||||| | || || ||||| || | Sbjct 153 CCAAGGTCCTACCGTCCTCGAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGATCCGGTG 212 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATC 82750 | || ||||||||||| || ||||| || || || || ||||| ||||| Sbjct 213 GGATCCCTTCCTTATCCTGGATCTTGGCCTTGACGTTATCAATTGTATC 261 >seq2706 Length=224770 Score = 93.3 bits (102), Expect = 8e-14 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 82707 CCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCC 82766 |||||||| || ||||| || || || ||||| | ||| |||||| ||| ||||||||| Sbjct 73251 CCTTCCTTGTCCTGAATTTTAGCCTTCACATTCTGAATTGTATCAGAAGGCTCTACTTCC 73192 Query 82767 AAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || ||||| ||||| | || || |||||||| ||||| Sbjct 73191 AAAGTGATGGTCTTTCCTGTTAGAGTTTTCACAAATATTTGCAT 73148 >seq1696 Length=245 Score = 91.5 bits (100), Expect = 3e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || |||||||| || | | ||||||||| || || |||||||| ||||| || || || Sbjct 113 TTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCTTTATCCTGTATTTTG 54 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTT 82780 | |||||||| || || |||||| |||||||||||||| || ||||| || Sbjct 53 CCCTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTT 1 >seq401 Length=108154 Score = 87.8 bits (96), Expect = 4e-12 Identities = 199/299 (67%), Gaps = 3/299 (1%) Strand=Plus/Minus Query 143985 GATCCAGTCTTGCATATAGAACTTAGGAGATGGGCTGATGTTTTTATTATAGCGCCCTTA 144044 ||||| || | || ||||||| || ||||||| || |||| | || ||||| || Sbjct 56486 GATCCTGTTCTTCACGTAGAACTAAGACGATGGGCAGACATTTTGGTGATTGCGCCGTTG 56427 Query 144045 ACAGCAAATACGTTAGCAAAAATAGCCAATGGTATATGCGATAATTTACTAACATCTATA 144104 |||||| || | || ||||| ||||||| || || |||||||| ||||| | | Sbjct 56426 GACGCAAATTCGATGGCGAAAATTTCCAATGGAATTTGTGATAATTTGTTAACAAGTTTG 56367 Query 144105 GTAAGAGCCTGGGATATAAATAAACCTCTTATTTTTTGCCCCGCTATGAATACCCTTATG 144164 || |||| |||||| || || | | | || ||||| ||||||||| ||| Sbjct 56366 GTTCGAGCTTGGGATGGTGCAAAGCCGGTCTATATATGTCCCGCAATGAATACCTACATG 56307 Query 144165 TGGGAACATCCTATTACAGAAAAACATATAGATACTTTAAAACAT---ATGGGTTTCATA 144221 |||||||| || | || | ||||| || || | | ||| || | || |||| | Sbjct 56306 TGGGAACACCCGTTAACGTATAAACAGATGGACAAGCTGAAAAATTTCTTTGGATTCAAA 56247 Query 144222 GAAATAGAATGTATAGaaaaaaaaCTAGCCTGTGGAGACGTAGGAAATGGTGCTATGGC 144280 ||| | || || || ||| || || || || ||| || ||||||||||||| Sbjct 56246 GAAGTTCCTTGCATCGAGAAAGAATTAATGTGCGGTGACCGTGGTTATGGTGCTATGGC 56188 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981789850986491