Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20nelsoni_20[genbank_20GCA_5F001447455.1_202015-11-24] 2,969 sequences; 47,436,005 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq401 91.5 3e-13 >seq401 Length=108154 Score = 91.5 bits (100), Expect = 3e-13 Identities = 201/299 (67%), Gaps = 3/299 (1%) Strand=Plus/Minus Query 143004 GATCCCGTCTTGCATATAGAACTTAGGAGATGGGCGGATGTTTTTCTTATAGCGCCCTTA 143063 ||||| || | || ||||||| || ||||||| || |||| | || ||||| || Sbjct 56486 GATCCTGTTCTTCACGTAGAACTAAGACGATGGGCAGACATTTTGGTGATTGCGCCGTTG 56427 Query 143064 ACGGCAAATACGTTAGCAAAAATAGCCAACGGTATATGCGATAATTTACTAACATCTATA 143123 |||||| || | || ||||| |||| || || || |||||||| ||||| | | Sbjct 56426 GACGCAAATTCGATGGCGAAAATTTCCAATGGAATTTGTGATAATTTGTTAACAAGTTTG 56367 Query 143124 GTAAGAGCCTGGGATATAAATAAACCTCTTATTTTTTGTCCCGCTATGAATAGCCTTATG 143183 || |||| |||||| || || | | | |||||||| ||||||| | ||| Sbjct 56366 GTTCGAGCTTGGGATGGTGCAAAGCCGGTCTATATATGTCCCGCAATGAATACCTACATG 56307 Query 143184 TGGGAACATCCTATTACAGAAAAACATAT--AGATGCTTTAAAACAT-ATGGGTTTCATA 143240 |||||||| || | || | ||||| || | | ||| |||| | | || |||| | Sbjct 56306 TGGGAACACCCGTTAACGTATAAACAGATGGACAAGCTGAAAAATTTCTTTGGATTCAAA 56247 Query 143241 GAAATAGAATGCATAGaaaaaaaaCTAGCCTGCGGAGACATAGGAAATGGTGCTATGGC 143299 ||| | ||||| || ||| || || ||||| ||| || ||||||||||||| Sbjct 56246 GAAGTTCCTTGCATCGAGAAAGAATTAATGTGCGGTGACCGTGGTTATGGTGCTATGGC 56188 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903377672151840