Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20nelsoni_20[genbank_20GCA_5F001447455.1_202015-11-24]
2,969 sequences; 47,436,005 total letters
Query= NC_024450.1
Length=204054
Score E
Sequences producing significant alignments: (Bits) Value
seq2725 86.0 8e-12
seq2415 86.0 8e-12
seq1838 86.0 8e-12
seq380 86.0 8e-12
>seq2725
Length=220032
Score = 86.0 bits (94), Expect = 8e-12
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
|||||| |||||||||||| |||||||||| ||||| | |||| |||| |||||||||||
Sbjct 42317 TCCTCGGTAGTATAGTGGTGAGTATTCCCGCCTGTCACGCGGGCGACCCGGGTTCGATTC 42376
Query 8718 CCCGACGAGGAG 8729
|| | || ||||
Sbjct 42377 CCGGCCGGGGAG 42388
>seq2415
Length=845780
Score = 86.0 bits (94), Expect = 8e-12
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
|||||| |||||||||||| |||||||||| ||||| | |||| |||| |||||||||||
Sbjct 602455 TCCTCGGTAGTATAGTGGTGAGTATTCCCGCCTGTCACGCGGGCGACCCGGGTTCGATTC 602514
Query 8718 CCCGACGAGGAG 8729
|| | || ||||
Sbjct 602515 CCGGCCGGGGAG 602526
>seq1838
Length=927364
Score = 86.0 bits (94), Expect = 8e-12
Identities = 64/75 (85%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
|||||| |||||||||||| |||||||||| ||||| | |||| |||| |||||||||||
Sbjct 394889 TCCTCGGTAGTATAGTGGTGAGTATTCCCGCCTGTCACGCGGGCGACCCGGGTTCGATTC 394830
Query 8718 CCCGACGAGGAGCAG 8732
|| | || |||| ||
Sbjct 394829 CCGGCCGGGGAGAAG 394815
>seq380
Length=586333
Score = 86.0 bits (94), Expect = 8e-12
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
|||||| |||||||||||| |||||||||| ||||| | |||| |||| |||||||||||
Sbjct 184601 TCCTCGGTAGTATAGTGGTGAGTATTCCCGCCTGTCACGCGGGCGACCCGGGTTCGATTC 184542
Query 8718 CCCGACGAGGAG 8729
|| | || ||||
Sbjct 184541 CCGGCCGGGGAG 184530
Score = 82.4 bits (90), Expect = 1e-10
Identities = 64/75 (85%), Gaps = 1/75 (1%)
Strand=Plus/Minus
Query 11727 CAGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGA 11785
||||||||| |||||||||||| ||||| |||| ||||| | |||| |||| ||||||||
Sbjct 184604 CAGTCCTCGGTAGTATAGTGGTGAGTATTCCCGCCTGTCACGCGGGCGACCCGGGTTCGA 184545
Query 11786 TTCCCCGACGAGGAG 11800
||||| | || ||||
Sbjct 184544 TTCCCGGCCGGGGAG 184530
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 652820571297360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |