Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20nelsoni_20[genbank_20GCA_5F001447455.1_202015-11-24] 2,969 sequences; 47,436,005 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq2680 114 1e-20 seq2603 102 8e-17 seq1292 84.2 2e-11 >seq2680 Length=639 Score = 114 bits (126), Expect = 1e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||| ||||| ||||| |||||||| || ||| || | ||||||||||||||||| Sbjct 575 GGTAGACTCCTTCTGGATATTGTAGTCTGCCAGGGTACGCCCATCCTCGAGCTGCTTGCC 516 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || |||| ||||||||| || || || || |||||||| ||||| ||| Sbjct 515 GGCAAAGATAAGCCTCTGCTGGTCTGGTGGAATCCCCTCCTTGTCTTGAATCTTGGCCTT 456 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | |||| ||||| | | |||||| || | ||||| ||| || || || ||||| Sbjct 455 CACATTGTCAATGGTGTCTGAGCTCTCCACCTCAAGGGTGATGGTCTTCCCTGTAAGAGT 396 Query 133643 TTTTACGAAAATCTGCAT 133660 || || ||||||||||| Sbjct 395 CTTGACAAAAATCTGCAT 378 >seq2603 Length=690759 Score = 102 bits (112), Expect = 8e-17 Identities = 167/238 (70%), Gaps = 6/238 (3%) Strand=Plus/Plus Query 120665 CCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGGCCGGGCATGATGCCTTTCGTCT 120724 ||||||| || || |||||||||||||| ||||||| |||||||| | ||| | | | Sbjct 457010 CCTCGTCACGAGAGATCAGCTCGTTGCTGAACGTCAAACCGGGCATCAGGCCGCGCTTTT 457069 Query 120725 TGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAGAACACGCCCTCCACGATGGCAAAGG 120784 | | |||| || | || |||||||| |||||||| | ||| || || || || | Sbjct 457070 TCAACCAGAAAATTGACGCGAAGCTGCCGGAAAAGAAAATGCCTTCGACAGCTGCGAACG 457129 Query 120785 CGACCATGCGCTCGGCCAACGTCGCCGTCTTGCTGT---CGATCCACTTCATGGCCCACT 120841 |||||| || ||| ||| | | || || | || ||||||| || ||||| | Sbjct 457130 CGACCAAACGTTCG--CAAAAT-GGCGACTGACGGTCACCGATCCAGCGCAAAGCCCAGT 457186 Query 120842 CGGCCTTTTTGCGCACGCACGGCATCCGCTCGAACGCGTTCAGCAGCATGTCGCGCTC 120899 | || ||||| ||||||||| || ||||| |||||| | ||| | || ||||| Sbjct 457187 CTGCTTTTTTCTTCACGCACGGAATGGTCTCGATCGCGTTGAACAGAAAATCACGCTC 457244 >seq1292 Length=279 Score = 84.2 bits (92), Expect = 2e-11 Identities = 115/161 (71%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 ||||| | ||| ||||| ||||| || |||||||| ||| || |||||||||| Sbjct 116 AAATGGAGGGTTGACTCCTTCTGAATGTTGTAATCAGCCAAGGTCCTACCGTCCTCGAGC 175 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 ||||| || ||| | || | || |||||| || || ||||| |||||||| || |||| Sbjct 176 TGCTTTCCGGCGAAGATCAACCTCTGCTGATCCGGTGGGATCCCTTCCTTATCCTGGATC 235 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTC 133615 || ||||| | |||| || |||| | ||| || || Sbjct 236 TTGGCCTTGACGTTATCAATTGTATCGGAGCTCTCAACCTC 276 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483402859045560