Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20nelsoni_20[genbank_20GCA_5F001447455.1_202015-11-24] 2,969 sequences; 47,436,005 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq2810 93.3 1e-13 >seq2810 Length=199988 Score = 93.3 bits (102), Expect = 1e-13 Identities = 172/249 (69%), Gaps = 4/249 (2%) Strand=Plus/Minus Query 110743 AGAGAAATGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCT 110802 ||||| ||| | ||||| ||||| | ||||||||||| |||| |||||||| || Sbjct 183716 AGAGACCTGGGGCGTTTGCGGTCTATTTGGAACCTTGGCACGCAGACATATTTGATTTTC 183657 Query 110803 TAGAACTTCGTAAAA-ATCA-AGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGC 110860 | || || |||| | || ||| | |||||| | |||| || ||||| ||||| || Sbjct 183656 TTGA--CGCGAAAAAGAACACAGGCGTCGAAGAAAACCGAGCCCGAGATTTGTTTTACGC 183599 Query 110861 AATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTAT 110920 | ||||| | ||| |||||||||| || || ||| | || ||||| || || Sbjct 183598 CCTCTGGATACCTGATCTATTCATGAAGCGCATTGAAGCCGACGGAGATTGGTCACTGAT 183539 Query 110921 GTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTA 110980 ||| |||||| | |||||| | | ||| | | || | ||||||||| | | || Sbjct 183538 GTGCCCTCATGAATGTCCTGGATTGGCGGATTTGTGGGGCGATGAGTTTGAAAAATTATA 183479 Query 110981 CGAAAAATA 110989 |||||| || Sbjct 183478 CGAAAAGTA 183470 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186767653270209