Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20nelsoni_20[genbank_20GCA_5F001447455.1_202015-11-24]
2,969 sequences; 47,436,005 total letters
Query= NC_024697.1
Length=370920
Score E
Sequences producing significant alignments: (Bits) Value
seq2810 93.3 1e-13
>seq2810
Length=199988
Score = 93.3 bits (102), Expect = 1e-13
Identities = 172/249 (69%), Gaps = 4/249 (2%)
Strand=Plus/Minus
Query 110743 AGAGAAATGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCT 110802
||||| ||| | ||||| ||||| | ||||||||||| |||| |||||||| ||
Sbjct 183716 AGAGACCTGGGGCGTTTGCGGTCTATTTGGAACCTTGGCACGCAGACATATTTGATTTTC 183657
Query 110803 TAGAACTTCGTAAAA-ATCA-AGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGC 110860
| || || |||| | || ||| | |||||| | |||| || ||||| ||||| ||
Sbjct 183656 TTGA--CGCGAAAAAGAACACAGGCGTCGAAGAAAACCGAGCCCGAGATTTGTTTTACGC 183599
Query 110861 AATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTAT 110920
| ||||| | ||| |||||||||| || || ||| | || ||||| || ||
Sbjct 183598 CCTCTGGATACCTGATCTATTCATGAAGCGCATTGAAGCCGACGGAGATTGGTCACTGAT 183539
Query 110921 GTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTA 110980
||| |||||| | |||||| | | ||| | | || | ||||||||| | | ||
Sbjct 183538 GTGCCCTCATGAATGTCCTGGATTGGCGGATTTGTGGGGCGATGAGTTTGAAAAATTATA 183479
Query 110981 CGAAAAATA 110989
|||||| ||
Sbjct 183478 CGAAAAGTA 183470
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1186767653270209
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |