Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20nelsoni_20[genbank_20GCA_5F001447455.1_202015-11-24] 2,969 sequences; 47,436,005 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq2680 86.0 4e-12 >seq2680 Length=639 Score = 86.0 bits (94), Expect = 4e-12 Identities = 161/233 (69%), Gaps = 8/233 (3%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | ||||||||| || ||| || || || |||||||| || | Sbjct 377 ACCACCACGAAGACGAAGCACCAAATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCTGC 318 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || || | || || | || ||||||||||| || | | |||||| ||| | || Sbjct 317 CAGGGTACGGCCATCCTCAAGCTGCTTTCCGGCAAAGATAAGCCTCTGCTGGTCTGGTGG 258 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATT 33697 | ||| || ||||| ||||| ||| |||| || | |||||| ||| | Sbjct 257 GATACCCTCCTTGTCCTGGATTTTAGCCTTC-ACATTATCGATGGTGTCTGAGCT---CT 202 Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 |||| || | ||||| || || || || || || || ||||||||||||||| Sbjct 201 CCACCTCCAAGGTGATGGTCTTTCCGGTCAAGGTCTTGACAAAGATCTGCATA 149 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328692105948480