Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20nelsoni_20[genbank_20GCA_5F001447455.1_202015-11-24] 2,969 sequences; 47,436,005 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq2680 120 7e-22 >seq2680 Length=639 Score = 120 bits (132), Expect = 7e-22 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| || || ||||| || || ||||| | || ||||| || || ||| Sbjct 381 CAGATTTTTGTCAAGACTCTTACAGGGAAGACCATCACCCTTGAGGTGGAGAGCTCAGAC 440 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| ||||||||||| || || || ||| || ||| || Sbjct 441 ACCATTGACAATGTGAAGGCCAAGATTCAAGACAAGGAGGGGATTCCACCAGACCAGCAG 500 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || |||||||| ||||| |||||| | || ||||| | || |||| || ||||| || Sbjct 501 AGGCTTATCTTTGCCGGCAAGCAGCTCGAGGATGGGCGTACCCTGGCAGACTACAATATC 560 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| |||||||| ||||||||||| Sbjct 561 CAGAAGGAGTCTACCCTTCACCTTGT 586 Score = 100 bits (110), Expect = 7e-16 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| || | || ||||| || ||||| ||||| ||||| || || ||| Sbjct 153 CAGATCTTTGTCAAGACCTTGACCGGAAAGACCATCACCTTGGAGGTGGAGAGCTCAGAC 212 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| || || || || || || || || || ||| || Sbjct 213 ACCATCGATAATGTGAAGGCTAAAATCCAGGACAAGGAGGGTATCCCACCAGACCAGCAG 272 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || |||||||| |||||||||||| | || ||||| | || |||| || |||||| || Sbjct 273 AGGCTTATCTTTGCCGGAAAGCAGCTTGAGGATGGCCGTACCCTGGCAGACTACAACATC 332 Query 206353 CAGAAAGAGTCTACTCTTCA 206372 ||||| || || || ||||| Sbjct 333 CAGAAGGAATCCACCCTTCA 352 Score = 91.5 bits (100), Expect = 3e-13 Identities = 71/85 (84%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823 ||||||||||| |||||||| ||||||| ||| ||||| |||| || | ||||| || Sbjct 586 ACAAGGTGAAGGGTAGACTCCTTCTGGATATTGTAGTCTGCCAGGGTACGCCCATCCTCG 527 Query 204824 AGCTGCTTTCCGGCGAAGATAAGCC 204848 |||||||| ||||| |||||||||| Sbjct 526 AGCTGCTTGCCGGCAAAGATAAGCC 502 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181775843167449