Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20nelsoni_20[genbank_20GCA_5F001447455.1_202015-11-24]
2,969 sequences; 47,436,005 total letters
Query= NC_025412.1
Length=369360
Score E
Sequences producing significant alignments: (Bits) Value
seq2680 120 7e-22
>seq2680
Length=639
Score = 120 bits (132), Expect = 7e-22
Identities = 150/206 (73%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232
||||| ||| ||| || || ||||| || || ||||| | || ||||| || || |||
Sbjct 381 CAGATTTTTGTCAAGACTCTTACAGGGAAGACCATCACCCTTGAGGTGGAGAGCTCAGAC 440
Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292
|| | || || ||| ||||||||||| || || || ||| || ||| ||
Sbjct 441 ACCATTGACAATGTGAAGGCCAAGATTCAAGACAAGGAGGGGATTCCACCAGACCAGCAG 500
Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352
|| |||||||| ||||| |||||| | || ||||| | || |||| || ||||| ||
Sbjct 501 AGGCTTATCTTTGCCGGCAAGCAGCTCGAGGATGGGCGTACCCTGGCAGACTACAATATC 560
Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378
||||| |||||||| |||||||||||
Sbjct 561 CAGAAGGAGTCTACCCTTCACCTTGT 586
Score = 100 bits (110), Expect = 7e-16
Identities = 142/200 (71%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232
||||| ||| ||| || | || ||||| || ||||| ||||| ||||| || || |||
Sbjct 153 CAGATCTTTGTCAAGACCTTGACCGGAAAGACCATCACCTTGGAGGTGGAGAGCTCAGAC 212
Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292
|| |||| || ||| || || || || || || || || || ||| ||
Sbjct 213 ACCATCGATAATGTGAAGGCTAAAATCCAGGACAAGGAGGGTATCCCACCAGACCAGCAG 272
Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352
|| |||||||| |||||||||||| | || ||||| | || |||| || |||||| ||
Sbjct 273 AGGCTTATCTTTGCCGGAAAGCAGCTTGAGGATGGCCGTACCCTGGCAGACTACAACATC 332
Query 206353 CAGAAAGAGTCTACTCTTCA 206372
||||| || || || |||||
Sbjct 333 CAGAAGGAATCCACCCTTCA 352
Score = 91.5 bits (100), Expect = 3e-13
Identities = 71/85 (84%), Gaps = 0/85 (0%)
Strand=Plus/Minus
Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823
||||||||||| |||||||| ||||||| ||| ||||| |||| || | ||||| ||
Sbjct 586 ACAAGGTGAAGGGTAGACTCCTTCTGGATATTGTAGTCTGCCAGGGTACGCCCATCCTCG 527
Query 204824 AGCTGCTTTCCGGCGAAGATAAGCC 204848
|||||||| ||||| ||||||||||
Sbjct 526 AGCTGCTTGCCGGCAAAGATAAGCC 502
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1181775843167449
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |