Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20nelsoni_20[genbank_20GCA_5F001447455.1_202015-11-24]
2,969 sequences; 47,436,005 total letters
Query= NC_026268.1
Length=139132
Score E
Sequences producing significant alignments: (Bits) Value
seq2810 87.8 2e-12
>seq2810
Length=199988
Score = 87.8 bits (96), Expect = 2e-12
Identities = 151/217 (70%), Gaps = 2/217 (1%)
Strand=Plus/Plus
Query 136638 CACGGTGAATTGGATTGTATTCGCGGCAGGTTTAGTTCTCAGATAGTACATGCCCGTCTT 136697
|||||||||||| || | || | || || || ||||||| ||||||||| || || ||
Sbjct 181999 CACGGTGAATTGAATAGCCGTCACTGCCGGCTTGGTTCTCAAATAGTACATCCCAGTTTT 182058
Query 136698 TAAACCCTTCTCCCAGGAATAATTATGTATAGATGACAAAATTTTATAGCTCGGATCGGC 136757
| |||||||| |||| || ||| || |||| ||| | ||| |||| |||||
Sbjct 182059 CAGACCCTTCTTCCAGCCGTAGAAATGCATTGATGTCAATTTAGCATAATTCGGCTCGGC 182118
Query 136758 CACGAAAAGATTTAGCGATTGGCTCTGATCGATGTAAGGTCCGCGGTCTGCGGCCATGTT 136817
| | || ||| | ||| ||| ||||| ||| | | ||| | || ||||||||||
Sbjct 182119 TATGTGAATATTCAACGACTGGGATTGATCAATGAATGCTCCCCTTTCGGCGGCCATGTC 182178
Query 136818 CAATA-GTACTTTTTGCTTAATTTCCCAAGCGGTTTT 136853
| | | || ||||| |||||||||| | || ||
Sbjct 182179 TATGACGCAC-TTTTGGGAAATTTCCCAAACCGTCTT 182214
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445077881434080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |