Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20nelsoni_20[genbank_20GCA_5F001447455.1_202015-11-24] 2,969 sequences; 47,436,005 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq2810 87.8 2e-12 >seq2810 Length=199988 Score = 87.8 bits (96), Expect = 2e-12 Identities = 151/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 136638 CACGGTGAATTGGATTGTATTCGCGGCAGGTTTAGTTCTCAGATAGTACATGCCCGTCTT 136697 |||||||||||| || | || | || || || ||||||| ||||||||| || || || Sbjct 181999 CACGGTGAATTGAATAGCCGTCACTGCCGGCTTGGTTCTCAAATAGTACATCCCAGTTTT 182058 Query 136698 TAAACCCTTCTCCCAGGAATAATTATGTATAGATGACAAAATTTTATAGCTCGGATCGGC 136757 | |||||||| |||| || ||| || |||| ||| | ||| |||| ||||| Sbjct 182059 CAGACCCTTCTTCCAGCCGTAGAAATGCATTGATGTCAATTTAGCATAATTCGGCTCGGC 182118 Query 136758 CACGAAAAGATTTAGCGATTGGCTCTGATCGATGTAAGGTCCGCGGTCTGCGGCCATGTT 136817 | | || ||| | ||| ||| ||||| ||| | | ||| | || |||||||||| Sbjct 182119 TATGTGAATATTCAACGACTGGGATTGATCAATGAATGCTCCCCTTTCGGCGGCCATGTC 182178 Query 136818 CAATA-GTACTTTTTGCTTAATTTCCCAAGCGGTTTT 136853 | | | || ||||| |||||||||| | || || Sbjct 182179 TATGACGCAC-TTTTGGGAAATTTCCCAAACCGTCTT 182214 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445077881434080