Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20nelsoni_20[genbank_20GCA_5F001447455.1_202015-11-24]
2,969 sequences; 47,436,005 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq2603 136 6e-26
>seq2603
Length=690759
Score = 136 bits (150), Expect = 6e-26
Identities = 238/338 (70%), Gaps = 10/338 (3%)
Strand=Plus/Minus
Query 1455979 GAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTAC 1456038
||||||||||| || || || ||||| || ||||| ||||| |||| || |||| |||
Sbjct 457340 GAGGCACGTTTTTTCTATGGCTTCCAAATTGCCATAGAAAATGTCCATTCCGAAATGTAC 457281
Query 1456039 TCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCC 1456098
||| |||||||||||||| || || ||||| ||| || || || |||
Sbjct 457280 AGCCTCTTGATCGACACCTACATCCGTGATCCGGTGGAGCGTGATTTTCTGTTCAACGCG 457221
Query 1456099 ATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAG 1456158
||||| || | |||| |||| |||||| || |||||||| || ||||| |
Sbjct 457220 ATCGAGACCATTCCGTGCGTGAAGAAAAAAGCAGACTGGGCTTTGCGCTGGAT---CGGT 457164
Query 1456159 GAGGGCC--TCGACACTTTGCCGAGCGGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTT 1456215
|| | | ||| || |||| ||| || | |||| || || || ||||| ||||| ||
Sbjct 457163 GACCGTCAGTCGCCATTTTG-CGAACGTTTGGTCGCGTTCGCAGCTGTCGAAGGCATTTT 457105
Query 1456216 TTTCTCGGGCAGTTTCTGCG-CCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTC 1456274
|| || ||||| ||| ||| | || || ||| | || ||||||||||| |||||||||
Sbjct 457104 CTTTTCCGGCAGCTTC-GCGTCAATTTTCTGGTTGAAAAAGCGCGGCCTGATGCCCGGT- 457047
Query 1456275 TTCTGCTTTAGCAACGAATTTATCAGTCGCGACGAAGT 1456312
|| || |||||||| | ||| ||| ||||| ||
Sbjct 457046 TTGACGTTCAGCAACGAGCTGATCTCTCGTGACGAGGT 457009
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7177524834492978
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |