Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20nelsoni_20[genbank_20GCA_5F001447455.1_202015-11-24] 2,969 sequences; 47,436,005 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq2465 93.3 4e-14 seq1292 93.3 4e-14 seq2680 87.8 2e-12 >seq2465 Length=325902 Score = 93.3 bits (102), Expect = 4e-14 Identities = 111/147 (76%), Gaps = 4/147 (3%) Strand=Plus/Plus Query 35594 TTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTT 35653 ||||| ||||||||||| |||||||| || | |||| || || |||| | ||| ||| Sbjct 16914 TTACCAGCAAATATCAATCGCTGCTGATCAGGTGGAATGCCTTCTTTGT-CTTGA-ATTT 16971 Query 35654 TGC--TTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCG 35711 ||| |||| | || | | |||||| | || ||||||| ||||| ||||| || | Sbjct 16972 TGCTTTTCACATTTTCAATCGTGTCCGAAGGCTCTACCTCCAATGTGATTGTTTTTCCAG 17031 Query 35712 TCAAAGTTTTCACAAATATCTGCATTC 35738 | || ||||||||||| |||||||||| Sbjct 17032 TTAATGTTTTCACAAAAATCTGCATTC 17058 >seq1292 Length=279 Score = 93.3 bits (102), Expect = 4e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 ||||||||| | || |||||| |||||||||||||| |||||||| | |||| || Sbjct 112 CACCAAATGGAGGGTTGACTCCTTCTGAATGTTGTAATCAGCCAAGGTCCTACCGTCCTC 171 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646 |||||||| || || || ||||||| |||||| |||| || | | ||||| ||| Sbjct 172 GAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGATCCGGTGGGATCCCTTCCTTATCCTG 231 Query 35647 GATCTT 35652 |||||| Sbjct 232 GATCTT 237 >seq2680 Length=639 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | ||||||||| | || ||||| || ||||||||||| ||| Sbjct 148 CCACCACGGAGACGAAGCACCAAATGAAGGGTGGATTCCTTCTGGATGTTGTAATCTGCC 89 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||| || | || || |||||||| || ||||| |||| ||||| ||||||| || Sbjct 88 AGGGTGCGGCCATCCTCAAGCTGCTTTCCGGCAAAGATCAGACGCTGTTGGTCCGGGGGG 29 Query 35630 ACGCTCTCCTTGTCCATGATCTT 35652 | | |||||||||| ||||| Sbjct 28 ATTCCCTCCTTGTCCTGAATCTT 6 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450776869922520