Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20nelsoni_20[genbank_20GCA_5F001447455.1_202015-11-24] 2,969 sequences; 47,436,005 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq827 105 7e-18 seq2465 98.7 1e-15 seq2603 96.9 4e-15 seq1187 95.1 1e-14 seq378 93.3 4e-14 seq11 89.7 5e-13 >seq827 Length=57960 Score = 105 bits (116), Expect = 7e-18 Identities = 111/146 (76%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 || || |||||||||| |||||| |||||||| || || || ||||| || |||||||| Sbjct 31745 TTACCAGCAAAAATCAGACGCTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 31804 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 ||| || || | || ||| | | |||||| || |||||||||||||| || || Sbjct 31805 CCTTTCACATTTTCAATTGAGTCTAAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 31864 Query 134691 AAAGTTTTAACGAAAATTTGCATTTT 134716 | |||||| || || || |||||||| Sbjct 31865 AGAGTTTTCACAAATATCTGCATTTT 31890 Score = 100 bits (110), Expect = 3e-16 Identities = 111/148 (75%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 134567 CTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAAT 134626 ||| || || |||||||||||||| || ||||| || || || || ||||| |||||||| Sbjct 30491 CTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAAT 30550 Query 134627 TTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACC 134686 ||| ||| || || | ||| || || ||| || || | ||| || ||||| || Sbjct 30551 TTTGCCTTTCACATTTTCTATTGTATCAGATAGTTCTACTTCCAAAGTTATTGTTTTTCC 30610 Query 134687 GGTTAAAGTTTTAACGAAAATTTGCATT 134714 || | ||| |||||||||||||||||| Sbjct 30611 AGTAAGAGTCTTAACGAAAATTTGCATT 30638 Score = 100 bits (110), Expect = 3e-16 Identities = 111/148 (75%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 134567 CTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAAT 134626 ||| || || |||||||||||||| || ||||| || || || || ||||| |||||||| Sbjct 30773 CTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAAT 30832 Query 134627 TTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACC 134686 ||| ||| || || | ||| || || | ||| || || | ||| || ||||| || Sbjct 30833 TTTGCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCC 30892 Query 134687 GGTTAAAGTTTTAACGAAAATTTGCATT 134714 || | || |||||||||||||||||| Sbjct 30893 AGTAAGGGTCTTAACGAAAATTTGCATT 30920 Score = 98.7 bits (108), Expect = 1e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 || || |||||||||||||| || ||||| || || || || ||||| ||||||||||| Sbjct 30213 TTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATTTTG 30272 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 ||| || || | ||| || || ||| || || | ||| || ||||| || || Sbjct 30273 CCTTTCACATTTTCTATTGTATCAGATAGTTCTACTTCCAAAGTTATTGTTTTTCCAGTA 30332 Query 134691 AAAGTTTTAACGAAAATTTGCATT 134714 | ||| |||||||||||||||||| Sbjct 30333 AGAGTCTTAACGAAAATTTGCATT 30356 Score = 93.3 bits (102), Expect = 4e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 || ||||| |||||||| |||||||| || || || |||||||| || || ||||| | Sbjct 55492 CCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCCTGTATTTTCCCT 55551 Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693 || || || | ||| || || | |||||| || | || |||||||| || || | Sbjct 55552 TTCACATTTTCAATTGTATCAGATGGTTCCACTTCCAATGTGATGGTTTTGCCAGTGAGG 55611 Query 134694 GTTTTAACGAAAATTTGCATT 134714 || ||||| |||||||||||| Sbjct 55612 GTCTTAACAAAAATTTGCATT 55632 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 || |||||||||| |||||| ||||| || || || || || || |||||||| || | Sbjct 29629 CCAGCAAAAATCAGACGCTGTTGATCTGGAGGAATTCCCTCCTTATCTTGAATCTTCCCT 29688 Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693 || || || | || || || | |||||| || | || ||||| || || |||| Sbjct 29689 TTCACATTCTCAACAGTATCAGATGGTTCCACTTCCAACGTGATGGTCTTCCCAGTTAGG 29748 Query 134694 GTTTTAACGAAAATTTGCATT 134714 || ||||| |||||||||||| Sbjct 29749 GTCTTAACAAAAATTTGCATT 29769 Score = 82.4 bits (90), Expect = 8e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 || |||||||| | ||||| ||||| || || ||||||||||| |||||||| || | Sbjct 31416 CCAGCAAAAATAAGCCGCTGTTGATCCGGTGGGATGCCTTCTTTGTCTTGAATCTTGCTT 31475 Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693 || || || | ||| || || | || || || || ||||| ||||| || || || Sbjct 31476 TTTACATTTTCAATTGTATCTGATGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCAAC 31535 Query 134694 GTTTTAACGAAAATTTGCAT 134713 ||||| || || || ||||| Sbjct 31536 GTTTTCACAAATATCTGCAT 31555 >seq2465 Length=325902 Score = 98.7 bits (108), Expect = 1e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 || || ||||| ||||| ||||||||||| || || ||||||||||| ||||||||||| Sbjct 16914 TTACCAGCAAATATCAATCGCTGCTGATCAGGTGGAATGCCTTCTTTGTCTTGAATTTTG 16973 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 ||| || || | ||||| || | || || || | || || ||||| || ||| Sbjct 16974 CTTTTCACATTTTCAATCGTGTCCGAAGGCTCTACCTCCAATGTGATTGTTTTTCCAGTT 17033 Query 134691 AAAGTTTTAACGAAAATTTGCATT 134714 || ||||| || ||||| |||||| Sbjct 17034 AATGTTTTCACAAAAATCTGCATT 17057 Score = 86.0 bits (94), Expect = 6e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 || ||||| ||||| || |||||||| ||||| |||||||| || ||||||||||| | Sbjct 17203 CCAGCAAATATCAATCGTTGCTGATCAGGCGGAATGCCTTCCTTATCTTGAATTTTACTT 17262 Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693 || || || | || || || | || || || | || || ||||| || ||||| Sbjct 17263 TTCACATTTTCAATCGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTAAT 17322 Query 134694 GTTTTAACGAAAATTTGCAT 134713 ||||| || ||||| ||||| Sbjct 17323 GTTTTCACAAAAATCTGCAT 17342 >seq2603 Length=690759 Score = 96.9 bits (106), Expect = 4e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 21743 CCTCGTCGCGCGAAATCAATTCGTTGCTGAACGTGAGACCGGGCATTAAACCTCGATTTT 21802 ||||||| || || |||| |||||||||||||| | ||||||||| | || || |||| Sbjct 457010 CCTCGTCACGAGAGATCAGCTCGTTGCTGAACGTCAAACCGGGCATCAGGCCGCGCTTTT 457069 Query 21803 TAATGTAAAAAATTGCCGCAAAGCTACCGGaaaaaaaCACGCCCTCCACAATGGCGAACG 21862 | | | ||||||| ||| ||||| |||||||| || | ||| || ||| ||||||| Sbjct 457070 TCAACCAGAAAATTGACGCGAAGCTGCCGGAAAAGAAAATGCCTTCGACAGCTGCGAACG 457129 Query 21863 CCACCA 21868 | |||| Sbjct 457130 CGACCA 457135 >seq1187 Length=25466 Score = 95.1 bits (104), Expect = 1e-14 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 || || |||||||||| ||| || |||||||| || || || ||||| || |||||||| Sbjct 20379 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 20320 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 || || || | ||||| || | ||||| || || ||||||||||| || || Sbjct 20319 CCCTTCACATTTTCAATGGTGTCTGAGGGCTCCACTTCCAGTGTAATGGTTTTCCCAGTC 20260 Query 134691 AAAGTTTTAACGAAAATTTGCATTTTG 134717 | |||||| || || || ||||||||| Sbjct 20259 AGAGTTTTGACAAATATCTGCATTTTG 20233 Score = 93.3 bits (102), Expect = 4e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 || |||||||||| ||| |||||||| || || || |||||||| || || ||||| | Sbjct 20990 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCCTGTATTTTCCCT 20931 Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693 || || || | ||| || || | |||||| || | || |||||||| || || | Sbjct 20930 TTCACATTTTCAATTGTATCAGATGGTTCCACTTCCAATGTGATGGTTTTGCCAGTGAGG 20871 Query 134694 GTTTTAACGAAAATTTGCATT 134714 || ||||| |||||||||||| Sbjct 20870 GTCTTAACAAAAATTTGCATT 20850 Score = 93.3 bits (102), Expect = 4e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 || |||||||||| ||| |||||||| || || || |||||||| || || ||||| | Sbjct 21273 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCCTGTATTTTCCCT 21214 Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693 || || || | ||| || || | |||||| || | || |||||||| || || | Sbjct 21213 TTCACATTTTCAATTGTATCAGATGGTTCCACTTCCAATGTGATGGTTTTGCCAGTGAGG 21154 Query 134694 GTTTTAACGAAAATTTGCATT 134714 || ||||| |||||||||||| Sbjct 21153 GTCTTAACAAAAATTTGCATT 21133 Score = 93.3 bits (102), Expect = 4e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 || |||||||||| ||| |||||||| || || || |||||||| || || ||||| | Sbjct 21556 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCCTGTATTTTCCCT 21497 Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693 || || || | ||| || || | |||||| || | || |||||||| || || | Sbjct 21496 TTCACATTTTCAATTGTATCAGATGGTTCCACTTCCAATGTGATGGTTTTGCCAGTGAGG 21437 Query 134694 GTTTTAACGAAAATTTGCATT 134714 || ||||| |||||||||||| Sbjct 21436 GTCTTAACAAAAATTTGCATT 21416 Score = 93.3 bits (102), Expect = 4e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 || ||||| |||||||| |||||||| || || || |||||||| || || ||||| | Sbjct 22407 CCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCCTGTATTTTCCCT 22348 Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693 || || || | ||| || || | |||||| || | || |||||||| || || | Sbjct 22347 TTCACATTTTCAATTGTATCAGATGGTTCCACTTCCAATGTGATGGTTTTGCCAGTGAGG 22288 Query 134694 GTTTTAACGAAAATTTGCATT 134714 || ||||| |||||||||||| Sbjct 22287 GTCTTAACAAAAATTTGCATT 22267 Score = 87.8 bits (96), Expect = 2e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 || |||||||||||||| || ||||| || || || ||||| || || || ||||| | Sbjct 21839 CCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTCCCT 21780 Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693 || || || | ||| || || | |||||| || | || |||||||| || || | Sbjct 21779 TTCACATTTTCAATTGTATCAGATGGTTCCACTTCCAATGTGATGGTTTTGCCAGTGAGG 21720 Query 134694 GTTTTAACGAAAATTTGCATT 134714 || ||||| |||||||||||| Sbjct 21719 GTCTTAACAAAAATTTGCATT 21699 Score = 87.8 bits (96), Expect = 2e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 || |||||||||| ||| |||||||| || || || ||||| || || || ||||| | Sbjct 22124 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCCTTATCCTGTATTTTGCCT 22065 Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693 || || || | ||| || || | ||| || || | || || ||||| || || | | Sbjct 22064 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAATGTTATTGTTTTTCCAGTAAGA 22005 Query 134694 GTTTTAACGAAAATTTGCATT 134714 || |||||||||||||||||| Sbjct 22004 GTCTTAACGAAAATTTGCATT 21984 Score = 86.0 bits (94), Expect = 6e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 || |||||||| | ||||| ||||| || || ||||||||||| |||||||| || | Sbjct 20708 CCAGCAAAAATAAGCCGCTGTTGATCCGGTGGGATGCCTTCTTTGTCTTGAATCTTGCTT 20649 Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693 || || || | ||| || |||| || || || || ||||| ||||| || || || Sbjct 20648 TTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCAAC 20589 Query 134694 GTTTTAACGAAAATTTGCAT 134713 ||||| || || || ||||| Sbjct 20588 GTTTTCACAAATATCTGCAT 20569 >seq378 Length=398 Score = 93.3 bits (102), Expect = 4e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 || ||||| |||||||| |||||||| || || || ||||| || || || ||||| | Sbjct 254 CCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCCTTATCCTGTATTTTGCCT 195 Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693 || || || | ||| || || | ||| || || | || || ||||| ||||| | | Sbjct 194 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAAGA 135 Query 134694 GTTTTAACGAAAATTTGCATT 134714 || |||||||||||||||||| Sbjct 134 GTCTTAACGAAAATTTGCATT 114 >seq11 Length=460 Score = 89.7 bits (98), Expect = 5e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 || || ||||| |||||||| || ||||| || || || ||||| || || || ||||| Sbjct 202 TTACCAGCAAATATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTG 143 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 ||| || || | ||| || || | ||| || || | || || ||||| ||||| Sbjct 142 CCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTA 83 Query 134691 AAAGTTTTAACGAAAATTTGCATT 134714 | ||| |||||||||||||||||| Sbjct 82 AGAGTCTTAACGAAAATTTGCATT 59 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505379643401880