Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20nelsoni_20[genbank_20GCA_5F001447455.1_202015-11-24]
2,969 sequences; 47,436,005 total letters
Query= NC_026922.1
Length=157977
Score E
Sequences producing significant alignments: (Bits) Value
seq827 105 7e-18
seq2465 98.7 1e-15
seq2603 96.9 4e-15
seq1187 95.1 1e-14
seq378 93.3 4e-14
seq11 89.7 5e-13
>seq827
Length=57960
Score = 105 bits (116), Expect = 7e-18
Identities = 111/146 (76%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630
|| || |||||||||| |||||| |||||||| || || || ||||| || ||||||||
Sbjct 31745 TTACCAGCAAAAATCAGACGCTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 31804
Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690
||| || || | || ||| | | |||||| || |||||||||||||| || ||
Sbjct 31805 CCTTTCACATTTTCAATTGAGTCTAAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 31864
Query 134691 AAAGTTTTAACGAAAATTTGCATTTT 134716
| |||||| || || || ||||||||
Sbjct 31865 AGAGTTTTCACAAATATCTGCATTTT 31890
Score = 100 bits (110), Expect = 3e-16
Identities = 111/148 (75%), Gaps = 0/148 (0%)
Strand=Plus/Plus
Query 134567 CTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAAT 134626
||| || || |||||||||||||| || ||||| || || || || ||||| ||||||||
Sbjct 30491 CTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAAT 30550
Query 134627 TTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACC 134686
||| ||| || || | ||| || || ||| || || | ||| || ||||| ||
Sbjct 30551 TTTGCCTTTCACATTTTCTATTGTATCAGATAGTTCTACTTCCAAAGTTATTGTTTTTCC 30610
Query 134687 GGTTAAAGTTTTAACGAAAATTTGCATT 134714
|| | ||| ||||||||||||||||||
Sbjct 30611 AGTAAGAGTCTTAACGAAAATTTGCATT 30638
Score = 100 bits (110), Expect = 3e-16
Identities = 111/148 (75%), Gaps = 0/148 (0%)
Strand=Plus/Plus
Query 134567 CTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAAT 134626
||| || || |||||||||||||| || ||||| || || || || ||||| ||||||||
Sbjct 30773 CTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAAT 30832
Query 134627 TTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACC 134686
||| ||| || || | ||| || || | ||| || || | ||| || ||||| ||
Sbjct 30833 TTTGCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCC 30892
Query 134687 GGTTAAAGTTTTAACGAAAATTTGCATT 134714
|| | || ||||||||||||||||||
Sbjct 30893 AGTAAGGGTCTTAACGAAAATTTGCATT 30920
Score = 98.7 bits (108), Expect = 1e-15
Identities = 108/144 (75%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630
|| || |||||||||||||| || ||||| || || || || ||||| |||||||||||
Sbjct 30213 TTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATTTTG 30272
Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690
||| || || | ||| || || ||| || || | ||| || ||||| || ||
Sbjct 30273 CCTTTCACATTTTCTATTGTATCAGATAGTTCTACTTCCAAAGTTATTGTTTTTCCAGTA 30332
Query 134691 AAAGTTTTAACGAAAATTTGCATT 134714
| ||| ||||||||||||||||||
Sbjct 30333 AGAGTCTTAACGAAAATTTGCATT 30356
Score = 93.3 bits (102), Expect = 4e-14
Identities = 105/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633
|| ||||| |||||||| |||||||| || || || |||||||| || || ||||| |
Sbjct 55492 CCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCCTGTATTTTCCCT 55551
Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693
|| || || | ||| || || | |||||| || | || |||||||| || || |
Sbjct 55552 TTCACATTTTCAATTGTATCAGATGGTTCCACTTCCAATGTGATGGTTTTGCCAGTGAGG 55611
Query 134694 GTTTTAACGAAAATTTGCATT 134714
|| ||||| ||||||||||||
Sbjct 55612 GTCTTAACAAAAATTTGCATT 55632
Score = 84.2 bits (92), Expect = 2e-11
Identities = 103/141 (73%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633
|| |||||||||| |||||| ||||| || || || || || || |||||||| || |
Sbjct 29629 CCAGCAAAAATCAGACGCTGTTGATCTGGAGGAATTCCCTCCTTATCTTGAATCTTCCCT 29688
Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693
|| || || | || || || | |||||| || | || ||||| || || ||||
Sbjct 29689 TTCACATTCTCAACAGTATCAGATGGTTCCACTTCCAACGTGATGGTCTTCCCAGTTAGG 29748
Query 134694 GTTTTAACGAAAATTTGCATT 134714
|| ||||| ||||||||||||
Sbjct 29749 GTCTTAACAAAAATTTGCATT 29769
Score = 82.4 bits (90), Expect = 8e-11
Identities = 102/140 (73%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633
|| |||||||| | ||||| ||||| || || ||||||||||| |||||||| || |
Sbjct 31416 CCAGCAAAAATAAGCCGCTGTTGATCCGGTGGGATGCCTTCTTTGTCTTGAATCTTGCTT 31475
Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693
|| || || | ||| || || | || || || || ||||| ||||| || || ||
Sbjct 31476 TTTACATTTTCAATTGTATCTGATGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCAAC 31535
Query 134694 GTTTTAACGAAAATTTGCAT 134713
||||| || || || |||||
Sbjct 31536 GTTTTCACAAATATCTGCAT 31555
>seq2465
Length=325902
Score = 98.7 bits (108), Expect = 1e-15
Identities = 108/144 (75%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630
|| || ||||| ||||| ||||||||||| || || ||||||||||| |||||||||||
Sbjct 16914 TTACCAGCAAATATCAATCGCTGCTGATCAGGTGGAATGCCTTCTTTGTCTTGAATTTTG 16973
Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690
||| || || | ||||| || | || || || | || || ||||| || |||
Sbjct 16974 CTTTTCACATTTTCAATCGTGTCCGAAGGCTCTACCTCCAATGTGATTGTTTTTCCAGTT 17033
Query 134691 AAAGTTTTAACGAAAATTTGCATT 134714
|| ||||| || ||||| ||||||
Sbjct 17034 AATGTTTTCACAAAAATCTGCATT 17057
Score = 86.0 bits (94), Expect = 6e-12
Identities = 103/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633
|| ||||| ||||| || |||||||| ||||| |||||||| || ||||||||||| |
Sbjct 17203 CCAGCAAATATCAATCGTTGCTGATCAGGCGGAATGCCTTCCTTATCTTGAATTTTACTT 17262
Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693
|| || || | || || || | || || || | || || ||||| || |||||
Sbjct 17263 TTCACATTTTCAATCGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTAAT 17322
Query 134694 GTTTTAACGAAAATTTGCAT 134713
||||| || ||||| |||||
Sbjct 17323 GTTTTCACAAAAATCTGCAT 17342
>seq2603
Length=690759
Score = 96.9 bits (106), Expect = 4e-15
Identities = 97/126 (77%), Gaps = 0/126 (0%)
Strand=Plus/Plus
Query 21743 CCTCGTCGCGCGAAATCAATTCGTTGCTGAACGTGAGACCGGGCATTAAACCTCGATTTT 21802
||||||| || || |||| |||||||||||||| | ||||||||| | || || ||||
Sbjct 457010 CCTCGTCACGAGAGATCAGCTCGTTGCTGAACGTCAAACCGGGCATCAGGCCGCGCTTTT 457069
Query 21803 TAATGTAAAAAATTGCCGCAAAGCTACCGGaaaaaaaCACGCCCTCCACAATGGCGAACG 21862
| | | ||||||| ||| ||||| |||||||| || | ||| || ||| |||||||
Sbjct 457070 TCAACCAGAAAATTGACGCGAAGCTGCCGGAAAAGAAAATGCCTTCGACAGCTGCGAACG 457129
Query 21863 CCACCA 21868
| ||||
Sbjct 457130 CGACCA 457135
>seq1187
Length=25466
Score = 95.1 bits (104), Expect = 1e-14
Identities = 109/147 (74%), Gaps = 0/147 (0%)
Strand=Plus/Minus
Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630
|| || |||||||||| ||| || |||||||| || || || ||||| || ||||||||
Sbjct 20379 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 20320
Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690
|| || || | ||||| || | ||||| || || ||||||||||| || ||
Sbjct 20319 CCCTTCACATTTTCAATGGTGTCTGAGGGCTCCACTTCCAGTGTAATGGTTTTCCCAGTC 20260
Query 134691 AAAGTTTTAACGAAAATTTGCATTTTG 134717
| |||||| || || || |||||||||
Sbjct 20259 AGAGTTTTGACAAATATCTGCATTTTG 20233
Score = 93.3 bits (102), Expect = 4e-14
Identities = 105/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633
|| |||||||||| ||| |||||||| || || || |||||||| || || ||||| |
Sbjct 20990 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCCTGTATTTTCCCT 20931
Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693
|| || || | ||| || || | |||||| || | || |||||||| || || |
Sbjct 20930 TTCACATTTTCAATTGTATCAGATGGTTCCACTTCCAATGTGATGGTTTTGCCAGTGAGG 20871
Query 134694 GTTTTAACGAAAATTTGCATT 134714
|| ||||| ||||||||||||
Sbjct 20870 GTCTTAACAAAAATTTGCATT 20850
Score = 93.3 bits (102), Expect = 4e-14
Identities = 105/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633
|| |||||||||| ||| |||||||| || || || |||||||| || || ||||| |
Sbjct 21273 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCCTGTATTTTCCCT 21214
Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693
|| || || | ||| || || | |||||| || | || |||||||| || || |
Sbjct 21213 TTCACATTTTCAATTGTATCAGATGGTTCCACTTCCAATGTGATGGTTTTGCCAGTGAGG 21154
Query 134694 GTTTTAACGAAAATTTGCATT 134714
|| ||||| ||||||||||||
Sbjct 21153 GTCTTAACAAAAATTTGCATT 21133
Score = 93.3 bits (102), Expect = 4e-14
Identities = 105/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633
|| |||||||||| ||| |||||||| || || || |||||||| || || ||||| |
Sbjct 21556 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCCTGTATTTTCCCT 21497
Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693
|| || || | ||| || || | |||||| || | || |||||||| || || |
Sbjct 21496 TTCACATTTTCAATTGTATCAGATGGTTCCACTTCCAATGTGATGGTTTTGCCAGTGAGG 21437
Query 134694 GTTTTAACGAAAATTTGCATT 134714
|| ||||| ||||||||||||
Sbjct 21436 GTCTTAACAAAAATTTGCATT 21416
Score = 93.3 bits (102), Expect = 4e-14
Identities = 105/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633
|| ||||| |||||||| |||||||| || || || |||||||| || || ||||| |
Sbjct 22407 CCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCCTGTATTTTCCCT 22348
Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693
|| || || | ||| || || | |||||| || | || |||||||| || || |
Sbjct 22347 TTCACATTTTCAATTGTATCAGATGGTTCCACTTCCAATGTGATGGTTTTGCCAGTGAGG 22288
Query 134694 GTTTTAACGAAAATTTGCATT 134714
|| ||||| ||||||||||||
Sbjct 22287 GTCTTAACAAAAATTTGCATT 22267
Score = 87.8 bits (96), Expect = 2e-12
Identities = 104/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633
|| |||||||||||||| || ||||| || || || ||||| || || || ||||| |
Sbjct 21839 CCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTCCCT 21780
Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693
|| || || | ||| || || | |||||| || | || |||||||| || || |
Sbjct 21779 TTCACATTTTCAATTGTATCAGATGGTTCCACTTCCAATGTGATGGTTTTGCCAGTGAGG 21720
Query 134694 GTTTTAACGAAAATTTGCATT 134714
|| ||||| ||||||||||||
Sbjct 21719 GTCTTAACAAAAATTTGCATT 21699
Score = 87.8 bits (96), Expect = 2e-12
Identities = 104/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633
|| |||||||||| ||| |||||||| || || || ||||| || || || ||||| |
Sbjct 22124 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCCTTATCCTGTATTTTGCCT 22065
Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693
|| || || | ||| || || | ||| || || | || || ||||| || || | |
Sbjct 22064 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAATGTTATTGTTTTTCCAGTAAGA 22005
Query 134694 GTTTTAACGAAAATTTGCATT 134714
|| ||||||||||||||||||
Sbjct 22004 GTCTTAACGAAAATTTGCATT 21984
Score = 86.0 bits (94), Expect = 6e-12
Identities = 103/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633
|| |||||||| | ||||| ||||| || || ||||||||||| |||||||| || |
Sbjct 20708 CCAGCAAAAATAAGCCGCTGTTGATCCGGTGGGATGCCTTCTTTGTCTTGAATCTTGCTT 20649
Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693
|| || || | ||| || |||| || || || || ||||| ||||| || || ||
Sbjct 20648 TTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCAAC 20589
Query 134694 GTTTTAACGAAAATTTGCAT 134713
||||| || || || |||||
Sbjct 20588 GTTTTCACAAATATCTGCAT 20569
>seq378
Length=398
Score = 93.3 bits (102), Expect = 4e-14
Identities = 105/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633
|| ||||| |||||||| |||||||| || || || ||||| || || || ||||| |
Sbjct 254 CCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCCTTATCCTGTATTTTGCCT 195
Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693
|| || || | ||| || || | ||| || || | || || ||||| ||||| | |
Sbjct 194 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAAGA 135
Query 134694 GTTTTAACGAAAATTTGCATT 134714
|| ||||||||||||||||||
Sbjct 134 GTCTTAACGAAAATTTGCATT 114
>seq11
Length=460
Score = 89.7 bits (98), Expect = 5e-13
Identities = 106/144 (74%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630
|| || ||||| |||||||| || ||||| || || || ||||| || || || |||||
Sbjct 202 TTACCAGCAAATATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTG 143
Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690
||| || || | ||| || || | ||| || || | || || ||||| |||||
Sbjct 142 CCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTA 83
Query 134691 AAAGTTTTAACGAAAATTTGCATT 134714
| ||| ||||||||||||||||||
Sbjct 82 AGAGTCTTAACGAAAATTTGCATT 59
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 505379643401880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |