Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20nelsoni_20[genbank_20GCA_5F001447455.1_202015-11-24] 2,969 sequences; 47,436,005 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq2810 138 2e-27 >seq2810 Length=199988 Score = 138 bits (152), Expect = 2e-27 Identities = 163/221 (74%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 68365 TTATCCAATGTAAACTGAATGGGTGAGGATGCGGGTTTTGTACGTAGATAGTACATACCG 68424 ||||||| || || ||||| | | ||| || || || | | ||||||||| || Sbjct 181994 TTATCCACGGTGAATTGAATAGCCGTCACTGCCGGCTTGGTTCTCAAATAGTACATCCCA 182053 Query 68425 GTTTTCAGACCTAGACTCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGA 68484 ||||||||||| |||| |||||||||||||| ||| | ||| | |||| | || Sbjct 182054 GTTTTCAGACCCTTCTTCCAGCCGTAGAAATGCATTGATGTCAATTTAGCATAATTCGGC 182113 Query 68485 TCGGCTATATGAATATTCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCC 68544 |||||||| |||||||||| ||| || |||||| ||||| ||||| || || || ||| Sbjct 182114 TCGGCTATGTGAATATTCAACGACTGGGATTGATCAATGAATGCTCCCCTTTCGGCGGCC 182173 Query 68545 ATTTTTATAATACTCTTTTGAGGAATTTCCCAAATAGTCTT 68585 || | ||| | | |||||| | ||||||||||| ||||| Sbjct 182174 ATGTCTATGACGCACTTTTGGGAAATTTCCCAAACCGTCTT 182214 Score = 109 bits (120), Expect = 8e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 69516 TTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGA 69575 ||| || ||||| ||||| | ||| |||||||||||||||||| || ||||||| ||| Sbjct 183487 TTCAAACTCATCGCCCCACAAATCCGCCAATCCAGGACATTCATGAGGGCACATCAGTGA 183546 Query 69576 CCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAA 69635 ||| | | || | | || || ||||| |||||||| || ||||| || || ||| Sbjct 183547 CCAATCTCCGTCGGCTTCAATGCGCTTCATGAATAGATCAGGTATCCAGAGGGCGTAAAA 183606 Query 69636 GAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCAT 69695 | ||||| || || |||||||| ||||| || ||||| || ||||| || | Sbjct 183607 CAAATCTCGGGCTCGGTTTTCTTCGACGCCTGTGTTCTTTTTCGCGTCAAGAAAATCAAA 183666 Query 69696 AATATCAGAATGCCATGGTTCTAGATATATCGC 69728 || || | ||||| ||||| | ||| | ||| Sbjct 183667 TATGTCTGCGTGCCAAGGTTCCAAATAGACCGC 183699 Score = 98.7 bits (108), Expect = 1e-15 Identities = 99/129 (77%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 69315 ATATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATT 69374 |||||| | || ||||| || || || |||||| ||||| ||||||||||||||||| Sbjct 183226 ATATTGAACAATTTCTGTGCACAGGTTTGAACATTTTATAGTACCCAGATTTTGCTGATT 183285 Query 69375 ACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGA 69434 ||| | || || || || ||||| | |||||||| || ||||||||||| ||||| Sbjct 183286 CGATTTTCTATTGCACGCATCTTTGTAGACCATAAACGGTGTGCCAGTTTCAATTTGAGA 183345 Query 69435 TTCGATAAT 69443 || ||||| Sbjct 183346 CTCAATAAT 183354 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686883307097160