Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20nelsoni_20[genbank_20GCA_5F001447455.1_202015-11-24]
2,969 sequences; 47,436,005 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq2810 138 2e-27
>seq2810
Length=199988
Score = 138 bits (152), Expect = 2e-27
Identities = 163/221 (74%), Gaps = 0/221 (0%)
Strand=Plus/Plus
Query 68365 TTATCCAATGTAAACTGAATGGGTGAGGATGCGGGTTTTGTACGTAGATAGTACATACCG 68424
||||||| || || ||||| | | ||| || || || | | ||||||||| ||
Sbjct 181994 TTATCCACGGTGAATTGAATAGCCGTCACTGCCGGCTTGGTTCTCAAATAGTACATCCCA 182053
Query 68425 GTTTTCAGACCTAGACTCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGA 68484
||||||||||| |||| |||||||||||||| ||| | ||| | |||| | ||
Sbjct 182054 GTTTTCAGACCCTTCTTCCAGCCGTAGAAATGCATTGATGTCAATTTAGCATAATTCGGC 182113
Query 68485 TCGGCTATATGAATATTCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCC 68544
|||||||| |||||||||| ||| || |||||| ||||| ||||| || || || |||
Sbjct 182114 TCGGCTATGTGAATATTCAACGACTGGGATTGATCAATGAATGCTCCCCTTTCGGCGGCC 182173
Query 68545 ATTTTTATAATACTCTTTTGAGGAATTTCCCAAATAGTCTT 68585
|| | ||| | | |||||| | ||||||||||| |||||
Sbjct 182174 ATGTCTATGACGCACTTTTGGGAAATTTCCCAAACCGTCTT 182214
Score = 109 bits (120), Expect = 8e-19
Identities = 152/213 (71%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 69516 TTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGA 69575
||| || ||||| ||||| | ||| |||||||||||||||||| || ||||||| |||
Sbjct 183487 TTCAAACTCATCGCCCCACAAATCCGCCAATCCAGGACATTCATGAGGGCACATCAGTGA 183546
Query 69576 CCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAA 69635
||| | | || | | || || ||||| |||||||| || ||||| || || |||
Sbjct 183547 CCAATCTCCGTCGGCTTCAATGCGCTTCATGAATAGATCAGGTATCCAGAGGGCGTAAAA 183606
Query 69636 GAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCAT 69695
| ||||| || || |||||||| ||||| || ||||| || ||||| || |
Sbjct 183607 CAAATCTCGGGCTCGGTTTTCTTCGACGCCTGTGTTCTTTTTCGCGTCAAGAAAATCAAA 183666
Query 69696 AATATCAGAATGCCATGGTTCTAGATATATCGC 69728
|| || | ||||| ||||| | ||| | |||
Sbjct 183667 TATGTCTGCGTGCCAAGGTTCCAAATAGACCGC 183699
Score = 98.7 bits (108), Expect = 1e-15
Identities = 99/129 (77%), Gaps = 0/129 (0%)
Strand=Plus/Plus
Query 69315 ATATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATT 69374
|||||| | || ||||| || || || |||||| ||||| |||||||||||||||||
Sbjct 183226 ATATTGAACAATTTCTGTGCACAGGTTTGAACATTTTATAGTACCCAGATTTTGCTGATT 183285
Query 69375 ACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGA 69434
||| | || || || || ||||| | |||||||| || ||||||||||| |||||
Sbjct 183286 CGATTTTCTATTGCACGCATCTTTGTAGACCATAAACGGTGTGCCAGTTTCAATTTGAGA 183345
Query 69435 TTCGATAAT 69443
|| |||||
Sbjct 183346 CTCAATAAT 183354
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686883307097160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |