Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20nelsoni_20[genbank_20GCA_5F001447455.1_202015-11-24]
2,969 sequences; 47,436,005 total letters
Query= NC_027923.1
Length=132831
Score E
Sequences producing significant alignments: (Bits) Value
seq827 96.9 3e-15
seq2603 84.2 2e-11
seq1187 82.4 6e-11
>seq827
Length=57960
Score = 96.9 bits (106), Expect = 3e-15
Identities = 107/143 (75%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 27105 TTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTG 27164
||||| || |||| |||||||||||||| || || | ||||||||||| || ||
Sbjct 31745 TTACCAGCAAAAATCAGACGCTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 31804
Query 27165 TTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTC 27224
||||| |||| | | |||| || ||| ||||| ||||| || | ||| || |||
Sbjct 31805 CCTTTCACATTTTCAATTGAGTCTAAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 31864
Query 27225 AGAGTTTTCACAAAGATTTGCAT 27247
|||||||||||||| || |||||
Sbjct 31865 AGAGTTTTCACAAATATCTGCAT 31887
Score = 84.2 bits (92), Expect = 2e-11
Identities = 106/143 (74%), Gaps = 2/143 (1%)
Strand=Plus/Plus
Query 27106 TACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGT 27165
|||| || |||| || |||||||||||||| || | || ||||| || ||||||
Sbjct 31414 TACCAGCAAAAATAAGCCGCTGTTGATCCGGTGGGATGCCTTCTTTGTCTTGAATCTTGC 31473
Query 27166 TTTTCAGGGTTTCTACAGTGTCTG-TGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTC 27224
|||| | |||| | || |||| |||| |||||||| || || || | ||| || |||
Sbjct 31474 TTTTTACATTTTCAATTGTATCTGATGGC-TCAACTTCAAGTGTAATCGTTTTTCCTGTC 31532
Query 27225 AGAGTTTTCACAAAGATTTGCAT 27247
| ||||||||||| || |||||
Sbjct 31533 AACGTTTTCACAAATATCTGCAT 31555
>seq2603
Length=690759
Score = 84.2 bits (92), Expect = 2e-11
Identities = 66/79 (84%), Gaps = 0/79 (0%)
Strand=Plus/Plus
Query 108257 TCTTGTACTCGCCGACGCGTCTTTCGAAAAAGTTGGTTTTGCCTTCTAGCGAAATCATGT 108316
||| ||| |||||||||||| ||||||||||||| ||||| ||||| |||||||||| |
Sbjct 456539 TCTGGTATTCGCCGACGCGTTTTTCGAAAAAGTTCGTTTTACCTTCCAGCGAAATCAATT 456598
Query 108317 TCATAAAATGAAAGGGATT 108335
|||||| | || |||||
Sbjct 456599 CCATAAAGTCGAACGGATT 456617
Score = 84.2 bits (92), Expect = 2e-11
Identities = 93/124 (75%), Gaps = 0/124 (0%)
Strand=Plus/Plus
Query 108580 TCGTCGCGACTTATGAGCTCGTTACTGAACGTCAAACCCGGCATAATACCTTTCGTTTTA 108639
||||| ||| || |||||||| |||||||||||||| ||||| | || | ||||
Sbjct 457012 TCGTCACGAGAGATCAGCTCGTTGCTGAACGTCAAACCGGGCATCAGGCCGCGCTTTTTC 457071
Query 108640 ATGTAAAATATTGCCGCAAAACTGCCGGaaaaaaaTATTCCCTCGACAATTGCAAACGCA 108699
| | || |||| ||| || ||||||||||| || || || |||||| ||| |||||
Sbjct 457072 AACCAGAAAATTGACGCGAAGCTGCCGGAAAAGAAAATGCCTTCGACAGCTGCGAACGCG 457131
Query 108700 ACCA 108703
||||
Sbjct 457132 ACCA 457135
>seq1187
Length=25466
Score = 82.4 bits (90), Expect = 6e-11
Identities = 104/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 27105 TTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTG 27164
||||| || |||| ||||| |||||||| || || | ||||||||||| || ||
Sbjct 20379 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 20320
Query 27165 TTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTC 27224
|||| |||| | ||||||| || || ||||| || || || | ||| || |||
Sbjct 20319 CCCTTCACATTTTCAATGGTGTCTGAGGGCTCCACTTCCAGTGTAATGGTTTTCCCAGTC 20260
Query 27225 AGAGTTTTCACAAAGATTTGCAT 27247
|||||||| ||||| || |||||
Sbjct 20259 AGAGTTTTGACAAATATCTGCAT 20237
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 424919023881528
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |