Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20nelsoni_20[genbank_20GCA_5F001447455.1_202015-11-24] 2,969 sequences; 47,436,005 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq2603 96.9 1e-14 >seq2603 Length=690759 Score = 96.9 bits (106), Expect = 1e-14 Identities = 97/125 (78%), Gaps = 1/125 (1%) Strand=Plus/Minus Query 443715 GTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCTTTAGCCTCCATCTTCTG 443774 ||||| || || | |||||||| | || ||| ||||||||| || || || ||||| Sbjct 457133 GTCGCGTTCGCAGCTGTCGAAGGCATTTTCTTTTCCGGCAGCTTC-GCGTCAATTTTCTG 457075 Query 443775 GTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACGAACTGATCAGTCGGGA 443834 |||||||||||| || || |||| |||| |||| || || ||||| |||||| ||| || Sbjct 457074 GTTGAAAAAGCGCGGCCTGATGCCCGGTTTGACGTTCAGCAACGAGCTGATCTCTCGTGA 457015 Query 443835 CGAGG 443839 ||||| Sbjct 457014 CGAGG 457010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588275579202205