Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20nelsoni_20[genbank_20GCA_5F001447455.1_202015-11-24] 2,969 sequences; 47,436,005 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq2516 378 2e-99 seq2371 152 2e-31 seq2465 149 2e-30 seq1187 141 3e-28 seq827 138 3e-27 seq2680 134 4e-26 seq378 129 2e-24 seq11 125 2e-23 seq1696 105 2e-17 seq2706 98.7 3e-15 seq2741 89.7 2e-12 >seq2516 Length=768920 Score = 378 bits (418), Expect = 2e-99 Identities = 568/804 (71%), Gaps = 5/804 (1%) Strand=Plus/Minus Query 349199 GCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGT 349258 ||||| ||||| ||||| |||||||| || |||||||| || | || ||| | Sbjct 551782 GCTATTGGAATTGATTTGGGTACTACCTACAGTTGTGTTGGCGTGTTCCAGCATGGTAAA 551723 Query 349259 GTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACC 349318 || ||||| ||||| || |||||||| || | || |||||| || ||||| || ||| Sbjct 551722 GTTGAAATTATTGCCAACGATCAAGGGAATCGTACCACGCCAAGTTATGTTGCTTTCACC 551663 Query 349319 GAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAAT 349378 || || ||||| ||||||| ||| | ||||||||||||| ||| ||||| | ||| Sbjct 551662 GATACCGAGCGACTGATTGGAGATGCGGCAAAAAATCAAGTTGCGTTGAATCCTCATAAT 551603 Query 349379 ACGGTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGACAAATCTACACAATCT 349438 || ||||||||||| |||||||| || ||| | | ||| ||| | || ||| Sbjct 551602 ACAGTTTTTGATGCGAAGCGACTCATCGGTCGTCGATTTGATGATGCTGCGGTGCAGTCT 551543 Query 349439 GATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAG 349498 ||| | ||||||| || || | ||| | || || || ||||| | ||| | Sbjct 551542 GATATGAAACATTGGCCATTCAAAGTTATC---AACGATGGATCGAAACCTAAAATTCAA 551486 Query 349499 GTTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTTA 349558 || ||||| ||||| || || |||| |||||||||||| | ||||| ||| Sbjct 551485 GTCGAATACAAAGGCGAGTCGAAGTCATTTACACCCGAAGAAATCAGTGCTATGGTGTTA 551426 Query 349559 GTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATT 349618 || || |||||||||| ||| ||||| ||||| || |||| || | ||||| || ||| Sbjct 551425 GTGAAGATGAAGGAAACTGCCGAAGCTTATTTGGGAAAAACTGTTAAGGATGCCGTAATT 551366 Query 349619 ACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATT 349678 ||||| || || |||||||| ||| | |||||| || || ||||| ||||| | ||| Sbjct 551365 ACTGTTCCGGCATATTTTAACGATTCTCAGCGTCAGGCGACCAAAGACGCTGGAACGATT 551306 Query 349679 GCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGG 349738 | || || |||||| | | || || || ||||| || || || |||||||| ||||| Sbjct 551305 TCTGGTTTGAATGTTTTGCGTATCATCAACGAACCAACAGCGGCTGCAATTGCTTATGGA 551246 Query 349739 CTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACT 349798 ||||||| || | ||| | ||| |||| |||| || ||||| | |||||||||||| Sbjct 551245 CTTGATAGAAAGGGTGGCGGTGAACGAAATGTTCTGATATTTGACCTTGGTGGTGGTACT 551186 Query 349799 TTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGT 349858 |||||||| || | | || | ||||| || |||||||| || || | || |||||| Sbjct 551185 TTTGATGTGTCTATTTTGACCATCGAAGATGGCATTTTTGAGGTCAAGTCTACCGCTGGT 551126 Query 349859 GATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAA 349918 || || ||| | ||||| || || || || ||||| | || ||||| || || Sbjct 551125 GACACTCATTTGGGTGGTGAGGACTTCGACAATCGAATGGTAAATCATTTCGTGGCTGAG 551066 Query 349919 TTTAAGCGTCAAG-CTAAAATTGATATTGGAGATAATCCTAGAGCAATGCGTCGCCTAAG 349977 |||||||| |||| || | || || | |||||| | ||| |||||||| | | Sbjct 551065 TTTAAGCG-CAAGAACAAGAAGGACATGTCATCTAATCCACGCGCATTGCGTCGCTTGCG 551007 Query 349978 AACTGCGTGTGAACGTGCTAAGCG 350001 || || |||||||| || ||||| Sbjct 551006 CACAGCTTGTGAACGAGCGAAGCG 550983 Score = 105 bits (116), Expect = 2e-17 Identities = 156/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 183570 TTAGCTCGTTCACATGCTGTTCTTAGTCGACGTAATGATCTTGGATTATCTGTAATATCT 183629 || ||||||||||| ||||| | | ||||| |||| | ||||||| || || || Sbjct 550986 TTCGCTCGTTCACAAGCTGTGCGCAAGCGACGCAATGCGCGTGGATTAGATGACATGTCC 551045 Query 183630 TGTTTATGTTTTCTTTTAAATTCAGTAATAAAATGTTGAAGTAATCTTGTATCAAAATCT 183689 | || | || | ||||| |||| | ||||| | | | || | || || || Sbjct 551046 TTCTTGTTCTTGCGCTTAAACTCAGCCACGAAATGATTTACCATTCGATTGTCGAAGTCC 551105 Query 183690 TCACCACCTAAATGTGTATCGCCAGCAGTAGCTTTAACTTCAAATATTCCGTCTTCAATA 183749 |||||||| ||||| || || ||||| |||| || || ||||| || || ||||| || Sbjct 551106 TCACCACCCAAATGAGTGTCACCAGCGGTAGACTTGACCTCAAAAATGCCATCTTCGATG 551165 Query 183750 TTTAAAATTGATACATCAAATGTACCACCACCCAAATCAAA 183790 | ||||| || |||||||| ||||||||||| | ||||| Sbjct 551166 GTCAAAATAGACACATCAAAAGTACCACCACCAAGGTCAAA 551206 Score = 102 bits (112), Expect = 2e-16 Identities = 190/277 (69%), Gaps = 4/277 (1%) Strand=Plus/Minus Query 350030 ATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGG 350089 |||||||||||| || || |||| ||||||| | ||||||| | ||||| Sbjct 550899 ATTGAAATTGATAGCCTCTACGAAGGCATTGATTTCTACACCACTATTACCAGAGCTCGC 550840 Query 350090 TTTGAAGAATTATGTATG--GATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAGTAT 350147 || ||||| || | ||| || | || | | || |||| || || ||||||| Sbjct 550839 TTCGAAGAGTT--GAATGCTGACTTGTTCCGTTCTACTTTGGAACCAGTAGAAAAAGCTC 550782 Query 350148 TAAAAGATGCAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTTCTA 350207 | || || ||| | |||| |||| ||||||| ||||| || ||||| |||| Sbjct 550781 TTCGTGACGCGAAATTAGACAAAGCAGTGATTCATGAAGTTGTTTTGGTGGGTGGATCTA 550722 Query 350208 CACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAACCTTCTA 350267 | || ||||| |||||||| |||| | || ||||||||||| ||||||| | | Sbjct 550721 CTCGCATTCCTAAAGTTCAGAAGTTGTTGCAAGATTTTTTTAATGGGAAAGAACTTAACA 550662 Query 350268 GATCAATTAATCCAGATGAAGCTGTTGCATATGGTGC 350304 | || |||||||| ||||||||||| ||||| || Sbjct 550661 AAAGCATCAATCCAGACGAAGCTGTTGCCTATGGAGC 550625 Score = 84.2 bits (92), Expect = 7e-11 Identities = 189/279 (68%), Gaps = 4/279 (1%) Strand=Plus/Plus Query 183262 CTGCACCATATGCAACAGCTTCATCTGGGTTAATTGAACGAGATAA-TTCTTTGCCATTA 183320 |||| ||||| ||||||||||| ||||| || || | | ||| |||||| |||||| Sbjct 550623 CTGCTCCATAGGCAACAGCTTCGTCTGGATTGAT-GCTTTTGTTAAGTTCTTTCCCATTA 550681 Query 183321 AAAAATTCTGAAAGCATTTGTTGAATTTTTGGAATTCTAGTTGAACCACCGACTAATACT 183380 ||||| ||| | || | |||| ||| ||||| | ||| || ||||| || || || Sbjct 550682 AAAAAATCTTGCAACAACTTCTGAACTTTAGGAATGCGAGTAGATCCACCCACCAAAACA 550741 Query 183381 ACTTCATCGAT-ATTACTTTTACTAATTTGTGAATCTTTTAAAACTTTTTCAACAGGGTC 183439 ||||||| || | | |||| ||||||| | || | | ||||||| || || || Sbjct 550742 ACTTCATGAATCACTGCTTTGTCTAATTT-CGCGTCACGAAGAGCTTTTTCTACTGGTTC 550800 Query 183440 CATAGTTTTTCTAAATAAATCTATACATAACTCTTCTAATCTTGCTCTAGTTAAAGATGa 183499 || ||| | || || || | |||||||| || | ||||| || | || | Sbjct 550801 CAAAGTAGAACGGAACAAGTCAGCATTCAACTCTTCGAAGCGAGCTCTGGTAATAGTGGT 550860 Query 183500 aaaaaaGTCAATACCATTATATAAGGAATCAATTTCAAT 183538 | || ||||| || | || | | |||||||||||| Sbjct 550861 GTAGAAATCAATGCCTTCGTAGAGGCTATCAATTTCAAT 550899 >seq2371 Length=372962 Score = 152 bits (168), Expect = 2e-31 Identities = 328/485 (68%), Gaps = 8/485 (2%) Strand=Plus/Plus Query 349233 GTGTTGCTGTTTGGCAAAATGATCGTGTAGAAATAATTGCAAATGATCAAGGTAACAGAA 349292 |||||| |||| | |||| |||||| ||||| ||||| |||||||| || || | | Sbjct 120926 GTGTTGGGGTTTTCAAGAATGGTCGTGTTGAAATTATTGCCAATGATCAGGGCAATCGGA 120985 Query 349293 CAACGCCATCATACGTTGCATTTACC---GAAACTGAGCGTATGATTGGTGATTCTGCAA 349349 || || || || || || ||||| ||| |||||| |||| || || | || | Sbjct 120986 TCACCCCGTCGTATGTAGCTTTTACGCCGGAAGGGGAGCGTCTGATCGGCGACGCCGCGA 121045 Query 349350 AAAATCAAGCTG-CTGCTAATCCAAAAAATACGGTTTTTGATGCTAAGCGACTTATTGGT 349408 ||||||| | || | ||||||| | |||||||| || || || ||||| | | ||| Sbjct 121046 AAAATCA-GTTGACCACTAATCCTGAGAATACGGTATTCGACGCAAAGCGTATGGTCGGT 121104 Query 349409 AGAAGTTTTTCTGACAAATCTACACAATCTGATCTAAAACATTTTCCTTTTACTGTTGTT 349468 || | || || || | ||| | |||| ||| | || ||| | || ||| Sbjct 121105 CGAGAATGGTCGGATAAGAGTCTTCAAGCGGATCGTAAAATGTGGCCATTTGCGGTGGTT 121164 Query 349469 CCAAAAGACGGTGATAAACCAATTATTGAGGTTGAATATAAAGGTGAACAAAAACAATTT 349528 |||| || | ||||| | || | || ||| |||||| | ||| || Sbjct 121165 GAAAAAT-CGA--ACAAACCGAACGTTCAACTTACTGTTAACGGTGAAAAGAAATTGTTC 121221 Query 349529 TTACCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATAT 349588 ||||||||||||||| | |||||||| | |||||||| |||||||| ||||| ||| Sbjct 121222 ACTCCCGAAGAAATTTCAGCGATGGTTTTGTTGAAAATGAAAGAAATTGCCGAAGCTTAT 121281 Query 349589 TTAGGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAG 349648 || || || ||| | |||| || | || || || || ||||| || ||||| || Sbjct 121282 TTGGGCAAAGAAGTGAAAAATGCCGTCGTCACCGTTCCCGCTTATTTCAACGATGCACAA 121341 Query 349649 CGTTCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAAT 349708 ||| || || |||||||| |||| |||||| || | |||||| | |||| || || Sbjct 121342 CGTCAAGCTACCAAAGATGCGGGCACCATTGCTGGTCTTAATGTTGTTCGAATCATCAAC 121401 Query 349709 GAACC 349713 ||||| Sbjct 121402 GAACC 121406 >seq2465 Length=325902 Score = 149 bits (164), Expect = 2e-30 Identities = 117/140 (84%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 |||||||| || | |||||||||||||| ||||| ||||| ||||| ||||||||| | Sbjct 17203 CCAGCAAATATCAATCGTTGCTGATCAGGCGGAATGCCTTCCTTATCTTGAATTTTACTT 17262 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 || ||||| ||||||| ||||||||| || ||||| | ||| | ||| ||||| |||| | Sbjct 17263 TTCACATTTTCAATCGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTAAT 17322 Query 140718 GTTTTTACAAAAATCTGCAT 140737 ||||| |||||||||||||| Sbjct 17323 GTTTTCACAAAAATCTGCAT 17342 Score = 136 bits (150), Expect = 1e-26 Identities = 116/143 (81%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 140595 TTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTA 140654 || || |||||||||| | |||||||||||||||||| ||||| ||||||||||||||| Sbjct 17878 TTACCTGCAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAATTTTA 17937 Query 140655 GCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTT 140714 ||| ||||| || || | || |||||||||||||| ||||| | || ||||| || Sbjct 17938 CTTTTAACATTTTCGATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAGTA 17997 Query 140715 AGTGTTTTTACAAAAATCTGCAT 140737 ||||| || || || |||||||| Sbjct 17998 AGTGTCTTCACGAATATCTGCAT 18020 Score = 129 bits (142), Expect = 2e-24 Identities = 117/145 (81%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 140595 TTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTA 140654 || |||||||| || | || ||||||||||| ||||| |||||||| || |||||||| Sbjct 16914 TTACCAGCAAATATCAATCGCTGCTGATCAGGTGGAATGCCTTCTTTGTCTTGAATTTT- 16972 Query 140655 GCTTTT-ACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGT 140713 |||||| ||||| ||||||| || || || || || || | ||| | ||| ||||| || Sbjct 16973 GCTTTTCACATTTTCAATCGTGTCCGAAGGCTCTACCTCCAATGTGATTGTTTTTCCAGT 17032 Query 140714 TAGTGTTTTTACAAAAATCTGCATT 140738 || |||||| ||||||||||||||| Sbjct 17033 TAATGTTTTCACAAAAATCTGCATT 17057 >seq1187 Length=25466 Score = 141 bits (156), Expect = 3e-28 Identities = 116/141 (82%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 |||||||| || |||||||||||||| || |||||||||||||||||||| ||||| || Sbjct 20990 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCCTGTATTTTCCCT 20931 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 || ||||| ||||| | |||||||||||| ||||| | ||| | || || || || || Sbjct 20930 TTCACATTTTCAATTGTATCAGATGGTTCCACTTCCAATGTGATGGTTTTGCCAGTGAGG 20871 Query 140718 GTTTTTACAAAAATCTGCATT 140738 || || |||||||| |||||| Sbjct 20870 GTCTTAACAAAAATTTGCATT 20850 Score = 141 bits (156), Expect = 3e-28 Identities = 116/141 (82%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 |||||||| || |||||||||||||| || |||||||||||||||||||| ||||| || Sbjct 21273 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCCTGTATTTTCCCT 21214 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 || ||||| ||||| | |||||||||||| ||||| | ||| | || || || || || Sbjct 21213 TTCACATTTTCAATTGTATCAGATGGTTCCACTTCCAATGTGATGGTTTTGCCAGTGAGG 21154 Query 140718 GTTTTTACAAAAATCTGCATT 140738 || || |||||||| |||||| Sbjct 21153 GTCTTAACAAAAATTTGCATT 21133 Score = 141 bits (156), Expect = 3e-28 Identities = 116/141 (82%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 |||||||| || |||||||||||||| || |||||||||||||||||||| ||||| || Sbjct 21556 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCCTGTATTTTCCCT 21497 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 || ||||| ||||| | |||||||||||| ||||| | ||| | || || || || || Sbjct 21496 TTCACATTTTCAATTGTATCAGATGGTTCCACTTCCAATGTGATGGTTTTGCCAGTGAGG 21437 Query 140718 GTTTTTACAAAAATCTGCATT 140738 || || |||||||| |||||| Sbjct 21436 GTCTTAACAAAAATTTGCATT 21416 Score = 141 bits (156), Expect = 3e-28 Identities = 116/141 (82%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 |||||||| || |||||||||||||| || ||||||||||| |||||||| ||||| || Sbjct 22124 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCCTTATCCTGTATTTTGCCT 22065 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 |||||||| || || | |||||||||||| ||||| | ||| | ||| ||||| || || Sbjct 22064 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAATGTTATTGTTTTTCCAGTAAGA 22005 Query 140718 GTTTTTACAAAAATCTGCATT 140738 || || || ||||| |||||| Sbjct 22004 GTCTTAACGAAAATTTGCATT 21984 Score = 138 bits (152), Expect = 3e-27 Identities = 115/141 (82%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 |||||||| || | |||||||||||| || |||||||||||||||||||| ||||| || Sbjct 22407 CCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCCTGTATTTTCCCT 22348 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 || ||||| ||||| | |||||||||||| ||||| | ||| | || || || || || Sbjct 22347 TTCACATTTTCAATTGTATCAGATGGTTCCACTTCCAATGTGATGGTTTTGCCAGTGAGG 22288 Query 140718 GTTTTTACAAAAATCTGCATT 140738 || || |||||||| |||||| Sbjct 22287 GTCTTAACAAAAATTTGCATT 22267 Score = 134 bits (148), Expect = 4e-26 Identities = 116/144 (81%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 140595 TTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTA 140654 || |||||||| || |||||||| ||||| || |||||||| |||||||||||||||||| Sbjct 20379 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 20320 Query 140655 GCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTT 140714 | || ||||| ||||| | || || || || ||||| ||||||| || || || || Sbjct 20319 CCCTTCACATTTTCAATGGTGTCTGAGGGCTCCACTTCCAGTGTAATGGTTTTCCCAGTC 20260 Query 140715 AGTGTTTTTACAAAAATCTGCATT 140738 || ||||| ||||| ||||||||| Sbjct 20259 AGAGTTTTGACAAATATCTGCATT 20236 Score = 129 bits (142), Expect = 2e-24 Identities = 113/141 (80%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 |||||||| || | |||||| ||||| || ||||||||||| |||||||| ||||| || Sbjct 21839 CCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTCCCT 21780 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 || ||||| ||||| | |||||||||||| ||||| | ||| | || || || || || Sbjct 21779 TTCACATTTTCAATTGTATCAGATGGTTCCACTTCCAATGTGATGGTTTTGCCAGTGAGG 21720 Query 140718 GTTTTTACAAAAATCTGCATT 140738 || || |||||||| |||||| Sbjct 21719 GTCTTAACAAAAATTTGCATT 21699 Score = 118 bits (130), Expect = 3e-21 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 |||||||| || || || || ||||| || || || |||||||| || ||||| || | Sbjct 20708 CCAGCAAAAATAAGCCGCTGTTGATCCGGTGGGATGCCTTCTTTGTCTTGAATCTTGCTT 20649 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 |||||||| ||||| | ||| || || |||||||||||||||| || ||||| || | Sbjct 20648 TTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCAAC 20589 Query 140718 GTTTTTACAAAAATCTGCAT 140737 ||||| ||||| |||||||| Sbjct 20588 GTTTTCACAAATATCTGCAT 20569 >seq827 Length=57960 Score = 138 bits (152), Expect = 3e-27 Identities = 115/141 (82%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 |||||||| || | |||||||||||| || |||||||||||||||||||| ||||| || Sbjct 55492 CCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCCTGTATTTTCCCT 55551 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 || ||||| ||||| | |||||||||||| ||||| | ||| | || || || || || Sbjct 55552 TTCACATTTTCAATTGTATCAGATGGTTCCACTTCCAATGTGATGGTTTTGCCAGTGAGG 55611 Query 140718 GTTTTTACAAAAATCTGCATT 140738 || || |||||||| |||||| Sbjct 55612 GTCTTAACAAAAATTTGCATT 55632 Score = 134 bits (148), Expect = 4e-26 Identities = 116/144 (81%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 140595 TTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTA 140654 || |||||||| || ||||| || ||||| || |||||||| |||||||||||||||||| Sbjct 31745 TTACCAGCAAAAATCAGACGCTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 31804 Query 140655 GCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTT 140714 |||| ||||| ||||| || || | ||||| ||||| || |||| || || || || Sbjct 31805 CCTTTCACATTTTCAATTGAGTCTAAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 31864 Query 140715 AGTGTTTTTACAAAAATCTGCATT 140738 || ||||| ||||| ||||||||| Sbjct 31865 AGAGTTTTCACAAATATCTGCATT 31888 Score = 125 bits (138), Expect = 2e-23 Identities = 116/147 (79%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 140592 TGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATT 140651 || || |||||||| || | |||||| ||||| || |||||||| |||||||| |||||| Sbjct 30774 TGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATT 30833 Query 140652 TTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCG 140711 || |||| ||||| || || | |||||||||||| ||||| | || | ||| ||||| Sbjct 30834 TTGCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCCA 30893 Query 140712 GTTAGTGTTTTTACAAAAATCTGCATT 140738 || || || || || ||||| |||||| Sbjct 30894 GTAAGGGTCTTAACGAAAATTTGCATT 30920 Score = 123 bits (136), Expect = 8e-23 Identities = 112/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 |||||||| || ||||| || ||||| ||||||||||| || ||||| ||||| || || Sbjct 29629 CCAGCAAAAATCAGACGCTGTTGATCTGGAGGAATTCCCTCCTTATCTTGAATCTTCCCT 29688 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 || ||||| |||| | |||||||||||| ||||| | || | ||||| || ||||| Sbjct 29689 TTCACATTCTCAACAGTATCAGATGGTTCCACTTCCAACGTGATGGTCTTCCCAGTTAGG 29748 Query 140718 GTTTTTACAAAAATCTGCATT 140738 || || |||||||| |||||| Sbjct 29749 GTCTTAACAAAAATTTGCATT 29769 Score = 122 bits (134), Expect = 3e-22 Identities = 111/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 |||||||| || || || || ||||| || || || |||||||| || ||||| || | Sbjct 31416 CCAGCAAAAATAAGCCGCTGTTGATCCGGTGGGATGCCTTCTTTGTCTTGAATCTTGCTT 31475 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 |||||||| ||||| | ||| ||||| |||||||||||||||| || ||||| || | Sbjct 31476 TTTACATTTTCAATTGTATCTGATGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCAAC 31535 Query 140718 GTTTTTACAAAAATCTGCAT 140737 ||||| ||||| |||||||| Sbjct 31536 GTTTTCACAAATATCTGCAT 31555 >seq2680 Length=639 Score = 134 bits (148), Expect = 4e-26 Identities = 173/239 (72%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 140499 ATATTTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATA 140558 ||| || | | ||||||||| | | || ||||| ||||| |||||||| || || ||| Sbjct 616 ATACTTCAGAAACCACCACGAAGACGGAGGACAAGGTGAAGGGTAGACTCCTTCTGGATA 557 Query 140559 TTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGC 140618 || || || | | || |||||||| || || || || || |||||||| || | ||| Sbjct 556 TTGTAGTCTGCCAGGGTACGCCCATCCTCGAGCTGCTTGCCGGCAAAGATAAGCCTCTGC 497 Query 140619 TGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCA 140678 || || || ||||| || || || || ||||| || || || ||||| ||||| | || Sbjct 496 TGGTCTGGTGGAATCCCCTCCTTGTCTTGAATCTTGGCCTTCACATTGTCAATGGTGTCT 437 Query 140679 GATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || ||||| || | ||||| || || || || || |||||||||||||| Sbjct 436 GAGCTCTCCACCTCAAGGGTGATGGTCTTCCCTGTAAGAGTCTTGACAAAAATCTGCAT 378 Score = 120 bits (132), Expect = 9e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || | |||||| || || || || || || || || || Sbjct 380 CATACCACCACGAAGACGAAGCACCAAATGAAGGGTGGATTCCTTCTGGATGTTGTAGTC 321 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 | | || || ||||| ||||| || ||||| |||||||| || | ||||| || || Sbjct 320 TGCCAGGGTACGGCCATCCTCAAGCTGCTTTCCGGCAAAGATAAGCCTCTGCTGGTCTGG 261 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || || || ||||| |||||||| || |||||||| || | || || || Sbjct 260 TGGGATACCCTCCTTGTCCTGGATTTTAGCCTTCACATTATCGATGGTGTCTGAGCTCTC 201 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || | || | ||||||||||| | || || ||||| |||||||| Sbjct 200 CACCTCCAAGGTGATGGTCTTTCCGGTCAAGGTCTTGACAAAGATCTGCAT 150 Score = 95.1 bits (104), Expect = 4e-14 Identities = 111/150 (74%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || | |||||| || || || || || || || ||||| Sbjct 152 CATACCACCACGGAGACGAAGCACCAAATGAAGGGTGGATTCCTTCTGGATGTTGTAATC 93 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 | | || || ||||| ||||| || ||||| |||||||| ||||| || || || || Sbjct 92 TGCCAGGGTGCGGCCATCCTCAAGCTGCTTTCCGGCAAAGATCAGACGCTGTTGGTCCGG 33 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGC 140656 || ||||| || || |||||||| || || Sbjct 32 GGGGATTCCCTCCTTGTCCTGAATCTTGGC 3 >seq378 Length=398 Score = 129 bits (142), Expect = 2e-24 Identities = 113/141 (80%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 |||||||| || | |||||||||||| || ||||||||||| |||||||| ||||| || Sbjct 254 CCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCCTTATCCTGTATTTTGCCT 195 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 |||||||| || || | |||||||||||| ||||| | || | || || ||||| || Sbjct 194 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAAGA 135 Query 140718 GTTTTTACAAAAATCTGCATT 140738 || || || ||||| |||||| Sbjct 134 GTCTTAACGAAAATTTGCATT 114 >seq11 Length=460 Score = 125 bits (138), Expect = 2e-23 Identities = 114/144 (79%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 140595 TTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTA 140654 || |||||||| || | |||||| ||||| || ||||||||||| |||||||| ||||| Sbjct 202 TTACCAGCAAATATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTG 143 Query 140655 GCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTT 140714 |||||||||| || || | |||||||||||| ||||| | || | || || ||||| Sbjct 142 CCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTA 83 Query 140715 AGTGTTTTTACAAAAATCTGCATT 140738 || || || || ||||| |||||| Sbjct 82 AGAGTCTTAACGAAAATTTGCATT 59 Score = 98.7 bits (108), Expect = 3e-15 Identities = 90/114 (79%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 140625 GGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGT 140684 || ||||||||||| |||||||| ||||| |||||||||| || || | |||||||||| Sbjct 460 GGTGGAATTCCTTCCTTATCCTGTATTTTGCCTTTTACATTCTCTATTGTATCAGATGGT 401 Query 140685 TCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738 || ||||| | || | || || ||||| || || || || ||||| |||||| Sbjct 400 TCTACTTCCAAGGTGATCGTTTTGCCGGTAAGAGTCTTAACGAAAATTTGCATT 347 >seq1696 Length=245 Score = 105 bits (116), Expect = 2e-17 Identities = 82/98 (84%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 140595 TTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTA 140654 || |||||||| || | |||||| ||||| || |||||||||||||||||||| ||||| Sbjct 113 TTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCTTTATCCTGTATTTTG 54 Query 140655 GCTTTTACATTATCAATCGAATCAGATGGTTCAACTTC 140692 | |||||||| || || | |||||||||||| ||||| Sbjct 53 CCCTTTACATTCTCTATTGTATCAGATGGTTCTACTTC 16 >seq2706 Length=224770 Score = 98.7 bits (108), Expect = 3e-15 Identities = 75/89 (84%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 140548 CTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGA 140607 |||| |||||||| ||||| || || || || ||||||||||| |||||||||||||| | Sbjct 73386 CTTTCTGAATATTGTAATCGGACAAAGTACGTCCATCTTCAAGCTGTTTTCCAGCAAAAA 73327 Query 140608 TTAGACGTTGCTGATCAGGAGGAATTCCT 140636 | || || ||||||||||| ||||| ||| Sbjct 73326 TCAGTCGCTGCTGATCAGGTGGAATCCCT 73298 Score = 89.7 bits (98), Expect = 2e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 140634 CCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCA 140693 ||||| || |||||||||||||| || ||||| | ||| | |||||| || || ||||| Sbjct 73251 CCTTCCTTGTCCTGAATTTTAGCCTTCACATTCTGAATTGTATCAGAAGGCTCTACTTCC 73192 Query 140694 AGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | || | |||||||| ||||| ||||| ||||| || ||||| Sbjct 73191 AAAGTGATGGTCTTTCCTGTTAGAGTTTTCACAAATATTTGCAT 73148 >seq2741 Length=215489 Score = 89.7 bits (98), Expect = 2e-12 Identities = 111/152 (73%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 266973 ATCGGCGATAAATTTTCTAGTCGCCACGGACAAAAAGGTACCATTGGTACGATTATTCCT 267032 || || || |||||| | ||||| ||||| || || || |||||||| | ||| || | Sbjct 83560 ATAGGTGACAAATTTGCCAGTCGTCACGGTCAGAAGGGCACCATTGGGATGATATATCGT 83501 Query 267033 GAAGAAAATATGCCATTTAATGAAGATGGAATTAGACCTGATATTATTATTAATCCTCAT 267092 |||| | |||||||| | || || || | || || ||||| || ||||| || Sbjct 83500 CAAGAGGACATGCCATTCACGTGCGAAGGCATCACGCCAGACATTATAATCAATCCACAC 83441 Query 267093 GCTATTCCTAGTCGTATGACAATTGGTCAATT 267124 || ||||||||||| ||||| |||||||| || Sbjct 83440 GCAATTCCTAGTCGAATGACCATTGGTCATTT 83409 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515196759249107