Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20nelsoni_20[genbank_20GCA_5F001447455.1_202015-11-24]
2,969 sequences; 47,436,005 total letters
Query= NC_028094.1
Length=473558
Score E
Sequences producing significant alignments: (Bits) Value
seq2516 378 2e-99
seq2371 152 2e-31
seq2465 149 2e-30
seq1187 141 3e-28
seq827 138 3e-27
seq2680 134 4e-26
seq378 129 2e-24
seq11 125 2e-23
seq1696 105 2e-17
seq2706 98.7 3e-15
seq2741 89.7 2e-12
>seq2516
Length=768920
Score = 378 bits (418), Expect = 2e-99
Identities = 568/804 (71%), Gaps = 5/804 (1%)
Strand=Plus/Minus
Query 349199 GCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGT 349258
||||| ||||| ||||| |||||||| || |||||||| || | || ||| |
Sbjct 551782 GCTATTGGAATTGATTTGGGTACTACCTACAGTTGTGTTGGCGTGTTCCAGCATGGTAAA 551723
Query 349259 GTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACC 349318
|| ||||| ||||| || |||||||| || | || |||||| || ||||| || |||
Sbjct 551722 GTTGAAATTATTGCCAACGATCAAGGGAATCGTACCACGCCAAGTTATGTTGCTTTCACC 551663
Query 349319 GAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAAT 349378
|| || ||||| ||||||| ||| | ||||||||||||| ||| ||||| | |||
Sbjct 551662 GATACCGAGCGACTGATTGGAGATGCGGCAAAAAATCAAGTTGCGTTGAATCCTCATAAT 551603
Query 349379 ACGGTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGACAAATCTACACAATCT 349438
|| ||||||||||| |||||||| || ||| | | ||| ||| | || |||
Sbjct 551602 ACAGTTTTTGATGCGAAGCGACTCATCGGTCGTCGATTTGATGATGCTGCGGTGCAGTCT 551543
Query 349439 GATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAG 349498
||| | ||||||| || || | ||| | || || || ||||| | ||| |
Sbjct 551542 GATATGAAACATTGGCCATTCAAAGTTATC---AACGATGGATCGAAACCTAAAATTCAA 551486
Query 349499 GTTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTTA 349558
|| ||||| ||||| || || |||| |||||||||||| | ||||| |||
Sbjct 551485 GTCGAATACAAAGGCGAGTCGAAGTCATTTACACCCGAAGAAATCAGTGCTATGGTGTTA 551426
Query 349559 GTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATT 349618
|| || |||||||||| ||| ||||| ||||| || |||| || | ||||| || |||
Sbjct 551425 GTGAAGATGAAGGAAACTGCCGAAGCTTATTTGGGAAAAACTGTTAAGGATGCCGTAATT 551366
Query 349619 ACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATT 349678
||||| || || |||||||| ||| | |||||| || || ||||| ||||| | |||
Sbjct 551365 ACTGTTCCGGCATATTTTAACGATTCTCAGCGTCAGGCGACCAAAGACGCTGGAACGATT 551306
Query 349679 GCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGG 349738
| || || |||||| | | || || || ||||| || || || |||||||| |||||
Sbjct 551305 TCTGGTTTGAATGTTTTGCGTATCATCAACGAACCAACAGCGGCTGCAATTGCTTATGGA 551246
Query 349739 CTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACT 349798
||||||| || | ||| | ||| |||| |||| || ||||| | ||||||||||||
Sbjct 551245 CTTGATAGAAAGGGTGGCGGTGAACGAAATGTTCTGATATTTGACCTTGGTGGTGGTACT 551186
Query 349799 TTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGT 349858
|||||||| || | | || | ||||| || |||||||| || || | || ||||||
Sbjct 551185 TTTGATGTGTCTATTTTGACCATCGAAGATGGCATTTTTGAGGTCAAGTCTACCGCTGGT 551126
Query 349859 GATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAA 349918
|| || ||| | ||||| || || || || ||||| | || ||||| || ||
Sbjct 551125 GACACTCATTTGGGTGGTGAGGACTTCGACAATCGAATGGTAAATCATTTCGTGGCTGAG 551066
Query 349919 TTTAAGCGTCAAG-CTAAAATTGATATTGGAGATAATCCTAGAGCAATGCGTCGCCTAAG 349977
|||||||| |||| || | || || | |||||| | ||| |||||||| | |
Sbjct 551065 TTTAAGCG-CAAGAACAAGAAGGACATGTCATCTAATCCACGCGCATTGCGTCGCTTGCG 551007
Query 349978 AACTGCGTGTGAACGTGCTAAGCG 350001
|| || |||||||| || |||||
Sbjct 551006 CACAGCTTGTGAACGAGCGAAGCG 550983
Score = 105 bits (116), Expect = 2e-17
Identities = 156/221 (71%), Gaps = 0/221 (0%)
Strand=Plus/Plus
Query 183570 TTAGCTCGTTCACATGCTGTTCTTAGTCGACGTAATGATCTTGGATTATCTGTAATATCT 183629
|| ||||||||||| ||||| | | ||||| |||| | ||||||| || || ||
Sbjct 550986 TTCGCTCGTTCACAAGCTGTGCGCAAGCGACGCAATGCGCGTGGATTAGATGACATGTCC 551045
Query 183630 TGTTTATGTTTTCTTTTAAATTCAGTAATAAAATGTTGAAGTAATCTTGTATCAAAATCT 183689
| || | || | ||||| |||| | ||||| | | | || | || || ||
Sbjct 551046 TTCTTGTTCTTGCGCTTAAACTCAGCCACGAAATGATTTACCATTCGATTGTCGAAGTCC 551105
Query 183690 TCACCACCTAAATGTGTATCGCCAGCAGTAGCTTTAACTTCAAATATTCCGTCTTCAATA 183749
|||||||| ||||| || || ||||| |||| || || ||||| || || ||||| ||
Sbjct 551106 TCACCACCCAAATGAGTGTCACCAGCGGTAGACTTGACCTCAAAAATGCCATCTTCGATG 551165
Query 183750 TTTAAAATTGATACATCAAATGTACCACCACCCAAATCAAA 183790
| ||||| || |||||||| ||||||||||| | |||||
Sbjct 551166 GTCAAAATAGACACATCAAAAGTACCACCACCAAGGTCAAA 551206
Score = 102 bits (112), Expect = 2e-16
Identities = 190/277 (69%), Gaps = 4/277 (1%)
Strand=Plus/Minus
Query 350030 ATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGG 350089
|||||||||||| || || |||| ||||||| | ||||||| | |||||
Sbjct 550899 ATTGAAATTGATAGCCTCTACGAAGGCATTGATTTCTACACCACTATTACCAGAGCTCGC 550840
Query 350090 TTTGAAGAATTATGTATG--GATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAGTAT 350147
|| ||||| || | ||| || | || | | || |||| || || |||||||
Sbjct 550839 TTCGAAGAGTT--GAATGCTGACTTGTTCCGTTCTACTTTGGAACCAGTAGAAAAAGCTC 550782
Query 350148 TAAAAGATGCAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTTCTA 350207
| || || ||| | |||| |||| ||||||| ||||| || ||||| ||||
Sbjct 550781 TTCGTGACGCGAAATTAGACAAAGCAGTGATTCATGAAGTTGTTTTGGTGGGTGGATCTA 550722
Query 350208 CACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAACCTTCTA 350267
| || ||||| |||||||| |||| | || ||||||||||| ||||||| | |
Sbjct 550721 CTCGCATTCCTAAAGTTCAGAAGTTGTTGCAAGATTTTTTTAATGGGAAAGAACTTAACA 550662
Query 350268 GATCAATTAATCCAGATGAAGCTGTTGCATATGGTGC 350304
| || |||||||| ||||||||||| ||||| ||
Sbjct 550661 AAAGCATCAATCCAGACGAAGCTGTTGCCTATGGAGC 550625
Score = 84.2 bits (92), Expect = 7e-11
Identities = 189/279 (68%), Gaps = 4/279 (1%)
Strand=Plus/Plus
Query 183262 CTGCACCATATGCAACAGCTTCATCTGGGTTAATTGAACGAGATAA-TTCTTTGCCATTA 183320
|||| ||||| ||||||||||| ||||| || || | | ||| |||||| ||||||
Sbjct 550623 CTGCTCCATAGGCAACAGCTTCGTCTGGATTGAT-GCTTTTGTTAAGTTCTTTCCCATTA 550681
Query 183321 AAAAATTCTGAAAGCATTTGTTGAATTTTTGGAATTCTAGTTGAACCACCGACTAATACT 183380
||||| ||| | || | |||| ||| ||||| | ||| || ||||| || || ||
Sbjct 550682 AAAAAATCTTGCAACAACTTCTGAACTTTAGGAATGCGAGTAGATCCACCCACCAAAACA 550741
Query 183381 ACTTCATCGAT-ATTACTTTTACTAATTTGTGAATCTTTTAAAACTTTTTCAACAGGGTC 183439
||||||| || | | |||| ||||||| | || | | ||||||| || || ||
Sbjct 550742 ACTTCATGAATCACTGCTTTGTCTAATTT-CGCGTCACGAAGAGCTTTTTCTACTGGTTC 550800
Query 183440 CATAGTTTTTCTAAATAAATCTATACATAACTCTTCTAATCTTGCTCTAGTTAAAGATGa 183499
|| ||| | || || || | |||||||| || | ||||| || | || |
Sbjct 550801 CAAAGTAGAACGGAACAAGTCAGCATTCAACTCTTCGAAGCGAGCTCTGGTAATAGTGGT 550860
Query 183500 aaaaaaGTCAATACCATTATATAAGGAATCAATTTCAAT 183538
| || ||||| || | || | | ||||||||||||
Sbjct 550861 GTAGAAATCAATGCCTTCGTAGAGGCTATCAATTTCAAT 550899
>seq2371
Length=372962
Score = 152 bits (168), Expect = 2e-31
Identities = 328/485 (68%), Gaps = 8/485 (2%)
Strand=Plus/Plus
Query 349233 GTGTTGCTGTTTGGCAAAATGATCGTGTAGAAATAATTGCAAATGATCAAGGTAACAGAA 349292
|||||| |||| | |||| |||||| ||||| ||||| |||||||| || || | |
Sbjct 120926 GTGTTGGGGTTTTCAAGAATGGTCGTGTTGAAATTATTGCCAATGATCAGGGCAATCGGA 120985
Query 349293 CAACGCCATCATACGTTGCATTTACC---GAAACTGAGCGTATGATTGGTGATTCTGCAA 349349
|| || || || || || ||||| ||| |||||| |||| || || | || |
Sbjct 120986 TCACCCCGTCGTATGTAGCTTTTACGCCGGAAGGGGAGCGTCTGATCGGCGACGCCGCGA 121045
Query 349350 AAAATCAAGCTG-CTGCTAATCCAAAAAATACGGTTTTTGATGCTAAGCGACTTATTGGT 349408
||||||| | || | ||||||| | |||||||| || || || ||||| | | |||
Sbjct 121046 AAAATCA-GTTGACCACTAATCCTGAGAATACGGTATTCGACGCAAAGCGTATGGTCGGT 121104
Query 349409 AGAAGTTTTTCTGACAAATCTACACAATCTGATCTAAAACATTTTCCTTTTACTGTTGTT 349468
|| | || || || | ||| | |||| ||| | || ||| | || |||
Sbjct 121105 CGAGAATGGTCGGATAAGAGTCTTCAAGCGGATCGTAAAATGTGGCCATTTGCGGTGGTT 121164
Query 349469 CCAAAAGACGGTGATAAACCAATTATTGAGGTTGAATATAAAGGTGAACAAAAACAATTT 349528
|||| || | ||||| | || | || ||| |||||| | ||| ||
Sbjct 121165 GAAAAAT-CGA--ACAAACCGAACGTTCAACTTACTGTTAACGGTGAAAAGAAATTGTTC 121221
Query 349529 TTACCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATAT 349588
||||||||||||||| | |||||||| | |||||||| |||||||| ||||| |||
Sbjct 121222 ACTCCCGAAGAAATTTCAGCGATGGTTTTGTTGAAAATGAAAGAAATTGCCGAAGCTTAT 121281
Query 349589 TTAGGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAG 349648
|| || || ||| | |||| || | || || || || ||||| || ||||| ||
Sbjct 121282 TTGGGCAAAGAAGTGAAAAATGCCGTCGTCACCGTTCCCGCTTATTTCAACGATGCACAA 121341
Query 349649 CGTTCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAAT 349708
||| || || |||||||| |||| |||||| || | |||||| | |||| || ||
Sbjct 121342 CGTCAAGCTACCAAAGATGCGGGCACCATTGCTGGTCTTAATGTTGTTCGAATCATCAAC 121401
Query 349709 GAACC 349713
|||||
Sbjct 121402 GAACC 121406
>seq2465
Length=325902
Score = 149 bits (164), Expect = 2e-30
Identities = 117/140 (84%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657
|||||||| || | |||||||||||||| ||||| ||||| ||||| ||||||||| |
Sbjct 17203 CCAGCAAATATCAATCGTTGCTGATCAGGCGGAATGCCTTCCTTATCTTGAATTTTACTT 17262
Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717
|| ||||| ||||||| ||||||||| || ||||| | ||| | ||| ||||| |||| |
Sbjct 17263 TTCACATTTTCAATCGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTAAT 17322
Query 140718 GTTTTTACAAAAATCTGCAT 140737
||||| ||||||||||||||
Sbjct 17323 GTTTTCACAAAAATCTGCAT 17342
Score = 136 bits (150), Expect = 1e-26
Identities = 116/143 (81%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 140595 TTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTA 140654
|| || |||||||||| | |||||||||||||||||| ||||| |||||||||||||||
Sbjct 17878 TTACCTGCAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAATTTTA 17937
Query 140655 GCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTT 140714
||| ||||| || || | || |||||||||||||| ||||| | || ||||| ||
Sbjct 17938 CTTTTAACATTTTCGATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAGTA 17997
Query 140715 AGTGTTTTTACAAAAATCTGCAT 140737
||||| || || || ||||||||
Sbjct 17998 AGTGTCTTCACGAATATCTGCAT 18020
Score = 129 bits (142), Expect = 2e-24
Identities = 117/145 (81%), Gaps = 2/145 (1%)
Strand=Plus/Plus
Query 140595 TTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTA 140654
|| |||||||| || | || ||||||||||| ||||| |||||||| || ||||||||
Sbjct 16914 TTACCAGCAAATATCAATCGCTGCTGATCAGGTGGAATGCCTTCTTTGTCTTGAATTTT- 16972
Query 140655 GCTTTT-ACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGT 140713
|||||| ||||| ||||||| || || || || || || | ||| | ||| ||||| ||
Sbjct 16973 GCTTTTCACATTTTCAATCGTGTCCGAAGGCTCTACCTCCAATGTGATTGTTTTTCCAGT 17032
Query 140714 TAGTGTTTTTACAAAAATCTGCATT 140738
|| |||||| |||||||||||||||
Sbjct 17033 TAATGTTTTCACAAAAATCTGCATT 17057
>seq1187
Length=25466
Score = 141 bits (156), Expect = 3e-28
Identities = 116/141 (82%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657
|||||||| || |||||||||||||| || |||||||||||||||||||| ||||| ||
Sbjct 20990 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCCTGTATTTTCCCT 20931
Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717
|| ||||| ||||| | |||||||||||| ||||| | ||| | || || || || ||
Sbjct 20930 TTCACATTTTCAATTGTATCAGATGGTTCCACTTCCAATGTGATGGTTTTGCCAGTGAGG 20871
Query 140718 GTTTTTACAAAAATCTGCATT 140738
|| || |||||||| ||||||
Sbjct 20870 GTCTTAACAAAAATTTGCATT 20850
Score = 141 bits (156), Expect = 3e-28
Identities = 116/141 (82%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657
|||||||| || |||||||||||||| || |||||||||||||||||||| ||||| ||
Sbjct 21273 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCCTGTATTTTCCCT 21214
Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717
|| ||||| ||||| | |||||||||||| ||||| | ||| | || || || || ||
Sbjct 21213 TTCACATTTTCAATTGTATCAGATGGTTCCACTTCCAATGTGATGGTTTTGCCAGTGAGG 21154
Query 140718 GTTTTTACAAAAATCTGCATT 140738
|| || |||||||| ||||||
Sbjct 21153 GTCTTAACAAAAATTTGCATT 21133
Score = 141 bits (156), Expect = 3e-28
Identities = 116/141 (82%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657
|||||||| || |||||||||||||| || |||||||||||||||||||| ||||| ||
Sbjct 21556 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCCTGTATTTTCCCT 21497
Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717
|| ||||| ||||| | |||||||||||| ||||| | ||| | || || || || ||
Sbjct 21496 TTCACATTTTCAATTGTATCAGATGGTTCCACTTCCAATGTGATGGTTTTGCCAGTGAGG 21437
Query 140718 GTTTTTACAAAAATCTGCATT 140738
|| || |||||||| ||||||
Sbjct 21436 GTCTTAACAAAAATTTGCATT 21416
Score = 141 bits (156), Expect = 3e-28
Identities = 116/141 (82%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657
|||||||| || |||||||||||||| || ||||||||||| |||||||| ||||| ||
Sbjct 22124 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCCTTATCCTGTATTTTGCCT 22065
Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717
|||||||| || || | |||||||||||| ||||| | ||| | ||| ||||| || ||
Sbjct 22064 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAATGTTATTGTTTTTCCAGTAAGA 22005
Query 140718 GTTTTTACAAAAATCTGCATT 140738
|| || || ||||| ||||||
Sbjct 22004 GTCTTAACGAAAATTTGCATT 21984
Score = 138 bits (152), Expect = 3e-27
Identities = 115/141 (82%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657
|||||||| || | |||||||||||| || |||||||||||||||||||| ||||| ||
Sbjct 22407 CCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCCTGTATTTTCCCT 22348
Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717
|| ||||| ||||| | |||||||||||| ||||| | ||| | || || || || ||
Sbjct 22347 TTCACATTTTCAATTGTATCAGATGGTTCCACTTCCAATGTGATGGTTTTGCCAGTGAGG 22288
Query 140718 GTTTTTACAAAAATCTGCATT 140738
|| || |||||||| ||||||
Sbjct 22287 GTCTTAACAAAAATTTGCATT 22267
Score = 134 bits (148), Expect = 4e-26
Identities = 116/144 (81%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 140595 TTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTA 140654
|| |||||||| || |||||||| ||||| || |||||||| ||||||||||||||||||
Sbjct 20379 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 20320
Query 140655 GCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTT 140714
| || ||||| ||||| | || || || || ||||| ||||||| || || || ||
Sbjct 20319 CCCTTCACATTTTCAATGGTGTCTGAGGGCTCCACTTCCAGTGTAATGGTTTTCCCAGTC 20260
Query 140715 AGTGTTTTTACAAAAATCTGCATT 140738
|| ||||| ||||| |||||||||
Sbjct 20259 AGAGTTTTGACAAATATCTGCATT 20236
Score = 129 bits (142), Expect = 2e-24
Identities = 113/141 (80%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657
|||||||| || | |||||| ||||| || ||||||||||| |||||||| ||||| ||
Sbjct 21839 CCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTCCCT 21780
Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717
|| ||||| ||||| | |||||||||||| ||||| | ||| | || || || || ||
Sbjct 21779 TTCACATTTTCAATTGTATCAGATGGTTCCACTTCCAATGTGATGGTTTTGCCAGTGAGG 21720
Query 140718 GTTTTTACAAAAATCTGCATT 140738
|| || |||||||| ||||||
Sbjct 21719 GTCTTAACAAAAATTTGCATT 21699
Score = 118 bits (130), Expect = 3e-21
Identities = 110/140 (79%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657
|||||||| || || || || ||||| || || || |||||||| || ||||| || |
Sbjct 20708 CCAGCAAAAATAAGCCGCTGTTGATCCGGTGGGATGCCTTCTTTGTCTTGAATCTTGCTT 20649
Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717
|||||||| ||||| | ||| || || |||||||||||||||| || ||||| || |
Sbjct 20648 TTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCAAC 20589
Query 140718 GTTTTTACAAAAATCTGCAT 140737
||||| ||||| ||||||||
Sbjct 20588 GTTTTCACAAATATCTGCAT 20569
>seq827
Length=57960
Score = 138 bits (152), Expect = 3e-27
Identities = 115/141 (82%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657
|||||||| || | |||||||||||| || |||||||||||||||||||| ||||| ||
Sbjct 55492 CCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCCTGTATTTTCCCT 55551
Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717
|| ||||| ||||| | |||||||||||| ||||| | ||| | || || || || ||
Sbjct 55552 TTCACATTTTCAATTGTATCAGATGGTTCCACTTCCAATGTGATGGTTTTGCCAGTGAGG 55611
Query 140718 GTTTTTACAAAAATCTGCATT 140738
|| || |||||||| ||||||
Sbjct 55612 GTCTTAACAAAAATTTGCATT 55632
Score = 134 bits (148), Expect = 4e-26
Identities = 116/144 (81%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 140595 TTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTA 140654
|| |||||||| || ||||| || ||||| || |||||||| ||||||||||||||||||
Sbjct 31745 TTACCAGCAAAAATCAGACGCTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 31804
Query 140655 GCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTT 140714
|||| ||||| ||||| || || | ||||| ||||| || |||| || || || ||
Sbjct 31805 CCTTTCACATTTTCAATTGAGTCTAAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 31864
Query 140715 AGTGTTTTTACAAAAATCTGCATT 140738
|| ||||| ||||| |||||||||
Sbjct 31865 AGAGTTTTCACAAATATCTGCATT 31888
Score = 125 bits (138), Expect = 2e-23
Identities = 116/147 (79%), Gaps = 0/147 (0%)
Strand=Plus/Plus
Query 140592 TGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATT 140651
|| || |||||||| || | |||||| ||||| || |||||||| |||||||| ||||||
Sbjct 30774 TGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATT 30833
Query 140652 TTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCG 140711
|| |||| ||||| || || | |||||||||||| ||||| | || | ||| |||||
Sbjct 30834 TTGCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCCA 30893
Query 140712 GTTAGTGTTTTTACAAAAATCTGCATT 140738
|| || || || || ||||| ||||||
Sbjct 30894 GTAAGGGTCTTAACGAAAATTTGCATT 30920
Score = 123 bits (136), Expect = 8e-23
Identities = 112/141 (79%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657
|||||||| || ||||| || ||||| ||||||||||| || ||||| ||||| || ||
Sbjct 29629 CCAGCAAAAATCAGACGCTGTTGATCTGGAGGAATTCCCTCCTTATCTTGAATCTTCCCT 29688
Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717
|| ||||| |||| | |||||||||||| ||||| | || | ||||| || |||||
Sbjct 29689 TTCACATTCTCAACAGTATCAGATGGTTCCACTTCCAACGTGATGGTCTTCCCAGTTAGG 29748
Query 140718 GTTTTTACAAAAATCTGCATT 140738
|| || |||||||| ||||||
Sbjct 29749 GTCTTAACAAAAATTTGCATT 29769
Score = 122 bits (134), Expect = 3e-22
Identities = 111/140 (79%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657
|||||||| || || || || ||||| || || || |||||||| || ||||| || |
Sbjct 31416 CCAGCAAAAATAAGCCGCTGTTGATCCGGTGGGATGCCTTCTTTGTCTTGAATCTTGCTT 31475
Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717
|||||||| ||||| | ||| ||||| |||||||||||||||| || ||||| || |
Sbjct 31476 TTTACATTTTCAATTGTATCTGATGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCAAC 31535
Query 140718 GTTTTTACAAAAATCTGCAT 140737
||||| ||||| ||||||||
Sbjct 31536 GTTTTCACAAATATCTGCAT 31555
>seq2680
Length=639
Score = 134 bits (148), Expect = 4e-26
Identities = 173/239 (72%), Gaps = 0/239 (0%)
Strand=Plus/Minus
Query 140499 ATATTTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATA 140558
||| || | | ||||||||| | | || ||||| ||||| |||||||| || || |||
Sbjct 616 ATACTTCAGAAACCACCACGAAGACGGAGGACAAGGTGAAGGGTAGACTCCTTCTGGATA 557
Query 140559 TTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGC 140618
|| || || | | || |||||||| || || || || || |||||||| || | |||
Sbjct 556 TTGTAGTCTGCCAGGGTACGCCCATCCTCGAGCTGCTTGCCGGCAAAGATAAGCCTCTGC 497
Query 140619 TGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCA 140678
|| || || ||||| || || || || ||||| || || || ||||| ||||| | ||
Sbjct 496 TGGTCTGGTGGAATCCCCTCCTTGTCTTGAATCTTGGCCTTCACATTGTCAATGGTGTCT 437
Query 140679 GATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
|| || || ||||| || | ||||| || || || || || ||||||||||||||
Sbjct 436 GAGCTCTCCACCTCAAGGGTGATGGTCTTCCCTGTAAGAGTCTTGACAAAAATCTGCAT 378
Score = 120 bits (132), Expect = 9e-22
Identities = 165/231 (71%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
|||||||||||| | | || || | |||||| || || || || || || || || ||
Sbjct 380 CATACCACCACGAAGACGAAGCACCAAATGAAGGGTGGATTCCTTCTGGATGTTGTAGTC 321
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
| | || || ||||| ||||| || ||||| |||||||| || | ||||| || ||
Sbjct 320 TGCCAGGGTACGGCCATCCTCAAGCTGCTTTCCGGCAAAGATAAGCCTCTGCTGGTCTGG 261
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686
|| || || || || ||||| |||||||| || |||||||| || | || || ||
Sbjct 260 TGGGATACCCTCCTTGTCCTGGATTTTAGCCTTCACATTATCGATGGTGTCTGAGCTCTC 201
Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
|| || | || | ||||||||||| | || || ||||| ||||||||
Sbjct 200 CACCTCCAAGGTGATGGTCTTTCCGGTCAAGGTCTTGACAAAGATCTGCAT 150
Score = 95.1 bits (104), Expect = 4e-14
Identities = 111/150 (74%), Gaps = 0/150 (0%)
Strand=Plus/Minus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
|||||||||||| | | || || | |||||| || || || || || || || |||||
Sbjct 152 CATACCACCACGGAGACGAAGCACCAAATGAAGGGTGGATTCCTTCTGGATGTTGTAATC 93
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
| | || || ||||| ||||| || ||||| |||||||| ||||| || || || ||
Sbjct 92 TGCCAGGGTGCGGCCATCCTCAAGCTGCTTTCCGGCAAAGATCAGACGCTGTTGGTCCGG 33
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGC 140656
|| ||||| || || |||||||| || ||
Sbjct 32 GGGGATTCCCTCCTTGTCCTGAATCTTGGC 3
>seq378
Length=398
Score = 129 bits (142), Expect = 2e-24
Identities = 113/141 (80%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657
|||||||| || | |||||||||||| || ||||||||||| |||||||| ||||| ||
Sbjct 254 CCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCCTTATCCTGTATTTTGCCT 195
Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717
|||||||| || || | |||||||||||| ||||| | || | || || ||||| ||
Sbjct 194 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAAGA 135
Query 140718 GTTTTTACAAAAATCTGCATT 140738
|| || || ||||| ||||||
Sbjct 134 GTCTTAACGAAAATTTGCATT 114
>seq11
Length=460
Score = 125 bits (138), Expect = 2e-23
Identities = 114/144 (79%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 140595 TTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTA 140654
|| |||||||| || | |||||| ||||| || ||||||||||| |||||||| |||||
Sbjct 202 TTACCAGCAAATATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTG 143
Query 140655 GCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTT 140714
|||||||||| || || | |||||||||||| ||||| | || | || || |||||
Sbjct 142 CCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTA 83
Query 140715 AGTGTTTTTACAAAAATCTGCATT 140738
|| || || || ||||| ||||||
Sbjct 82 AGAGTCTTAACGAAAATTTGCATT 59
Score = 98.7 bits (108), Expect = 3e-15
Identities = 90/114 (79%), Gaps = 0/114 (0%)
Strand=Plus/Minus
Query 140625 GGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGT 140684
|| ||||||||||| |||||||| ||||| |||||||||| || || | ||||||||||
Sbjct 460 GGTGGAATTCCTTCCTTATCCTGTATTTTGCCTTTTACATTCTCTATTGTATCAGATGGT 401
Query 140685 TCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738
|| ||||| | || | || || ||||| || || || || ||||| ||||||
Sbjct 400 TCTACTTCCAAGGTGATCGTTTTGCCGGTAAGAGTCTTAACGAAAATTTGCATT 347
>seq1696
Length=245
Score = 105 bits (116), Expect = 2e-17
Identities = 82/98 (84%), Gaps = 0/98 (0%)
Strand=Plus/Minus
Query 140595 TTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTA 140654
|| |||||||| || | |||||| ||||| || |||||||||||||||||||| |||||
Sbjct 113 TTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCTTTATCCTGTATTTTG 54
Query 140655 GCTTTTACATTATCAATCGAATCAGATGGTTCAACTTC 140692
| |||||||| || || | |||||||||||| |||||
Sbjct 53 CCCTTTACATTCTCTATTGTATCAGATGGTTCTACTTC 16
>seq2706
Length=224770
Score = 98.7 bits (108), Expect = 3e-15
Identities = 75/89 (84%), Gaps = 0/89 (0%)
Strand=Plus/Minus
Query 140548 CTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGA 140607
|||| |||||||| ||||| || || || || ||||||||||| |||||||||||||| |
Sbjct 73386 CTTTCTGAATATTGTAATCGGACAAAGTACGTCCATCTTCAAGCTGTTTTCCAGCAAAAA 73327
Query 140608 TTAGACGTTGCTGATCAGGAGGAATTCCT 140636
| || || ||||||||||| ||||| |||
Sbjct 73326 TCAGTCGCTGCTGATCAGGTGGAATCCCT 73298
Score = 89.7 bits (98), Expect = 2e-12
Identities = 82/104 (79%), Gaps = 0/104 (0%)
Strand=Plus/Minus
Query 140634 CCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCA 140693
||||| || |||||||||||||| || ||||| | ||| | |||||| || || |||||
Sbjct 73251 CCTTCCTTGTCCTGAATTTTAGCCTTCACATTCTGAATTGTATCAGAAGGCTCTACTTCC 73192
Query 140694 AGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
| || | |||||||| ||||| ||||| ||||| || |||||
Sbjct 73191 AAAGTGATGGTCTTTCCTGTTAGAGTTTTCACAAATATTTGCAT 73148
>seq2741
Length=215489
Score = 89.7 bits (98), Expect = 2e-12
Identities = 111/152 (73%), Gaps = 0/152 (0%)
Strand=Plus/Minus
Query 266973 ATCGGCGATAAATTTTCTAGTCGCCACGGACAAAAAGGTACCATTGGTACGATTATTCCT 267032
|| || || |||||| | ||||| ||||| || || || |||||||| | ||| || |
Sbjct 83560 ATAGGTGACAAATTTGCCAGTCGTCACGGTCAGAAGGGCACCATTGGGATGATATATCGT 83501
Query 267033 GAAGAAAATATGCCATTTAATGAAGATGGAATTAGACCTGATATTATTATTAATCCTCAT 267092
|||| | |||||||| | || || || | || || ||||| || ||||| ||
Sbjct 83500 CAAGAGGACATGCCATTCACGTGCGAAGGCATCACGCCAGACATTATAATCAATCCACAC 83441
Query 267093 GCTATTCCTAGTCGTATGACAATTGGTCAATT 267124
|| ||||||||||| ||||| |||||||| ||
Sbjct 83440 GCAATTCCTAGTCGAATGACCATTGGTCATTT 83409
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1515196759249107
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |