Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20nelsoni_20[genbank_20GCA_5F001447455.1_202015-11-24]
2,969 sequences; 47,436,005 total letters
Query= NC_028108.1
Length=171454
Score E
Sequences producing significant alignments: (Bits) Value
seq2810 96.9 4e-15
seq2603 89.7 6e-13
>seq2810
Length=199988
Score = 96.9 bits (106), Expect = 4e-15
Identities = 125/173 (72%), Gaps = 0/173 (0%)
Strand=Plus/Plus
Query 78190 GTTCGCAAATAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCATACTC 78249
|||| |||||||||||| || || || |||||||||||||| ||||| | |||||
Sbjct 182033 GTTCTCAAATAGTACATCCCAGTTTTCAGACCCTTCTTCCAGCCGTAGAAATGCATTGAT 182092
Query 78250 GACAGCTTGGCCAGACTCGGGTTCTCCATGAAGATGTTGAGCGACTGGGACTGGTCGATG 78309
| || || || | |||| | | ||| || || | ||||||||| || || |||
Sbjct 182093 GTCAATTTAGCATAATTCGGCTCGGCTATGTGAATATTCAACGACTGGGATTGATCAATG 182152
Query 78310 TACGCACCGCGGTCGGCCGCCATGTCGATGACCGACTTTTGCGGAATCTCCCA 78362
| || || | ||||| |||||||| ||||| ||||||| | ||| |||||
Sbjct 182153 AATGCTCCCCTTTCGGCGGCCATGTCTATGACGCACTTTTGGGAAATTTCCCA 182205
>seq2603
Length=690759
Score = 89.7 bits (98), Expect = 6e-13
Identities = 196/289 (68%), Gaps = 5/289 (2%)
Strand=Plus/Minus
Query 59827 TCCACTCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGG 59886
|||| ||||| | |||| ||| ||||||| | | || ||||||| ||| |
Sbjct 457297 TCCATTCCGAAATGTACAGCCTCTTGATCGACACCTACATCCGTGATCCGGTGGAGCGTG 457238
Query 59887 CTGGTCTGTTCCGTGCCATAGAGACG-TCCCCCGCAGTTAAACAAAAAGCAGAATGGGCC 59945
| ||||||| || || ||||| | || || || || |||||||||| |||||
Sbjct 457237 ATTTTCTGTTCAACGCGATCGAGACCATTCCGTGC-GTGAAGAAAAAAGCAGACTGGGCT 457179
Query 59946 ATGCAGTGGATGAGT--CCTGGAG-CATCATTTGCACAACGTCTCATAGCTTTTGCATGC 60002
||| ||||| || || || | ||||| ||||| | | || || |||
Sbjct 457178 TTGCGCTGGATCGGTGACCGTCAGTCGCCATTTTGCGAACGTTTGGTCGCGTTCGCAGCT 457119
Query 60003 GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGC 60062
|| ||||| || ||||| || ||| ||| | ||||||||| | |||||||| |||
Sbjct 457118 GTCGAAGGCATTTTCTTTTCCGGCAGCTTCGCGTCAATTTTCTGGTTGAAAAAGCGCGGC 457059
Query 60063 CTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGG 60111
|| ||||| || ||| ||| |||||||||||| || || |||||||
Sbjct 457058 CTGATGCCCGGTTTGACGTTCAGCAACGAGCTGATCTCTCGTGACGAGG 457010
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 548504442873360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |