Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20nelsoni_20[genbank_20GCA_5F001447455.1_202015-11-24] 2,969 sequences; 47,436,005 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq2810 96.9 4e-15 seq2603 89.7 6e-13 >seq2810 Length=199988 Score = 96.9 bits (106), Expect = 4e-15 Identities = 125/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 78190 GTTCGCAAATAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCATACTC 78249 |||| |||||||||||| || || || |||||||||||||| ||||| | ||||| Sbjct 182033 GTTCTCAAATAGTACATCCCAGTTTTCAGACCCTTCTTCCAGCCGTAGAAATGCATTGAT 182092 Query 78250 GACAGCTTGGCCAGACTCGGGTTCTCCATGAAGATGTTGAGCGACTGGGACTGGTCGATG 78309 | || || || | |||| | | ||| || || | ||||||||| || || ||| Sbjct 182093 GTCAATTTAGCATAATTCGGCTCGGCTATGTGAATATTCAACGACTGGGATTGATCAATG 182152 Query 78310 TACGCACCGCGGTCGGCCGCCATGTCGATGACCGACTTTTGCGGAATCTCCCA 78362 | || || | ||||| |||||||| ||||| ||||||| | ||| ||||| Sbjct 182153 AATGCTCCCCTTTCGGCGGCCATGTCTATGACGCACTTTTGGGAAATTTCCCA 182205 >seq2603 Length=690759 Score = 89.7 bits (98), Expect = 6e-13 Identities = 196/289 (68%), Gaps = 5/289 (2%) Strand=Plus/Minus Query 59827 TCCACTCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGG 59886 |||| ||||| | |||| ||| ||||||| | | || ||||||| ||| | Sbjct 457297 TCCATTCCGAAATGTACAGCCTCTTGATCGACACCTACATCCGTGATCCGGTGGAGCGTG 457238 Query 59887 CTGGTCTGTTCCGTGCCATAGAGACG-TCCCCCGCAGTTAAACAAAAAGCAGAATGGGCC 59945 | ||||||| || || ||||| | || || || || |||||||||| ||||| Sbjct 457237 ATTTTCTGTTCAACGCGATCGAGACCATTCCGTGC-GTGAAGAAAAAAGCAGACTGGGCT 457179 Query 59946 ATGCAGTGGATGAGT--CCTGGAG-CATCATTTGCACAACGTCTCATAGCTTTTGCATGC 60002 ||| ||||| || || || | ||||| ||||| | | || || ||| Sbjct 457178 TTGCGCTGGATCGGTGACCGTCAGTCGCCATTTTGCGAACGTTTGGTCGCGTTCGCAGCT 457119 Query 60003 GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGC 60062 || ||||| || ||||| || ||| ||| | ||||||||| | |||||||| ||| Sbjct 457118 GTCGAAGGCATTTTCTTTTCCGGCAGCTTCGCGTCAATTTTCTGGTTGAAAAAGCGCGGC 457059 Query 60063 CTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGG 60111 || ||||| || ||| ||| |||||||||||| || || ||||||| Sbjct 457058 CTGATGCCCGGTTTGACGTTCAGCAACGAGCTGATCTCTCGTGACGAGG 457010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548504442873360