Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20nelsoni_20[genbank_20GCA_5F001447455.1_202015-11-24] 2,969 sequences; 47,436,005 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq2680 205 1e-47 seq1187 123 3e-23 seq827 114 1e-20 seq2603 107 2e-18 seq378 100 3e-16 seq11 95.1 1e-14 seq2465 93.3 5e-14 seq1292 89.7 6e-13 seq2706 82.4 9e-11 >seq2680 Length=639 Score = 205 bits (226), Expect = 1e-47 Identities = 184/229 (80%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||||||||| ||||| || ||||| || || |||||||| ||| || | Sbjct 378 ATGCAGATTTTTGTCAAGACTCTTACAGGGAAGACCATCACCCTTGAGGTGGAG--AGCT 435 Query 27466 --GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACC 27523 || | ||||| ||| ||||||| || ||||| ||||||||||| ||||| ||||||| Sbjct 436 CAGACACCATTGACAATGTGAAGGCCAAGATTCAAGACAAGGAGGGGATTCCACCAGACC 495 Query 27524 AGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATA 27583 ||||| | || || ||||| || ||||| |||||||||| |||||||| |||||||| | Sbjct 496 AGCAGAGGCTTATCTTTGCCGGCAAGCAGCTCGAGGATGGGCGTACCCTGGCAGACTACA 555 Query 27584 ATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || |||| ||||| || || ||||| || ||| | |||||||| ||||| Sbjct 556 ATATCCAGAAGGAGTCTACCCTTCACCTTGTCCTCCGTCTTCGTGGTGG 604 Score = 192 bits (212), Expect = 7e-44 Identities = 181/229 (79%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||||||||| | ||||| ||||| || || | ||||| ||| || | Sbjct 150 ATGCAGATCTTTGTCAAGACCTTGACCGGAAAGACCATCACCTTGGAGGTGGAG--AGCT 207 Query 27466 --GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACC 27523 || | ||| | ||| ||||||||||||| |||||||||||||| || || ||||||| Sbjct 208 CAGACACCATCGATAATGTGAAGGCTAAAATCCAGGACAAGGAGGGTATCCCACCAGACC 267 Query 27524 AGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATA 27583 ||||| | || || ||||| || ||||| || ||||||| |||||||| |||||||| | Sbjct 268 AGCAGAGGCTTATCTTTGCCGGAAAGCAGCTTGAGGATGGCCGTACCCTGGCAGACTACA 327 Query 27584 ATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | |||| ||||||||||| |||||| | || | |||||||| ||||| Sbjct 328 ACATCCAGAAGGAATCCACCCTTCATTTGGTGCTTCGTCTTCGTGGTGG 376 Score = 136 bits (150), Expect = 5e-27 Identities = 119/148 (80%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 27485 AGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTG 27544 |||| || |||||||||||||||||||| || || ||||| |||||||| || ||||| | Sbjct 1 AGGCCAAGATTCAGGACAAGGAGGGAATCCCCCCGGACCAACAGCGTCTGATCTTTGCCG 60 Query 27545 GTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTC 27604 | ||||| || ||||||| || ||||| ||||| || || |||| ||||||||||| | Sbjct 61 GAAAGCAGCTTGAGGATGGCCGCACCCTGGCAGATTACAACATCCAGAAGGAATCCACCC 120 Query 27605 TTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||| | || | ||||| || ||||| Sbjct 121 TTCATTTGGTGCTTCGTCTCCGTGGTGG 148 >seq1187 Length=25466 Score = 123 bits (136), Expect = 3e-23 Identities = 116/148 (78%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || |||||||| || || || || || || ||||| || || || ||| | Sbjct 20236 AATGCAGATATTTGTCAAAACTCTGACTGGGAAAACCATTACACTGGAAGTGGAGCCCTC 20295 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | ||||| |||| |||||| |||||||||||| || ||||||||||| || || || Sbjct 20296 AGACACCATTGAAAATGTGAAGGGTAAAATTCAGGATAAAGAGGGAATTCCACCCGATCA 20355 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAA 27552 || ||||| ||||||||||||||| || Sbjct 20356 ACAACGTCTGATTTTTGCTGGTAAGTAA 20383 Score = 114 bits (126), Expect = 1e-20 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| ||||| ||||| || || ||||| || || || | || || || || Sbjct 20850 AATGCAAATTTTTGTTAAGACCCTCACTGGCAAAACCATCACATTGGAAGTGGAACCATC 20909 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| |||| |||| |||| | ||||| ||||| || || |||||||| ||||| || Sbjct 20910 TGATACAATTGAAAATGTGAAAGGGAAAATACAGGATAAAGAAGGAATTCCACCAGATCA 20969 Query 27525 GCAGCGTCTAATTTTTGCTGGTA 27547 ||| ||||| ||||||||||||| Sbjct 20970 GCAACGTCTGATTTTTGCTGGTA 20992 Score = 114 bits (126), Expect = 1e-20 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| ||||| ||||| || || ||||| || || || | || || || || Sbjct 21133 AATGCAAATTTTTGTTAAGACCCTCACTGGCAAAACCATCACATTGGAAGTGGAACCATC 21192 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| |||| |||| |||| | ||||| ||||| || || |||||||| ||||| || Sbjct 21193 TGATACAATTGAAAATGTGAAAGGGAAAATACAGGATAAAGAAGGAATTCCACCAGATCA 21252 Query 27525 GCAGCGTCTAATTTTTGCTGGTA 27547 ||| ||||| ||||||||||||| Sbjct 21253 GCAACGTCTGATTTTTGCTGGTA 21275 Score = 114 bits (126), Expect = 1e-20 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| ||||| ||||| || || ||||| || || || | || || || || Sbjct 21416 AATGCAAATTTTTGTTAAGACCCTCACTGGCAAAACCATCACATTGGAAGTGGAACCATC 21475 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| |||| |||| |||| | ||||| ||||| || || |||||||| ||||| || Sbjct 21476 TGATACAATTGAAAATGTGAAAGGGAAAATACAGGATAAAGAAGGAATTCCACCAGATCA 21535 Query 27525 GCAGCGTCTAATTTTTGCTGGTA 27547 ||| ||||| ||||||||||||| Sbjct 21536 GCAACGTCTGATTTTTGCTGGTA 21558 Score = 105 bits (116), Expect = 8e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| ||||| ||||| || || ||||| || || || | || || || || Sbjct 21699 AATGCAAATTTTTGTTAAGACCCTCACTGGCAAAACCATCACATTGGAAGTGGAACCATC 21758 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| |||| |||| |||| | ||||| ||||| ||||| |||||||| || || || Sbjct 21759 TGATACAATTGAAAATGTGAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCA 21818 Query 27525 GCAGCGTCTAATTTTTGCTGGTA 27547 || ||| | ||||||||||||| Sbjct 21819 ACAACGTTTGATTTTTGCTGGTA 21841 Score = 100 bits (110), Expect = 3e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| || || ||||| ||||| || || || || || | || || || || Sbjct 21984 AATGCAAATTTTCGTTAAGACTCTTACTGGAAAAACAATAACATTGGAAGTAGAACCATC 22043 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| || | ||| | || | ||||| ||||| ||||| |||||||| ||||| || Sbjct 22044 TGATACAATAGAGAATGTAAAAGGCAAAATACAGGATAAGGAAGGAATTCCACCAGATCA 22103 Query 27525 GCAGCGTCTAATTTTTGCTGGTA 27547 ||| ||||| ||||||||||||| Sbjct 22104 GCAACGTCTGATTTTTGCTGGTA 22126 Score = 86.0 bits (94), Expect = 7e-12 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||| || ||| | || || || || ||||| ||||| |||||| | Sbjct 20569 ATGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCA 20628 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| |||| | || || ||||| ||||| || || || || || || || Sbjct 20629 GATACAATTGAAAATGTAAAAAGCAAGATTCAAGACAAAGAAGGCATCCCACCGGATCAA 20688 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGC 27550 ||||| || ||||||||||||| || Sbjct 20689 CAGCGGCTTATTTTTGCTGGTATGC 20713 >seq827 Length=57960 Score = 114 bits (126), Expect = 1e-20 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| ||||| ||||| || || || ||||| || || | || || || || Sbjct 29769 AATGCAAATTTTTGTTAAGACCCTAACTGGGAAGACCATCACGTTGGAAGTGGAACCATC 29710 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| ||| ||| |||| | || ||||| || |||||||||||||||||||| || Sbjct 29709 TGATACTGTTGAGAATGTGAAAGGGAAGATTCAAGATAAGGAGGGAATTCCTCCAGATCA 29650 Query 27525 GCAGCGTCTAATTTTTGCTGGTA 27547 |||||||| ||||||||||||| Sbjct 29649 ACAGCGTCTGATTTTTGCTGGTA 29627 Score = 109 bits (120), Expect = 6e-19 Identities = 113/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || ||||| || || || || || || || |||||||| || || || | Sbjct 31888 AATGCAGATATTTGTGAAAACTCTGACTGGGAAAACCATTACTCTGGAAGTGGAACCCTT 31829 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || |||| |||| |||| | |||||||||||| || ||||||||||| || || || Sbjct 31828 AGACTCAATTGAAAATGTGAAAGGTAAAATTCAGGATAAAGAGGGAATTCCACCCGATCA 31769 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAA 27552 |||||||| ||||||||||||||| || Sbjct 31768 ACAGCGTCTGATTTTTGCTGGTAAGTAA 31741 Score = 107 bits (118), Expect = 2e-18 Identities = 112/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| || || ||||| ||||| || || || || ||| | || || || || Sbjct 30920 AATGCAAATTTTCGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATC 30861 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| || | |||| |||| | |||||||| || || ||||||||||| || || || Sbjct 30860 TGATACAATAGAAAATGTGAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCGGATCA 30801 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCA 27551 || ||| | ||||||||||||||||| Sbjct 30800 ACAACGTTTGATTTTTGCTGGTAAGCA 30774 Score = 104 bits (114), Expect = 3e-17 Identities = 111/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| || || ||||| ||||| || || || || ||| | || || || | Sbjct 30638 AATGCAAATTTTCGTTAAGACTCTTACTGGAAAAACAATAACTTTGGAAGTAGAACTATC 30579 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| || | |||| |||| | |||||||| || || ||||||||||| || || || Sbjct 30578 TGATACAATAGAAAATGTGAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCGGATCA 30519 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCA 27551 || ||| | ||||||||||||||||| Sbjct 30518 ACAACGTTTGATTTTTGCTGGTAAGCA 30492 Score = 100 bits (110), Expect = 3e-16 Identities = 109/145 (75%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| || || ||||| ||||| || || || || ||| | || || || | Sbjct 30356 AATGCAAATTTTCGTTAAGACTCTTACTGGAAAAACAATAACTTTGGAAGTAGAACTATC 30297 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| || | |||| |||| | |||||||| || || ||||||||||| || || || Sbjct 30296 TGATACAATAGAAAATGTGAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCGGATCA 30237 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAG 27549 || ||| | ||||||||||||||| Sbjct 30236 ACAACGTTTGATTTTTGCTGGTAAG 30212 Score = 91.5 bits (100), Expect = 2e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||| || ||| | || || || || ||||| ||||| |||||| || Sbjct 31555 ATGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCATCA 31496 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| |||| | || || ||||| ||||| || || || || || || || Sbjct 31495 GATACAATTGAAAATGTAAAAAGCAAGATTCAAGACAAAGAAGGCATCCCACCGGATCAA 31436 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGC 27550 ||||| || ||||||||||||| || Sbjct 31435 CAGCGGCTTATTTTTGCTGGTATGC 31411 >seq2603 Length=690759 Score = 107 bits (118), Expect = 2e-18 Identities = 185/268 (69%), Gaps = 3/268 (1%) Strand=Plus/Minus Query 64582 CTCATGATTGACAAGTTTGTTCGGGATCCTGTCGAGAAGGATGGACTGTTCAGGGCTATA 64641 ||| |||| |||| | | || ||||| || ||| ||| ||||||| || || Sbjct 457277 CTCTTGATCGACACCTACATCCGTGATCCGGTGGAGCGTGATTTTCTGTTCAACGCGATC 457218 Query 64642 GAGACTGTACCCGCTGTTACTAAAAAGGCTGAATGGGCCATCCGGTGGATGAAT---CGT 64698 ||||| | || || | ||||| || || ||||| | || ||||| | ||| Sbjct 457217 GAGACCATTCCGTGCGTGAAGAAAAAAGCAGACTGGGCTTTGCGCTGGATCGGTGACCGT 457158 Query 64699 GGGTCGTCGTTTGGTCAGCGTCTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCT 64758 |||| | ||| | | ||| | | || || || ||| ||||| ||||||||||| Sbjct 457157 CAGTCGCCATTTTGCGAACGTTTGGTCGCGTTCGCAGCTGTCGAAGGCATTTTCTTTTCC 457098 Query 64759 GGGTCATTCTGTTCTATTTTCTGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTT 64818 || ||| || ||||||||| | |||||||| ||||||||||| ||| || |||| Sbjct 457097 GGCAGCTTCGCGTCAATTTTCTGGTTGAAAAAGCGCGGCCTGATGCCCGGTTTGACGTTC 457038 Query 64819 TCGAACGAGCTGATCTCTCGGGACGAGG 64846 ||||||||||||||||| ||||||| Sbjct 457037 AGCAACGAGCTGATCTCTCGTGACGAGG 457010 >seq378 Length=398 Score = 100 bits (110), Expect = 3e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| || || ||||| ||||||||||| || || || | || || || || Sbjct 114 AATGCAAATTTTCGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATC 173 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| || | ||| | || | ||||| ||||| ||||| |||||||| ||||| || Sbjct 174 TGATACAATAGAGAATGTAAAAGGCAAAATACAGGATAAGGAAGGAATTCCACCAGATCA 233 Query 27525 GCAGCGTCTAATTTTTGCTGGTA 27547 ||| ||| | || |||||||||| Sbjct 234 GCAACGTTTGATATTTGCTGGTA 256 >seq11 Length=460 Score = 95.1 bits (104), Expect = 1e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| || || ||||| ||||||||||| || || || | || || || || Sbjct 59 AATGCAAATTTTCGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATC 118 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| || | ||| | || | ||||| ||||| ||||| |||||||| || || || Sbjct 119 TGATACAATAGAGAATGTAAAAGGCAAAATACAGGATAAGGAAGGAATTCCACCGGATCA 178 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAG 27549 || ||| | || |||||||||||| Sbjct 179 ACAACGTTTGATATTTGCTGGTAAG 203 >seq2465 Length=325902 Score = 93.3 bits (102), Expect = 5e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || ||||| || || || ||||| ||||| || || ||||| || || || ||||| || Sbjct 18023 ATTATGCAGATATTCGTGAAGACACTTACTGGAAAAACTATAACACTAGAAGTTGAACCA 17964 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 || | ||| | |||| | || |||||||||||| ||||| || |||||||| || Sbjct 17963 TCAGACACCATCGAAAATGTTAAAAGTAAAATTCAGGATAAGGAAGGCATTCCTCCTGAT 17904 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAA 27548 ||||| | |||| ||||| ||||| Sbjct 17903 CAGCAAAGATTAATCTTTGCAGGTAA 17878 >seq1292 Length=279 Score = 89.7 bits (98), Expect = 6e-13 Identities = 133/187 (71%), Gaps = 4/187 (2%) Strand=Plus/Minus Query 27448 CTTGAGGTTGAGTCAGGT--GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGG 27505 || ||||||||| || | |||| |||| || | ||||| || || ||||| |||| Sbjct 279 CTGGAGGTTGAG--AGCTCCGATACAATTGATAACGTCAAGGCCAAGATCCAGGATAAGG 222 Query 27506 AGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATC 27565 | || || || || || |||||| | | || || || || ||||| |||||||| | | Sbjct 221 AAGGGATCCCACCGGATCAGCAGAGGTTGATCTTCGCCGGAAAGCAGCTCGAGGACGGTA 162 Query 27566 GTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTC 27625 | ||| | || || || || | || ||||| || || || ||| | || | ||||||| Sbjct 161 GGACCTTGGCTGATTACAACATTCAGAAGGAGTCAACCCTCCATTTGGTGCTCCGTCTTC 102 Query 27626 GCGGTGG 27632 ||||||| Sbjct 101 GCGGTGG 95 >seq2706 Length=224770 Score = 82.4 bits (90), Expect = 9e-11 Identities = 89/117 (76%), Gaps = 1/117 (1%) Strand=Plus/Plus Query 27394 AATATT-ACTATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGA 27452 |||||| ||| |||||||| ||||| || || || || || ||||| || ||| | || Sbjct 73135 AATATTTACTTAGATGCAAATATTTGTGAAAACTCTAACAGGAAAGACCATCACTTTGGA 73194 Query 27453 GGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509 || ||| | ||||| ||| ||| ||||||||||||||||||||||||| || Sbjct 73195 AGTAGAGCCTTCTGATACAATTCAGAATGTGAAGGCTAAAATTCAGGACAAGGAAGG 73251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570289234355280