Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20nelsoni_20[genbank_20GCA_5F001447455.1_202015-11-24]
2,969 sequences; 47,436,005 total letters
Query= NC_028636.1
Length=135952
Score E
Sequences producing significant alignments: (Bits) Value
seq827 123 2e-23
seq1187 113 4e-20
seq2465 96.9 3e-15
seq1292 96.9 3e-15
seq2680 86.0 5e-12
>seq827
Length=57960
Score = 123 bits (136), Expect = 2e-23
Identities = 103/126 (82%), Gaps = 0/126 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||||||||| ||||||||||| || || | |||||||| ||||||||||| |
Sbjct 31887 ATGCAGATATTTGTGAAAACTCTGACTGGGAAAACCATTACTCTGGAAGTGGAACCCTTA 31828
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||||| ||||| | || ||| |||||||| || ||||| || || ||||||||||||
Sbjct 31827 GACTCAATTGAAAATGTGAAAGGTAAAATTCAGGATAAAGAGGGAATTCCACCCGATCAA 31768
Query 27108 CAGCGT 27113
||||||
Sbjct 31767 CAGCGT 31762
Score = 109 bits (120), Expect = 5e-19
Identities = 99/125 (79%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||||||||| ||||| |||| || || | ||||| |||||||| || || ||
Sbjct 31555 ATGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCATCA 31496
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
|| | ||||| | || ||| || |||||||||||||||||||| ||||| ||||||
Sbjct 31495 GATACAATTGAAAATGTAAAAAGCAAGATTCAAGACAAAGAAGGCATCCCACCGGATCAA 31436
Query 27108 CAGCG 27112
|||||
Sbjct 31435 CAGCG 31431
Score = 82.4 bits (90), Expect = 7e-11
Identities = 98/133 (74%), Gaps = 0/133 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
||||| || ||||| || || || || ||||| | || || | ||||||||||| ||
Sbjct 55631 ATGCAAATTTTTGTTAAGACCCTCACTGGCAAAACCATCACATTGGAAGTGGAACCATCT 55572
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
|| | ||||| | || ||| ||||| || || |||||||| || ||||| |||||
Sbjct 55571 GATACAATTGAAAATGTGAAAGGGAAAATACAGGATAAAGAAGGAATTCCACCAGATCAG 55512
Query 27108 CAGCGTTTAATAT 27120
|| ||||| ||||
Sbjct 55511 CAACGTTTGATAT 55499
>seq1187
Length=25466
Score = 113 bits (124), Expect = 4e-20
Identities = 100/125 (80%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||||||||| ||||| |||| || || | ||||| |||||||| || |||||
Sbjct 20569 ATGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCA 20628
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
|| | ||||| | || ||| || |||||||||||||||||||| ||||| ||||||
Sbjct 20629 GATACAATTGAAAATGTAAAAAGCAAGATTCAAGACAAAGAAGGCATCCCACCGGATCAA 20688
Query 27108 CAGCG 27112
|||||
Sbjct 20689 CAGCG 20693
Score = 105 bits (116), Expect = 6e-18
Identities = 99/126 (79%), Gaps = 0/126 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||||||||| ||||||||||| || || | ||||| || |||||||| || ||
Sbjct 20237 ATGCAGATATTTGTCAAAACTCTGACTGGGAAAACCATTACACTGGAAGTGGAGCCCTCA 20296
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | ||||| | || || |||||||| || ||||| || || ||||||||||||
Sbjct 20297 GACACCATTGAAAATGTGAAGGGTAAAATTCAGGATAAAGAGGGAATTCCACCCGATCAA 20356
Query 27108 CAGCGT 27113
|| |||
Sbjct 20357 CAACGT 20362
Score = 82.4 bits (90), Expect = 7e-11
Identities = 98/133 (74%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
||||| || ||||| || || || || ||||| | || || | ||||||||||| ||
Sbjct 22268 ATGCAAATTTTTGTTAAGACCCTCACTGGCAAAACCATCACATTGGAAGTGGAACCATCT 22327
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
|| | ||||| | || ||| ||||| || || |||||||| || ||||| |||||
Sbjct 22328 GATACAATTGAAAATGTGAAAGGGAAAATACAGGATAAAGAAGGAATTCCACCAGATCAG 22387
Query 27108 CAGCGTTTAATAT 27120
|| ||||| ||||
Sbjct 22388 CAACGTTTGATAT 22400
>seq2465
Length=325902
Score = 96.9 bits (106), Expect = 3e-15
Identities = 101/133 (76%), Gaps = 0/133 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| ||||| ||||| | || || || | || || | || || || || ||
Sbjct 17056 ATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAGGTAGAGCCTTCG 16997
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| ||||||| | || ||| ||||||||||||||||||||||| ||||| |||||
Sbjct 16996 GACACGATTGAAAATGTGAAAAGCAAAATTCAAGACAAAGAAGGCATTCCACCTGATCAG 16937
Query 27108 CAGCGTTTAATAT 27120
||||| || ||||
Sbjct 16936 CAGCGATTGATAT 16924
>seq1292
Length=279
Score = 96.9 bits (106), Expect = 3e-15
Identities = 125/173 (72%), Gaps = 0/173 (0%)
Strand=Plus/Minus
Query 27045 TCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGAT 27104
||||| | ||||| | ||||| || || || || || ||||| || ||||| |||
Sbjct 264 TCCGATACAATTGATAACGTCAAGGCCAAGATCCAGGATAAGGAAGGGATCCCACCGGAT 205
Query 27105 CAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTAC 27164
|| ||| | || || | |||||| || || | || ||| || |||| | | ||||||
Sbjct 204 CAGCAGAGGTTGATCTTCGCCGGAAAGCAGCTCGAGGACGGTAGGACCTTGGCTGATTAC 145
Query 27165 AACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
|||||||| |||||||| ||| | |||||||| | ||| | || ||||| ||
Sbjct 144 AACATTCAGAAGGAGTCAACCCTCCATTTGGTGCTCCGTCTTCGCGGTGGTAT 92
>seq2680
Length=639
Score = 86.0 bits (94), Expect = 5e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| ||||| || ||||| || || ||| | || || ||||| ||||| ||
Sbjct 378 ATGCAGATTTTTGTCAAGACTCTTACAGGGAAGACCATCACCCTTGAGGTGGAGAGCTCA 437
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | ||||| | || || || ||||||||||| || || || ||||| || ||
Sbjct 438 GACACCATTGACAATGTGAAGGCCAAGATTCAAGACAAGGAGGGGATTCCACCAGACCAG 497
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
||| | | || | |||||||| || | || || | ||| | | || |||||
Sbjct 498 CAGAGGCTTATCTTTGCCGGCAAGCAGCTCGAGGATGGGCGTACCCTGGCAGACTACAAT 557
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214
|| || |||||||| ||| | || | || | ||| | || |||||
Sbjct 558 ATCCAGAAGGAGTCTACCCTTCACCTTGTCCTCCGTCTTCGTGGTGG 604
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 434902259090880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |