Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20nelsoni_20[genbank_20GCA_5F001447455.1_202015-11-24] 2,969 sequences; 47,436,005 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq1187 86.0 4e-12 seq827 86.0 4e-12 >seq1187 Length=25466 Score = 86.0 bits (94), Expect = 4e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 27922 TTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAG 27981 ||| | || ||||| ||||| |||| ||| | ||||||||||| ||||| || ||||| Sbjct 20473 TTTTCAGGCAAACAGTTGGAAGACGGACGTACTTTGTCCGATTATAACATTCAGAAAGAA 20532 Query 27982 AGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||| | || ||||||||||||||||| || || Sbjct 20533 AGCACGCTTCACTTGGTTTTGCGTTTGCGCGGTGG 20567 >seq827 Length=57960 Score = 86.0 bits (94), Expect = 4e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 27922 TTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAG 27981 ||| | || ||||| ||||| |||| ||| | ||||||||||| ||||| || || ||| Sbjct 31651 TTTTCAGGCAAACAGTTGGAAGACGGACGTACTTTGTCCGATTATAACATTCAGAAGGAG 31592 Query 27982 AGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||| | || ||||||||||||||||| || || Sbjct 31591 AGCACGCTTCACTTGGTTTTGCGTTTGCGCGGTGG 31557 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355849523230263