Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20nelsoni_20[genbank_20GCA_5F001447455.1_202015-11-24] 2,969 sequences; 47,436,005 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq2680 179 9e-40 seq1292 107 4e-18 seq2465 100 7e-16 >seq2680 Length=639 Score = 179 bits (198), Expect = 9e-40 Identities = 173/222 (78%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | |||||||||||||| || ||||| || ||||| || || || || ||||| Sbjct 599 ACGAAGACGGAGGACAAGGTGAAGGGTAGACTCCTTCTGGATATTGTAGTCTGCCAGGGT 540 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||| || ||||||||||| || |||||||| | || ||||| || |||| || Sbjct 539 ACGCCCATCCTCGAGCTGCTTGCCGGCAAAGATAAGCCTCTGCTGGTCTGGTGGAATCCC 480 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 |||||||| || ||||| ||||| || || |||||||| ||||| || ||||| || Sbjct 479 CTCCTTGTCTTGAATCTTGGCCTTCACATTGTCAATGGTGTCTGAGCTCTCCACCTCAAG 420 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| ||||| || || |||||||| ||||| | |||||| Sbjct 419 GGTGATGGTCTTCCCTGTAAGAGTCTTGACAAAAATCTGCAT 378 Score = 158 bits (174), Expect = 3e-33 Identities = 168/222 (76%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || | ||||| ||||| || || |||||||| || || || ||||| Sbjct 371 ACGAAGACGAAGCACCAAATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCTGCCAGGGT 312 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||| || |||||||| || || |||||||| | || ||||| || || | || Sbjct 311 ACGGCCATCCTCAAGCTGCTTTCCGGCAAAGATAAGCCTCTGCTGGTCTGGTGGGATACC 252 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 |||||||||||||| || ||||| || ||||||||||| ||||| || ||||| | Sbjct 251 CTCCTTGTCCTGGATTTTAGCCTTCACATTATCGATGGTGTCTGAGCTCTCCACCTCCAA 192 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| |||||||| || | ||||| ||||| | |||||| Sbjct 191 GGTGATGGTCTTTCCGGTCAAGGTCTTGACAAAGATCTGCAT 150 Score = 107 bits (118), Expect = 4e-18 Identities = 95/119 (80%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 ||||| ||||| || || |||||||| ||||| || ||||| | ||||| || |||||| Sbjct 124 TGAAGGGTGGATTCCTTCTGGATGTTGTAATCTGCCAGGGTGCGGCCATCCTCAAGCTGC 65 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 || || || ||||| || || |||||||| || || | ||| ||||||||||| ||||| Sbjct 64 TTTCCGGCAAAGATCAGACGCTGTTGGTCCGGGGGGATTCCCTCCTTGTCCTGAATCTT 6 >seq1292 Length=279 Score = 107 bits (118), Expect = 4e-18 Identities = 131/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||| | || || | || || || ||||| || || ||||| ||||| || | |||| Sbjct 101 CGAAGACGGAGCACCAAATGGAGGGTTGACTCCTTCTGAATGTTGTAATCAGCCAAGGTC 160 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 || || || || |||||||| || |||||||| | | || || || || || | ||| Sbjct 161 CTACCGTCCTCGAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGATCCGGTGGGATCCCT 220 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||| ||||||||||| || ||||| || || || || ||||| |||||||| || Sbjct 221 TCCTTATCCTGGATCTTGGCCTTGACGTTATCAATTGTATCGGAGCTCTCAACCTCCAG 279 >seq2465 Length=325902 Score = 100 bits (110), Expect = 7e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 || ||||| ||||| | | ||| || |||||||||| |||||||| ||||| || || Sbjct 17878 TTACCTGCAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAATTTTA 17937 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 ||| || |||||||||||||| || |||||| || || || || || ||||| || Sbjct 17938 CTTTTAACATTTTCGATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAGTA 17997 Query 211092 AGAGTCTTTACAAACACCTGCAT 211114 || ||||| || || | |||||| Sbjct 17998 AGTGTCTTCACGAATATCTGCAT 18020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159107905495685