Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20nelsoni_20[genbank_20GCA_5F001447455.1_202015-11-24]
2,969 sequences; 47,436,005 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq2680 179 9e-40
seq1292 107 4e-18
seq2465 100 7e-16
>seq2680
Length=639
Score = 179 bits (198), Expect = 9e-40
Identities = 173/222 (78%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952
|||||| | |||||||||||||| || ||||| || ||||| || || || || |||||
Sbjct 599 ACGAAGACGGAGGACAAGGTGAAGGGTAGACTCCTTCTGGATATTGTAGTCTGCCAGGGT 540
Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012
| ||||| || ||||||||||| || |||||||| | || ||||| || |||| ||
Sbjct 539 ACGCCCATCCTCGAGCTGCTTGCCGGCAAAGATAAGCCTCTGCTGGTCTGGTGGAATCCC 480
Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072
|||||||| || ||||| ||||| || || |||||||| ||||| || ||||| ||
Sbjct 479 CTCCTTGTCTTGAATCTTGGCCTTCACATTGTCAATGGTGTCTGAGCTCTCCACCTCAAG 420
Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
||||| ||||| || || |||||||| ||||| | ||||||
Sbjct 419 GGTGATGGTCTTCCCTGTAAGAGTCTTGACAAAAATCTGCAT 378
Score = 158 bits (174), Expect = 3e-33
Identities = 168/222 (76%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952
|||||| | || || | ||||| ||||| || || |||||||| || || || |||||
Sbjct 371 ACGAAGACGAAGCACCAAATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCTGCCAGGGT 312
Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012
| ||||| || |||||||| || || |||||||| | || ||||| || || | ||
Sbjct 311 ACGGCCATCCTCAAGCTGCTTTCCGGCAAAGATAAGCCTCTGCTGGTCTGGTGGGATACC 252
Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072
|||||||||||||| || ||||| || ||||||||||| ||||| || ||||| |
Sbjct 251 CTCCTTGTCCTGGATTTTAGCCTTCACATTATCGATGGTGTCTGAGCTCTCCACCTCCAA 192
Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
||||| |||||||| || | ||||| ||||| | ||||||
Sbjct 191 GGTGATGGTCTTTCCGGTCAAGGTCTTGACAAAGATCTGCAT 150
Score = 107 bits (118), Expect = 4e-18
Identities = 95/119 (80%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971
||||| ||||| || || |||||||| ||||| || ||||| | ||||| || ||||||
Sbjct 124 TGAAGGGTGGATTCCTTCTGGATGTTGTAATCTGCCAGGGTGCGGCCATCCTCAAGCTGC 65
Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030
|| || || ||||| || || |||||||| || || | ||| ||||||||||| |||||
Sbjct 64 TTTCCGGCAAAGATCAGACGCTGTTGGTCCGGGGGGATTCCCTCCTTGTCCTGAATCTT 6
>seq1292
Length=279
Score = 107 bits (118), Expect = 4e-18
Identities = 131/179 (73%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953
||||| | || || | || || || ||||| || || ||||| ||||| || | ||||
Sbjct 101 CGAAGACGGAGCACCAAATGGAGGGTTGACTCCTTCTGAATGTTGTAATCAGCCAAGGTC 160
Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013
|| || || || |||||||| || |||||||| | | || || || || || | |||
Sbjct 161 CTACCGTCCTCGAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGATCCGGTGGGATCCCT 220
Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072
||||| ||||||||||| || ||||| || || || || ||||| |||||||| ||
Sbjct 221 TCCTTATCCTGGATCTTGGCCTTGACGTTATCAATTGTATCGGAGCTCTCAACCTCCAG 279
>seq2465
Length=325902
Score = 100 bits (110), Expect = 7e-16
Identities = 108/143 (76%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031
|| ||||| ||||| | | ||| || |||||||||| |||||||| ||||| || ||
Sbjct 17878 TTACCTGCAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAATTTTA 17937
Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091
||| || |||||||||||||| || |||||| || || || || || ||||| ||
Sbjct 17938 CTTTTAACATTTTCGATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAGTA 17997
Query 211092 AGAGTCTTTACAAACACCTGCAT 211114
|| ||||| || || | ||||||
Sbjct 17998 AGTGTCTTCACGAATATCTGCAT 18020
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1159107905495685
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |