Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20nelsoni_20[genbank_20GCA_5F001447455.1_202015-11-24] 2,969 sequences; 47,436,005 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq2465 89.7 3e-13 seq1187 82.4 5e-11 seq827 82.4 5e-11 >seq2465 Length=325902 Score = 89.7 bits (98), Expect = 3e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||||||||| || ||||| | || |||||||| ||||| | || || || | | Sbjct 17057 AATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAGGTAGAGCCTTC 16998 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| |||||| | ||| |||||| ||||||||||| | || || ||||| Sbjct 16997 GGACACGATTGAAAATGTGAAAAGCAAAATTCAAGACAAAGAAGGCATTCCACCTGATCA 16938 Query 23730 ACAGCGTTTAATATTTGCCGGCAA 23753 ||||| || |||||||| || || Sbjct 16937 GCAGCGATTGATATTTGCTGGTAA 16914 >seq1187 Length=25466 Score = 82.4 bits (90), Expect = 5e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || ||||| | || ||||||||||| || || |||||||| | | Sbjct 20569 ATGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCA 20628 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||||| ||||| || ||| ||||||||||| | || || |||||| Sbjct 20629 GATACAATTGAAAATGTAAAAAGCAAGATTCAAGACAAAGAAGGCATCCCACCGGATCAA 20688 Query 23731 CAGCGTTTAATATTTGCCGG 23750 ||||| | || ||||| || Sbjct 20689 CAGCGGCTTATTTTTGCTGG 20708 >seq827 Length=57960 Score = 82.4 bits (90), Expect = 5e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || ||||| | || ||||||||||| || || |||||||| | | Sbjct 31555 ATGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCATCA 31496 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||||| ||||| || ||| ||||||||||| | || || |||||| Sbjct 31495 GATACAATTGAAAATGTAAAAAGCAAGATTCAAGACAAAGAAGGCATCCCACCGGATCAA 31436 Query 23731 CAGCGTTTAATATTTGCCGG 23750 ||||| | || ||||| || Sbjct 31435 CAGCGGCTTATTTTTGCTGG 31416 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337997369228252