Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20nelsoni_20[genbank_20GCA_5F001447455.1_202015-11-24] 2,969 sequences; 47,436,005 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq2680 152 1e-31 seq1187 95.1 3e-14 >seq2680 Length=639 Score = 152 bits (168), Expect = 1e-31 Identities = 158/207 (76%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | ||||||||||| || || || || || |||| |||||| || |||| || Sbjct 599 ACGAAGACGGAGGACAAGGTGAAGGGTAGACTCCTTCTGGATATTGTAGTCTGCCAGGGT 540 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||| || |||||||| || || |||||||| | || ||||| || ||||| || Sbjct 539 ACGCCCATCCTCGAGCTGCTTGCCGGCAAAGATAAGCCTCTGCTGGTCTGGTGGAATCCC 480 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||||||||| ||||| ||||||| || |||||||||||| | ||||| || | Sbjct 479 CTCCTTGTCTTGAATCTTGGCCTTCACATTGTCAATGGTGTCTGAGCTCTCCACCTCAAG 420 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTT 225698 ||||| ||||| || || | ||| || Sbjct 419 GGTGATGGTCTTCCCTGTAAGAGTCTT 393 Score = 143 bits (158), Expect = 6e-29 Identities = 156/207 (75%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || | || || |||||||| || |||| ||||| || |||| || Sbjct 371 ACGAAGACGAAGCACCAAATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCTGCCAGGGT 312 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||| || |||||||| || || |||||||| | || ||||| || || ||||| Sbjct 311 ACGGCCATCCTCAAGCTGCTTTCCGGCAAAGATAAGCCTCTGCTGGTCTGGTGGGATACC 252 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| ||||| || ||||||| ||||||||||||||| | ||||| || || Sbjct 251 CTCCTTGTCCTGGATTTTAGCCTTCACATTATCGATGGTGTCTGAGCTCTCCACCTCCAA 192 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTT 225698 ||||| ||||| || ||||| || || Sbjct 191 GGTGATGGTCTTTCCGGTCAAGGTCTT 165 >seq1187 Length=25466 Score = 95.1 bits (104), Expect = 3e-14 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629 ||| ||||| || || || |||||||| ||||| ||||| || || || || || || || Sbjct 20380 CTTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTT 20321 Query 225630 TTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 ||||||| ||| ||||||||||||| ||||| || | || || || || || || Sbjct 20320 ACCCTTCACATTTTCAATGGTGTCTGAGGGCTCCACTTCCAGTGTAATGGTTTTCCCAGT 20261 Query 225690 CAAAGTTTTTATGAACACTTGCATTTT 225716 || |||||| | || | |||||||| Sbjct 20260 CAGAGTTTTGACAAATATCTGCATTTT 20234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192485835740486