Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20nelsoni_20[genbank_20GCA_5F001447455.1_202015-11-24] 2,969 sequences; 47,436,005 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq2810 149 9e-31 >seq2810 Length=199988 Score = 149 bits (164), Expect = 9e-31 Identities = 166/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 76773 TTATCCAATGTAAACTGAATTGGAGAAGATGCGGGTTTTGTACGTAGATAGTACATACCA 76832 ||||||| || || ||||| | | ||| || || || | | ||||||||| ||| Sbjct 181994 TTATCCACGGTGAATTGAATAGCCGTCACTGCCGGCTTGGTTCTCAAATAGTACATCCCA 182053 Query 76833 GTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGA 76892 ||||| |||||| |||| |||||||||||||| ||||| ||| | |||| | || Sbjct 182054 GTTTTCAGACCCTTCTTCCAGCCGTAGAAATGCATTGATGTCAATTTAGCATAATTCGGC 182113 Query 76893 TCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCC 76952 |||||||| |||||||||| |||||| |||||| ||||| ||||| || || || ||| Sbjct 182114 TCGGCTATGTGAATATTCAACGACTGGGATTGATCAATGAATGCTCCCCTTTCGGCGGCC 182173 Query 76953 ATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTG 76994 || | ||| | | |||||| | ||||||||||| || ||| Sbjct 182174 ATGTCTATGACGCACTTTTGGGAAATTTCCCAAACCGTCTTG 182215 Score = 131 bits (144), Expect = 2e-25 Identities = 153/207 (74%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 77924 TTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGA 77983 |||||| ||||| ||||| | ||| |||||||||| ||||||| |||||||||| ||| Sbjct 183487 TTCAAACTCATCGCCCCACAAATCCGCCAATCCAGGACATTCATGAGGGCACATCAGTGA 183546 Query 77984 CCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAA 78043 ||| || || || | | || || ||||| || |||||||||||||| || || ||| Sbjct 183547 CCAATCTCCGTCGGCTTCAATGCGCTTCATGAATAGATCAGGTATCCAGAGGGCGTAAAA 183606 Query 78044 TAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCAT 78103 | |||||||| || | |||||| ||||| |||||||| || ||||| || | Sbjct 183607 CAAATCTCGGGCTCGGTTTTCTTCGACGCCTGTGTTCTTTTTCGCGTCAAGAAAATCAAA 183666 Query 78104 AATATCAGAATGCCATGGTTCTAGATA 78130 || || | ||||| ||||| | ||| Sbjct 183667 TATGTCTGCGTGCCAAGGTTCCAAATA 183693 Score = 114 bits (126), Expect = 2e-20 Identities = 186/261 (71%), Gaps = 10/261 (4%) Strand=Plus/Plus Query 77284 ATTTCCAATCCCAAAGATCTGAAGGTACAACATCCCAAAGATCGTATTGTAGAATTCCGT 77343 ||| ||||||||| | ||| | ||| ||||| ||| | || ||||| ||||| || | Sbjct 182652 ATTCCCAATCCCACAAATCCGTAGGCTGAACATTCCACATGTCATATTGAAGAATACCCT 182711 Query 77344 TACTAGCATATGATCCATTATATGTTTCATAAGGTCCTT-CTGTTTCAGCTAGTTCACAA 77402 ||||||| ||| || | ||| || || || || || |||||| || | || ||| Sbjct 182712 TACTAGCTGGTGAGCCTTGATAAGTCTCGTATGGGCCAAACTGTTTT-GCCAAATCGCAA 182770 Query 77403 CTCGCTTCCAATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAG--ATCTTG-T 77459 || ||| || || | ||||| || ||||| ||||| |||||||| | |||| | | Sbjct 182771 CTGCTTTCTAACGCAGCATAATAGATGGTTTCAAAAATTTTCTTATTCAACAATCTAGCT 182830 Query 77460 GCTTCA-ATACTATCAAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAAC 77518 |||| || ||||||||||| | | | |||||| ||||| || ||||| || || Sbjct 182831 TCTTCGGAT----TCAAACGGATATCGCATCAAAATAAAAGCATCCGCCAATCCTTGCAC 182886 Query 77519 TCCAATACCAATAGGTCTATG 77539 ||||||||||| |||| ||| Sbjct 182887 ACCAATACCAATTGGTCGATG 182907 Score = 98.7 bits (108), Expect = 1e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 77123 TATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCAC 77182 || |||||||||||| || | || | |||||| || | ||| || || | ||| || Sbjct 182420 TACTTGAAATTCTCCCGATAGCACACGACGAGTATAGACATTCGACGTGTACGCTTCTAC 182479 Query 77183 AGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAA 77242 ||||||||||| ||||||||||| || || || ||||| ||||| || |||| ||| || Sbjct 182480 TGATTCATTGTTGCCCAAAATTTGCGCTGTCGATGCAGTCGGCATTGGAGCCAACAACAA 182539 Query 77243 ACTATTTCTGAGACCAT 77259 |||||| ||||||| Sbjct 182540 CGAATTTCTCAGACCAT 182556 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694643019104160