Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20nelsoni_20[genbank_20GCA_5F001447455.1_202015-11-24]
2,969 sequences; 47,436,005 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq2810 149 9e-31
>seq2810
Length=199988
Score = 149 bits (164), Expect = 9e-31
Identities = 166/222 (75%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 76773 TTATCCAATGTAAACTGAATTGGAGAAGATGCGGGTTTTGTACGTAGATAGTACATACCA 76832
||||||| || || ||||| | | ||| || || || | | ||||||||| |||
Sbjct 181994 TTATCCACGGTGAATTGAATAGCCGTCACTGCCGGCTTGGTTCTCAAATAGTACATCCCA 182053
Query 76833 GTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGA 76892
||||| |||||| |||| |||||||||||||| ||||| ||| | |||| | ||
Sbjct 182054 GTTTTCAGACCCTTCTTCCAGCCGTAGAAATGCATTGATGTCAATTTAGCATAATTCGGC 182113
Query 76893 TCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCC 76952
|||||||| |||||||||| |||||| |||||| ||||| ||||| || || || |||
Sbjct 182114 TCGGCTATGTGAATATTCAACGACTGGGATTGATCAATGAATGCTCCCCTTTCGGCGGCC 182173
Query 76953 ATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTG 76994
|| | ||| | | |||||| | ||||||||||| || |||
Sbjct 182174 ATGTCTATGACGCACTTTTGGGAAATTTCCCAAACCGTCTTG 182215
Score = 131 bits (144), Expect = 2e-25
Identities = 153/207 (74%), Gaps = 0/207 (0%)
Strand=Plus/Plus
Query 77924 TTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGA 77983
|||||| ||||| ||||| | ||| |||||||||| ||||||| |||||||||| |||
Sbjct 183487 TTCAAACTCATCGCCCCACAAATCCGCCAATCCAGGACATTCATGAGGGCACATCAGTGA 183546
Query 77984 CCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAA 78043
||| || || || | | || || ||||| || |||||||||||||| || || |||
Sbjct 183547 CCAATCTCCGTCGGCTTCAATGCGCTTCATGAATAGATCAGGTATCCAGAGGGCGTAAAA 183606
Query 78044 TAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCAT 78103
| |||||||| || | |||||| ||||| |||||||| || ||||| || |
Sbjct 183607 CAAATCTCGGGCTCGGTTTTCTTCGACGCCTGTGTTCTTTTTCGCGTCAAGAAAATCAAA 183666
Query 78104 AATATCAGAATGCCATGGTTCTAGATA 78130
|| || | ||||| ||||| | |||
Sbjct 183667 TATGTCTGCGTGCCAAGGTTCCAAATA 183693
Score = 114 bits (126), Expect = 2e-20
Identities = 186/261 (71%), Gaps = 10/261 (4%)
Strand=Plus/Plus
Query 77284 ATTTCCAATCCCAAAGATCTGAAGGTACAACATCCCAAAGATCGTATTGTAGAATTCCGT 77343
||| ||||||||| | ||| | ||| ||||| ||| | || ||||| ||||| || |
Sbjct 182652 ATTCCCAATCCCACAAATCCGTAGGCTGAACATTCCACATGTCATATTGAAGAATACCCT 182711
Query 77344 TACTAGCATATGATCCATTATATGTTTCATAAGGTCCTT-CTGTTTCAGCTAGTTCACAA 77402
||||||| ||| || | ||| || || || || || |||||| || | || |||
Sbjct 182712 TACTAGCTGGTGAGCCTTGATAAGTCTCGTATGGGCCAAACTGTTTT-GCCAAATCGCAA 182770
Query 77403 CTCGCTTCCAATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAG--ATCTTG-T 77459
|| ||| || || | ||||| || ||||| ||||| |||||||| | |||| | |
Sbjct 182771 CTGCTTTCTAACGCAGCATAATAGATGGTTTCAAAAATTTTCTTATTCAACAATCTAGCT 182830
Query 77460 GCTTCA-ATACTATCAAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAAC 77518
|||| || ||||||||||| | | | |||||| ||||| || ||||| || ||
Sbjct 182831 TCTTCGGAT----TCAAACGGATATCGCATCAAAATAAAAGCATCCGCCAATCCTTGCAC 182886
Query 77519 TCCAATACCAATAGGTCTATG 77539
||||||||||| |||| |||
Sbjct 182887 ACCAATACCAATTGGTCGATG 182907
Score = 98.7 bits (108), Expect = 1e-15
Identities = 104/137 (76%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 77123 TATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCAC 77182
|| |||||||||||| || | || | |||||| || | ||| || || | ||| ||
Sbjct 182420 TACTTGAAATTCTCCCGATAGCACACGACGAGTATAGACATTCGACGTGTACGCTTCTAC 182479
Query 77183 AGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAA 77242
||||||||||| ||||||||||| || || || ||||| ||||| || |||| ||| ||
Sbjct 182480 TGATTCATTGTTGCCCAAAATTTGCGCTGTCGATGCAGTCGGCATTGGAGCCAACAACAA 182539
Query 77243 ACTATTTCTGAGACCAT 77259
|||||| |||||||
Sbjct 182540 CGAATTTCTCAGACCAT 182556
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694643019104160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |