Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20nelsoni_20[genbank_20GCA_5F001447455.1_202015-11-24] 2,969 sequences; 47,436,005 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq2810 152 7e-32 >seq2810 Length=199988 Score = 152 bits (168), Expect = 7e-32 Identities = 167/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 75368 TTATCCAACGTGAACTGAATGGGAGAGGATGCTGGTTTTGTACGTAGATAGTACATACCA 75427 ||||||| ||||| ||||| | | ||| || || || | | ||||||||| ||| Sbjct 181994 TTATCCACGGTGAATTGAATAGCCGTCACTGCCGGCTTGGTTCTCAAATAGTACATCCCA 182053 Query 75428 GTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGA 75487 ||||| |||||| |||| |||||||||||||| ||| | ||| | |||| |||| Sbjct 182054 GTTTTCAGACCCTTCTTCCAGCCGTAGAAATGCATTGATGTCAATTTAGCATAATTCGGC 182113 Query 75488 TCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCC 75547 |||||||| |||||||||| |||||| |||||| ||||| ||||| || || || ||| Sbjct 182114 TCGGCTATGTGAATATTCAACGACTGGGATTGATCAATGAATGCTCCCCTTTCGGCGGCC 182173 Query 75548 ATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTG 75589 || | ||| | | |||||| | ||||||||||| || ||| Sbjct 182174 ATGTCTATGACGCACTTTTGGGAAATTTCCCAAACCGTCTTG 182215 Score = 120 bits (132), Expect = 4e-22 Identities = 159/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 76511 TATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACAC 76570 ||||| |||||| ||||| ||||| | ||| |||| ||||||||||||| || ||| Sbjct 183479 TATAATTTTTCAAACTCATCGCCCCACAAATCCGCCAATCCAGGACATTCATGAGGGCAC 183538 Query 76571 ATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGA 76630 |||| |||||| || || || | | || || ||||| || |||||||||||||| || Sbjct 183539 ATCAGTGACCAATCTCCGTCGGCTTCAATGCGCTTCATGAATAGATCAGGTATCCAGAGG 183598 Query 76631 GCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGG 76690 || ||| | |||||||| || |||||| ||||| |||||||| || || Sbjct 183599 GCGTAAAACAAATCTCGGGCTCGGTTTTCTTCGACGCCTGTGTTCTTTTTCGCGTCAAGA 183658 Query 76691 AACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGC 76731 || || | || || | ||||| ||||| | ||| | ||| Sbjct 183659 AAATCAAATATGTCTGCGTGCCAAGGTTCCAAATAGACCGC 183699 Score = 114 bits (126), Expect = 2e-20 Identities = 196/280 (70%), Gaps = 6/280 (2%) Strand=Plus/Plus Query 75879 ATTTCCAATCCCAAAGATCTGATGGTACAACATCCCAGAGATCGTATTGTAGAATTCCGT 75938 ||| ||||||||| | ||| | || ||||| ||| | || ||||| ||||| || | Sbjct 182652 ATTCCCAATCCCACAAATCCGTAGGCTGAACATTCCACATGTCATATTGAAGAATACCCT 182711 Query 75939 TGCTAGCATATGATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAAC 75998 | ||||| ||| || | ||| || ||||| | || || || || | ||||||| Sbjct 182712 TACTAGCTGGTGAGCCTTGATAAGTCTCGTATGGGCCAAACTGTTTTGCCAAATCGCAAC 182771 Query 75999 TCGCCTCTAACGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTAAG--ATCTTGCG- 76055 | ||||||||| | ||||| || ||||| ||||| |||||||| | |||| || Sbjct 182772 TGCTTTCTAACGCAGCATAATAGATGGTTTCAAAAATTTTCTTATTCAACAATCTAGCTT 182831 Query 76056 CTTCAAGACTATCAAAAGGATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTC 76115 |||| || | |||| ||||| | | | |||||| ||||| || | ||| || || | Sbjct 182832 CTTCG-GATT--CAAACGGATATCGCATCAAAATAAAAGCATCCGCCAATCCTTGCACAC 182888 Query 76116 CAATACCAATAGGTCTATGTCTCTTATTGGAAATTTCAGC 76155 |||||||||| |||| ||| | || || || |||| || Sbjct 182889 CAATACCAATTGGTCGATGACGTTTGTTAGACTTTTCTGC 182928 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 75721 TTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGA 75780 |||||||||||| || | || | ||||| || | ||| || || | ||| || || Sbjct 182423 TTGAAATTCTCCCGATAGCACACGACGAGTATAGACATTCGACGTGTACGCTTCTACTGA 182482 Query 75781 TTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACT 75840 ||||||||| ||||||||||| || || || ||||||||||| || |||| ||| || Sbjct 182483 TTCATTGTTGCCCAAAATTTGCGCTGTCGATGCAGTCGGCATTGGAGCCAACAACAACGA 182542 Query 75841 ATTTCTGAGACCAT 75854 |||||| ||||||| Sbjct 182543 ATTTCTCAGACCAT 182556 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712907941222080