Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20nelsoni_20[genbank_20GCA_5F001447455.1_202015-11-24]
2,969 sequences; 47,436,005 total letters
Query= NC_031038.1
Length=222832
Score E
Sequences producing significant alignments: (Bits) Value
seq2810 152 7e-32
>seq2810
Length=199988
Score = 152 bits (168), Expect = 7e-32
Identities = 167/222 (75%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 75368 TTATCCAACGTGAACTGAATGGGAGAGGATGCTGGTTTTGTACGTAGATAGTACATACCA 75427
||||||| ||||| ||||| | | ||| || || || | | ||||||||| |||
Sbjct 181994 TTATCCACGGTGAATTGAATAGCCGTCACTGCCGGCTTGGTTCTCAAATAGTACATCCCA 182053
Query 75428 GTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGA 75487
||||| |||||| |||| |||||||||||||| ||| | ||| | |||| ||||
Sbjct 182054 GTTTTCAGACCCTTCTTCCAGCCGTAGAAATGCATTGATGTCAATTTAGCATAATTCGGC 182113
Query 75488 TCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCC 75547
|||||||| |||||||||| |||||| |||||| ||||| ||||| || || || |||
Sbjct 182114 TCGGCTATGTGAATATTCAACGACTGGGATTGATCAATGAATGCTCCCCTTTCGGCGGCC 182173
Query 75548 ATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTG 75589
|| | ||| | | |||||| | ||||||||||| || |||
Sbjct 182174 ATGTCTATGACGCACTTTTGGGAAATTTCCCAAACCGTCTTG 182215
Score = 120 bits (132), Expect = 4e-22
Identities = 159/221 (72%), Gaps = 0/221 (0%)
Strand=Plus/Plus
Query 76511 TATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACAC 76570
||||| |||||| ||||| ||||| | ||| |||| ||||||||||||| || |||
Sbjct 183479 TATAATTTTTCAAACTCATCGCCCCACAAATCCGCCAATCCAGGACATTCATGAGGGCAC 183538
Query 76571 ATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGA 76630
|||| |||||| || || || | | || || ||||| || |||||||||||||| ||
Sbjct 183539 ATCAGTGACCAATCTCCGTCGGCTTCAATGCGCTTCATGAATAGATCAGGTATCCAGAGG 183598
Query 76631 GCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGG 76690
|| ||| | |||||||| || |||||| ||||| |||||||| || ||
Sbjct 183599 GCGTAAAACAAATCTCGGGCTCGGTTTTCTTCGACGCCTGTGTTCTTTTTCGCGTCAAGA 183658
Query 76691 AACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGC 76731
|| || | || || | ||||| ||||| | ||| | |||
Sbjct 183659 AAATCAAATATGTCTGCGTGCCAAGGTTCCAAATAGACCGC 183699
Score = 114 bits (126), Expect = 2e-20
Identities = 196/280 (70%), Gaps = 6/280 (2%)
Strand=Plus/Plus
Query 75879 ATTTCCAATCCCAAAGATCTGATGGTACAACATCCCAGAGATCGTATTGTAGAATTCCGT 75938
||| ||||||||| | ||| | || ||||| ||| | || ||||| ||||| || |
Sbjct 182652 ATTCCCAATCCCACAAATCCGTAGGCTGAACATTCCACATGTCATATTGAAGAATACCCT 182711
Query 75939 TGCTAGCATATGATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAAC 75998
| ||||| ||| || | ||| || ||||| | || || || || | |||||||
Sbjct 182712 TACTAGCTGGTGAGCCTTGATAAGTCTCGTATGGGCCAAACTGTTTTGCCAAATCGCAAC 182771
Query 75999 TCGCCTCTAACGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTAAG--ATCTTGCG- 76055
| ||||||||| | ||||| || ||||| ||||| |||||||| | |||| ||
Sbjct 182772 TGCTTTCTAACGCAGCATAATAGATGGTTTCAAAAATTTTCTTATTCAACAATCTAGCTT 182831
Query 76056 CTTCAAGACTATCAAAAGGATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTC 76115
|||| || | |||| ||||| | | | |||||| ||||| || | ||| || || |
Sbjct 182832 CTTCG-GATT--CAAACGGATATCGCATCAAAATAAAAGCATCCGCCAATCCTTGCACAC 182888
Query 76116 CAATACCAATAGGTCTATGTCTCTTATTGGAAATTTCAGC 76155
|||||||||| |||| ||| | || || || |||| ||
Sbjct 182889 CAATACCAATTGGTCGATGACGTTTGTTAGACTTTTCTGC 182928
Score = 98.7 bits (108), Expect = 1e-15
Identities = 102/134 (76%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 75721 TTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGA 75780
|||||||||||| || | || | ||||| || | ||| || || | ||| || ||
Sbjct 182423 TTGAAATTCTCCCGATAGCACACGACGAGTATAGACATTCGACGTGTACGCTTCTACTGA 182482
Query 75781 TTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACT 75840
||||||||| ||||||||||| || || || ||||||||||| || |||| ||| ||
Sbjct 182483 TTCATTGTTGCCCAAAATTTGCGCTGTCGATGCAGTCGGCATTGGAGCCAACAACAACGA 182542
Query 75841 ATTTCTGAGACCAT 75854
|||||| |||||||
Sbjct 182543 ATTTCTCAGACCAT 182556
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 712907941222080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |