Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20nelsoni_20[genbank_20GCA_5F001447455.1_202015-11-24]
2,969 sequences; 47,436,005 total letters
Query= NC_031465.1
Length=360610
Score E
Sequences producing significant alignments: (Bits) Value
seq2680 145 2e-29
seq1292 87.8 4e-12
>seq2680
Length=639
Score = 145 bits (160), Expect = 2e-29
Identities = 160/213 (75%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951
||||||||| ||||| |||||||| || ||||| ||||| || || | || | ||||||
Sbjct 590 GAGGACAAGGTGAAGGGTAGACTCCTTCTGGATATTGTAGTCTGCCAGGGTACGCCCATC 531
Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011
|| || || ||||| |||||||||||||||||||| | | || || ||||| ||
Sbjct 530 CTCGAGCTGCTTGCCGGCAAAGATAAGCCTCTGCTGGTCTGGTGGAATCCCCTCCTTGTC 471
Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071
|||||| || || ||| | || | | ||||||| ||||| || ||||| || || ||
Sbjct 470 TTGAATCTTGGCCTTCACATTGTCAATGGTGTCTGAGCTCTCCACCTCAAGGGTGATGGT 411
Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| || || |||||||| || || | ||||||
Sbjct 410 CTTCCCTGTAAGAGTCTTGACAAAAATCTGCAT 378
Score = 114 bits (126), Expect = 3e-20
Identities = 155/214 (72%), Gaps = 4/214 (2%)
Strand=Plus/Minus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
|| || | |||||| || || || || ||||||||||| || || | || | |||||
Sbjct 361 AGCACCAAATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCTGCCAGGGTACGGCCATCC 302
Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010
|| || ||||| ||||| |||||||||||||||||||| | | ||| || ||||| |
Sbjct 301 TCAAGCTGCTTT--CCGGCAAAGATAAGCCTCTGCTGGTCTGGTGGGATACCCTCCTTGT 244
Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070
| || ||||| || ||| | || | | ||||||| ||||| || || | || || |
Sbjct 243 CCTGGATTTTAGCCTTCACATTATCGATGGTGTCTGAGCTCTCCACCTCCAAGGTGATGG 184
Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
| || || || | ||||| || |||| ||||||
Sbjct 183 TCTTTCCGGTCAAGGTCTTGACAAAGATCTGCAT 150
>seq1292
Length=279
Score = 87.8 bits (96), Expect = 4e-12
Identities = 99/131 (76%), Gaps = 4/131 (3%)
Strand=Plus/Plus
Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951
||| || | ||| || || ||||| || || ||||||||||| || || || || || ||
Sbjct 109 GAGCACCAAATGGAGGGTTGACTCCTTCTGAATGTTGTAATCAGCCAAGGTCCTACCGTC 168
Query 151952 TTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTT 152009
|| || ||||| ||||||||||| | ||||||||| |||| | ||| ||||||||
Sbjct 169 CTCGAGCTGCTTT--CCGGCGAAGATCAACCTCTGCTGATCCGGTGGGATCCCTTCCTTA 226
Query 152010 TCTTGAATTTT 152020
|| || || ||
Sbjct 227 TCCTGGATCTT 237
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1153776908296199
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |