Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20nelsoni_20[genbank_20GCA_5F001447455.1_202015-11-24] 2,969 sequences; 47,436,005 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq2680 145 2e-29 seq1292 87.8 4e-12 >seq2680 Length=639 Score = 145 bits (160), Expect = 2e-29 Identities = 160/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||||||||| ||||| |||||||| || ||||| ||||| || || | || | |||||| Sbjct 590 GAGGACAAGGTGAAGGGTAGACTCCTTCTGGATATTGTAGTCTGCCAGGGTACGCCCATC 531 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 || || || ||||| |||||||||||||||||||| | | || || ||||| || Sbjct 530 CTCGAGCTGCTTGCCGGCAAAGATAAGCCTCTGCTGGTCTGGTGGAATCCCCTCCTTGTC 471 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 |||||| || || ||| | || | | ||||||| ||||| || ||||| || || || Sbjct 470 TTGAATCTTGGCCTTCACATTGTCAATGGTGTCTGAGCTCTCCACCTCAAGGGTGATGGT 411 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || |||||||| || || | |||||| Sbjct 410 CTTCCCTGTAAGAGTCTTGACAAAAATCTGCAT 378 Score = 114 bits (126), Expect = 3e-20 Identities = 155/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || | |||||| || || || || ||||||||||| || || | || | ||||| Sbjct 361 AGCACCAAATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCTGCCAGGGTACGGCCATCC 302 Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 || || ||||| ||||| |||||||||||||||||||| | | ||| || ||||| | Sbjct 301 TCAAGCTGCTTT--CCGGCAAAGATAAGCCTCTGCTGGTCTGGTGGGATACCCTCCTTGT 244 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070 | || ||||| || ||| | || | | ||||||| ||||| || || | || || | Sbjct 243 CCTGGATTTTAGCCTTCACATTATCGATGGTGTCTGAGCTCTCCACCTCCAAGGTGATGG 184 Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || || || | ||||| || |||| |||||| Sbjct 183 TCTTTCCGGTCAAGGTCTTGACAAAGATCTGCAT 150 >seq1292 Length=279 Score = 87.8 bits (96), Expect = 4e-12 Identities = 99/131 (76%), Gaps = 4/131 (3%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| || | ||| || || ||||| || || ||||||||||| || || || || || || Sbjct 109 GAGCACCAAATGGAGGGTTGACTCCTTCTGAATGTTGTAATCAGCCAAGGTCCTACCGTC 168 Query 151952 TTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTT 152009 || || ||||| ||||||||||| | ||||||||| |||| | ||| |||||||| Sbjct 169 CTCGAGCTGCTTT--CCGGCGAAGATCAACCTCTGCTGATCCGGTGGGATCCCTTCCTTA 226 Query 152010 TCTTGAATTTT 152020 || || || || Sbjct 227 TCCTGGATCTT 237 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153776908296199