Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20nelsoni_20[genbank_20GCA_5F001447455.1_202015-11-24] 2,969 sequences; 47,436,005 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq2680 167 5e-36 seq11 98.7 2e-15 seq378 93.3 9e-14 seq827 89.7 1e-12 seq2465 86.0 1e-11 seq1187 84.2 5e-11 >seq2680 Length=639 Score = 167 bits (184), Expect = 5e-36 Identities = 176/229 (77%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || ||||| |||| ||| | ||| ||| || |||||||||||||| || Sbjct 377 ACCACCACGAAGACGAAGCACCAAATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCTGC 318 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || ||||||||||| || || || ||||||||||| | | || ||||| || Sbjct 317 CAGGGTACGGCCATCCTCAAGCTGCTTTCCGGCAAAGATAAGCCTCTGCTGGTCTGGTGG 258 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCT-TCGA 283050 |||||||||||||| ||||| || || || || ||||||| ||||| | |||| || | Sbjct 257 GATACCCTCCTTGTCCTGGATTTTAGCCTTCACATTATCGATGGTGTCTG-AGCTCTCCA 199 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 | || | ||||| ||||| || ||||| ||||| || || |||||||| Sbjct 198 CCTCCAAGGTGATGGTCTTTCCGGTCAAGGTCTTGACAAAGATCTGCAT 150 Score = 138 bits (152), Expect = 2e-27 Identities = 170/230 (74%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 282871 AACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG 282930 |||||||||| || || || || || || | || || || ||||| |||||||| | Sbjct 606 AACCACCACGAAGACGGAGGACAAGGTGAAGGGTAGACTCCTTCTGGATATTGTAGTCTG 547 Query 282931 CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCG 282990 | || || || |||||||| || || || ||||||||||| | | || ||||| | Sbjct 546 CCAGGGTACGCCCATCCTCGAGCTGCTTGCCGGCAAAGATAAGCCTCTGCTGGTCTGGTG 487 Query 282991 GAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCT-TCG 283049 |||| |||||||||||||| ||||| || || || | || || ||||| | |||| || Sbjct 486 GAATCCCCTCCTTGTCTTGAATCTTGGCCTTCACATTGTCAATGGTGTCTG-AGCTCTCC 428 Query 283050 ACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || || ||||| ||||| || || | |||||| || || |||||||| Sbjct 427 ACCTCAAGGGTGATGGTCTTCCCTGTAAGAGTCTTGACAAAAATCTGCAT 378 Score = 131 bits (144), Expect = 4e-25 Identities = 117/147 (80%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || ||||| |||| ||| | ||| ||| || ||||||||||| || || Sbjct 149 ACCACCACGGAGACGAAGCACCAAATGAAGGGTGGATTCCTTCTGGATGTTGTAATCTGC 90 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||||||||| || || || ||||||||||||| ||| |||||||| || Sbjct 89 CAGGGTGCGGCCATCCTCAAGCTGCTTTCCGGCAAAGATCAGACGCTGTTGGTCCGGGGG 30 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGC 283018 || ||||||||||| || ||||| || Sbjct 29 GATTCCCTCCTTGTCCTGAATCTTGGC 3 >seq11 Length=460 Score = 98.7 bits (108), Expect = 2e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016 || || ||||| |||||||||||||| || ||||| || ||||| || || || || Sbjct 202 TTACCAGCAAATATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTG 143 Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076 ||||||| | || || || || || | ||| ||||| | |||||||| || || || Sbjct 142 CCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTA 83 Query 283077 AAAGTCTTAACGAATATCTGCATT 283100 | |||||||||||| || |||||| Sbjct 82 AGAGTCTTAACGAAAATTTGCATT 59 >seq378 Length=398 Score = 93.3 bits (102), Expect = 9e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 || ||||| ||||||||||| || || ||||| || ||||| || || || || || Sbjct 254 CCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCCTTATCCTGTATTTTGCCT 195 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 ||||| | || || || || || | ||| ||||| | |||||||| || || || | | Sbjct 194 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAAGA 135 Query 283080 GTCTTAACGAATATCTGCATT 283100 ||||||||||| || |||||| Sbjct 134 GTCTTAACGAAAATTTGCATT 114 >seq827 Length=57960 Score = 89.7 bits (98), Expect = 1e-12 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016 || || ||||| |||||||||||||| || ||||| ||||| || ||||| || || Sbjct 30213 TTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATTTTG 30272 Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076 |||| || | || || || || || ||| ||||| | ||| || || || || || Sbjct 30273 CCTTTCACATTTTCTATTGTATCAGATAGTTCTACTTCCAAAGTTATTGTTTTTCCAGTA 30332 Query 283077 AAAGTCTTAACGAATATCTGCATT 283100 | |||||||||||| || |||||| Sbjct 30333 AGAGTCTTAACGAAAATTTGCATT 30356 Score = 89.7 bits (98), Expect = 1e-12 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 282954 TGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATC 283013 || || || ||||| |||||||||||||| || ||||| ||||| || ||||| || Sbjct 30492 TGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATT 30551 Query 283014 TTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCC 283073 || |||| || | || || || || || ||| ||||| | ||| || || || || Sbjct 30552 TTGCCTTTCACATTTTCTATTGTATCAGATAGTTCTACTTCCAAAGTTATTGTTTTTCCA 30611 Query 283074 GTCAAAGTCTTAACGAATATCTGCATT 283100 || | |||||||||||| || |||||| Sbjct 30612 GTAAGAGTCTTAACGAAAATTTGCATT 30638 Score = 89.7 bits (98), Expect = 1e-12 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 282954 TGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATC 283013 || || || ||||| |||||||||||||| || ||||| ||||| || ||||| || Sbjct 30774 TGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATT 30833 Query 283014 TTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCC 283073 || |||| || | || || || || || | ||| ||||| | ||| || || || || Sbjct 30834 TTGCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCCA 30893 Query 283074 GTCAAAGTCTTAACGAATATCTGCATT 283100 || | ||||||||||| || |||||| Sbjct 30894 GTAAGGGTCTTAACGAAAATTTGCATT 30920 Score = 86.0 bits (94), Expect = 1e-11 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016 || || ||||| |||| ||| ||||| || ||||| ||||| || || || || || Sbjct 31745 TTACCAGCAAAAATCAGACGCTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 31804 Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076 |||| || | || || | ||| | | ||| ||||| ||||| || || || || ||| Sbjct 31805 CCTTTCACATTTTCAATTGAGTCTAAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 31864 Query 283077 AAAGTCTTAACGAATATCTGCATTTTC 283103 | ||| || || ||||||||||||||| Sbjct 31865 AGAGTTTTCACAAATATCTGCATTTTC 31891 >seq2465 Length=325902 Score = 86.0 bits (94), Expect = 1e-11 Identities = 107/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016 || || |||||||| || | ||| || ||| ||||| || ||||| || || || ||| Sbjct 17878 TTACCTGCAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAAT-TTT 17936 Query 283017 GCTTTTA-CGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGT 283075 |||||| | | ||||| ||||| || | ||| ||||| || || || || || || || Sbjct 17937 ACTTTTAACATTTTCGATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAGT 17996 Query 283076 CAAAGTCTTAACGAATATCTGCAT 283099 | ||||| |||||||||||||| Sbjct 17997 AAGTGTCTTCACGAATATCTGCAT 18020 >seq1187 Length=25466 Score = 84.2 bits (92), Expect = 5e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016 || || ||||| |||| ||||||||| || ||||| ||||| || || || || || Sbjct 20379 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 20320 Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076 | || || | || || ||||| || | || ||||| || || || || || || ||| Sbjct 20319 CCCTTCACATTTTCAATGGTGTCTGAGGGCTCCACTTCCAGTGTAATGGTTTTCCCAGTC 20260 Query 283077 AAAGTCTTAACGAATATCTGCATTTT 283102 | ||| || || |||||||||||||| Sbjct 20259 AGAGTTTTGACAAATATCTGCATTTT 20234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046699381713726