Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20nelsoni_20[genbank_20GCA_5F001447455.1_202015-11-24] 2,969 sequences; 47,436,005 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq1000 224 1e-53 >seq1000 Length=308 Score = 224 bits (248), Expect = 1e-53 Identities = 167/194 (86%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 8344 TCTCACTCTGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCG 8403 |||||||||||||||||||||||||||||||||| ||||| ||||||| |||| || | Sbjct 119 TCTCACTCTGTTGCCCAGGCTGGAGTGCAGTGGCGCGATCTTAGCTCACTACAACTTCTG 178 Query 8404 CCTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAA 8463 |||||| ||||||||| |||||||||||||||||||| |||||||||||| ||||||| Sbjct 179 CCTCCCAGGTTCAAGCAATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCGC 238 Query 8464 AAGCCACCACGCCAAGCTAATTTT--TGTATTTTTAGTAGAGAGAGGGTTTCACCATGTT 8521 ||||||| || |||||||| |||||||| ||||||||| ||||||||||||||| Sbjct 239 CCGCCACCATGC----CTAATTTTTCTGTATTTTGAGTAGAGAGGGGGTTTCACCATGTT 294 Query 8522 GGCCAGGCTGGTCT 8535 |||||| || ||| Sbjct 295 AGCCAGGATGTTCT 308 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521468646276600