Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20nelsoni_20[genbank_20GCA_5F001447455.1_202015-11-24] 2,969 sequences; 47,436,005 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq2680 113 3e-20 seq1187 82.4 5e-11 seq827 82.4 5e-11 >seq2680 Length=639 Score = 113 bits (124), Expect = 3e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||| ||||| ||| ||||| ||||||||||| || || || || | || || Sbjct 359 CACCAAATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCTGCCAGGGTACGGCCATCCTC 300 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 |||||||| ||||||||||| | | |||||| |||| || | ||| ||||| ||| Sbjct 299 AAGCTGCTTTCCGGCAAAGATAAGCCTCTGCTGGTCTGGTGGGATACCCTCCTTGTCCTG 240 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 || || ||||| | | |||||||| | | |||||||||| || || ||||| Sbjct 239 GATTTTAGCCTTCACATTATCGATGGTGTCTGAGCTCTCCACCTCCAAGGTGATGGTCTT 180 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| || | |||||| || ||||| ||||| Sbjct 179 TCCGGTCAAGGTCTTGACAAAGATCTGCAT 150 Score = 98.7 bits (108), Expect = 7e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || |||||||| || |||||| ||||| ||||| || || || ||| | || || Sbjct 586 ACAAGGTGAAGGGTAGACTCCTTCTGGATATTGTAGTCTGCCAGGGTACGCCCATCCTCG 527 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| ||||||||||| | | |||||| |||| || | || ||||| || Sbjct 526 AGCTGCTTGCCGGCAAAGATAAGCCTCTGCTGGTCTGGTGGAATCCCCTCCTTGTCTTGA 467 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||||| | | |||||||| | | |||||||| | || || ||||| Sbjct 466 ATCTTGGCCTTCACATTGTCAATGGTGTCTGAGCTCTCCACCTCAAGGGTGATGGTCTTC 407 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || || ||||| || || || ||||| Sbjct 406 CCTGTAAGAGTCTTGACAAAAATCTGCAT 378 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||| ||||| ||| ||||| |||||||||||||| || || ||| | || || Sbjct 131 CACCAAATGAAGGGTGGATTCCTTCTGGATGTTGTAATCTGCCAGGGTGCGGCCATCCTC 72 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 |||||||| ||||||||||||| |||||| || || | || | || ||||| ||| Sbjct 71 AAGCTGCTTTCCGGCAAAGATCAGACGCTGTTGGTCCGGGGGGATTCCCTCCTTGTCCTG 12 Query 44248 TATCTT 44253 ||||| Sbjct 11 AATCTT 6 >seq1187 Length=25466 Score = 82.4 bits (90), Expect = 5e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 44198 CCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGC 44257 || ||||| |||||||| |||||||||| || | ||||| || ||| ||| ||| Sbjct 22407 CCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCCTGTATTTTCCCT 22348 Query 44258 TTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGG 44317 |||| || | || || || | | |||||| |||| || || || || || |||||| Sbjct 22347 TTCACATTTTCAATTGTATCAGATGGTTCCACTTCCAATGTGATGGTTTTGCCAGTGAGG 22288 Query 44318 GTCTTCACGAAGATTTGCAT 44337 ||||| || || |||||||| Sbjct 22287 GTCTTAACAAAAATTTGCAT 22268 >seq827 Length=57960 Score = 82.4 bits (90), Expect = 5e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 44198 CCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGC 44257 || ||||| |||||||| |||||||||| || | ||||| || ||| ||| ||| Sbjct 55492 CCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCCTGTATTTTCCCT 55551 Query 44258 TTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGG 44317 |||| || | || || || | | |||||| |||| || || || || || |||||| Sbjct 55552 TTCACATTTTCAATTGTATCAGATGGTTCCACTTCCAATGTGATGGTTTTGCCAGTGAGG 55611 Query 44318 GTCTTCACGAAGATTTGCAT 44337 ||||| || || |||||||| Sbjct 55612 GTCTTAACAAAAATTTGCAT 55631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359977373859873