Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20nelsoni_20[genbank_20GCA_5F001447455.1_202015-11-24]
2,969 sequences; 47,436,005 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq2680 150 4e-31
seq1292 116 9e-21
seq2465 102 2e-16
seq1187 95.1 3e-14
seq827 95.1 3e-14
seq11 91.5 4e-13
seq378 89.7 1e-12
>seq2680
Length=639
Score = 150 bits (166), Expect = 4e-31
Identities = 157/206 (76%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| ||||| || || ||||| ||||| || || |||||||| |||||||| |||||||||
Sbjct 381 CAGATTTTTGTCAAGACTCTTACAGGGAAGACCATCACCCTTGAGGTGGAGAGCTCAGAC 440
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||| || || || || |||||||| ||||| || || || || || ||||||||
Sbjct 441 ACCATTGACAATGTGAAGGCCAAGATTCAAGACAAGGAGGGGATTCCACCAGACCAGCAG 500
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
| |||||||| ||||| || |||||||| ||||| | || || || || || || ||
Sbjct 501 AGGCTTATCTTTGCCGGCAAGCAGCTCGAGGATGGGCGTACCCTGGCAGACTACAATATC 560
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| || || || || || || |||||
Sbjct 561 CAGAAGGAGTCTACCCTTCACCTTGT 586
Score = 141 bits (156), Expect = 2e-28
Identities = 152/201 (76%), Gaps = 0/201 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || || || || || | || ||||| || |||||| | |||||||| |||||||||
Sbjct 153 CAGATCTTTGTCAAGACCTTGACCGGAAAGACCATCACCTTGGAGGTGGAGAGCTCAGAC 212
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| || || || || || |||||||| || || ||||| || ||||||||
Sbjct 213 ACCATCGATAATGTGAAGGCTAAAATCCAGGACAAGGAGGGTATCCCACCAGACCAGCAG 272
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
| |||||||| |||||||| ||||| || ||||| | || || || || || ||| ||
Sbjct 273 AGGCTTATCTTTGCCGGAAAGCAGCTTGAGGATGGCCGTACCCTGGCAGACTACAACATC 332
Query 178104 CAAAAAGAATCAACACTGCAT 178124
|| || ||||| || || |||
Sbjct 333 CAGAAGGAATCCACCCTTCAT 353
Score = 109 bits (120), Expect = 1e-18
Identities = 96/120 (80%), Gaps = 0/120 (0%)
Strand=Plus/Plus
Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064
|||||||||||||| || |||||||| |||||||| || || || ||||| ||||||||
Sbjct 6 AAGATTCAGGACAAGGAGGGAATCCCCCCGGACCAACAGCGTCTGATCTTTGCCGGAAAG 65
Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124
||||| || ||||| | || || || ||||| ||| |||| || ||||| || || |||
Sbjct 66 CAGCTTGAGGATGGCCGCACCCTGGCAGATTACAACATCCAGAAGGAATCCACCCTTCAT 125
>seq1292
Length=279
Score = 116 bits (128), Expect = 9e-21
Identities = 123/162 (76%), Gaps = 0/162 (0%)
Strand=Plus/Minus
Query 177963 CTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAA 178022
|| ||||| || ||||| || || || || |||||||| ||||| ||||| || |||
Sbjct 279 CTGGAGGTTGAGAGCTCCGATACAATTGATAACGTCAAGGCCAAGATCCAGGATAAGGAA 220
Query 178023 GGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGG 178082
|| ||||| ||||| ||||| | | |||||||||||||| |||||||| || || |||
Sbjct 219 GGGATCCCACCGGATCAGCAGAGGTTGATCTTCGCCGGAAAGCAGCTCGAGGACGGTAGG 160
Query 178083 ACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124
|| | || ||||| ||| | || || || ||||| || |||
Sbjct 159 ACCTTGGCTGATTACAACATTCAGAAGGAGTCAACCCTCCAT 118
>seq2465
Length=325902
Score = 102 bits (112), Expect = 2e-16
Identities = 113/151 (75%), Gaps = 0/151 (0%)
Strand=Plus/Minus
Query 177913 TTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGG 177972
|| |||| | || || |||||||| || || || |||||||| || || || || || |
Sbjct 18028 TTCAAATTATGCAGATATTCGTGAAGACACTTACTGGAAAAACTATAACACTAGAAGTTG 17969
Query 177973 AAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTC 178032
|| |||||||||||||| || || ||| || |||||||| || ||||| || ||||
Sbjct 17968 AACCATCAGACACCATCGAAAATGTTAAAAGTAAAATTCAGGATAAGGAAGGCATTCCTC 17909
Query 178033 CGGACCAGCAACGACTTATCTTCGCCGGAAA 178063
| || |||||| || | ||||| || || ||
Sbjct 17908 CTGATCAGCAAAGATTAATCTTTGCAGGTAA 17878
>seq1187
Length=25466
Score = 95.1 bits (104), Expect = 3e-14
Identities = 103/137 (75%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || || |||||||| | |||||||||||||| || || || || || |||||
Sbjct 20572 CAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCAGAT 20631
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || || || || ||| |||||||| ||||||||||| ||||| ||||| || ||
Sbjct 20632 ACAATTGAAAATGTAAAAAGCAAGATTCAAGACAAAGAAGGCATCCCACCGGATCAACAG 20691
Query 178044 CGACTTATCTTCGCCGG 178060
|| ||||| || || ||
Sbjct 20692 CGGCTTATTTTTGCTGG 20708
Score = 87.8 bits (96), Expect = 4e-12
Identities = 109/149 (73%), Gaps = 3/149 (2%)
Strand=Plus/Plus
Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974
||||||| | || || || |||||||| || || ||||| || || || || |||||
Sbjct 20234 AAAATGC---AGATATTTGTCAAAACTCTGACTGGGAAAACCATTACACTGGAAGTGGAG 20290
Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034
|||||||||||| || || || || || |||||||| ||||| ||||| || ||
Sbjct 20291 CCCTCAGACACCATTGAAAATGTGAAGGGTAAAATTCAGGATAAAGAGGGAATTCCACCC 20350
Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAA 178063
|| || ||||| || || || || || ||
Sbjct 20351 GATCAACAACGTCTGATTTTTGCTGGTAA 20379
Score = 86.0 bits (94), Expect = 2e-11
Identities = 101/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|||||||| || || || ||||| || ||||| ||||| | || |||||| || ||
Sbjct 20854 CAAATTTTTGTTAAGACCCTCACTGGCAAAACCATCACATTGGAAGTGGAACCATCTGAT 20913
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || || || || ||| || || ||||| ||||||||||| || || || ||||||
Sbjct 20914 ACAATTGAAAATGTGAAAGGGAAAATACAGGATAAAGAAGGAATTCCACCAGATCAGCAA 20973
Query 178044 CGACTTATCTTCGCCGG 178060
|| || || || || ||
Sbjct 20974 CGTCTGATTTTTGCTGG 20990
Score = 86.0 bits (94), Expect = 2e-11
Identities = 101/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|||||||| || || || ||||| || ||||| ||||| | || |||||| || ||
Sbjct 21137 CAAATTTTTGTTAAGACCCTCACTGGCAAAACCATCACATTGGAAGTGGAACCATCTGAT 21196
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || || || || ||| || || ||||| ||||||||||| || || || ||||||
Sbjct 21197 ACAATTGAAAATGTGAAAGGGAAAATACAGGATAAAGAAGGAATTCCACCAGATCAGCAA 21256
Query 178044 CGACTTATCTTCGCCGG 178060
|| || || || || ||
Sbjct 21257 CGTCTGATTTTTGCTGG 21273
Score = 86.0 bits (94), Expect = 2e-11
Identities = 101/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|||||||| || || || ||||| || ||||| ||||| | || |||||| || ||
Sbjct 21420 CAAATTTTTGTTAAGACCCTCACTGGCAAAACCATCACATTGGAAGTGGAACCATCTGAT 21479
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || || || || ||| || || ||||| ||||||||||| || || || ||||||
Sbjct 21480 ACAATTGAAAATGTGAAAGGGAAAATACAGGATAAAGAAGGAATTCCACCAGATCAGCAA 21539
Query 178044 CGACTTATCTTCGCCGG 178060
|| || || || || ||
Sbjct 21540 CGTCTGATTTTTGCTGG 21556
Score = 86.0 bits (94), Expect = 2e-11
Identities = 101/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||||||||| || ||||| || |||||||| || || | || || ||| || ||
Sbjct 21988 CAAATTTTCGTTAAGACTCTTACTGGAAAAACAATAACATTGGAAGTAGAACCATCTGAT 22047
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || ||||| || ||| || || ||||| || |||||||| || || || ||||||
Sbjct 22048 ACAATAGAGAATGTAAAAGGCAAAATACAGGATAAGGAAGGAATTCCACCAGATCAGCAA 22107
Query 178044 CGACTTATCTTCGCCGG 178060
|| || || || || ||
Sbjct 22108 CGTCTGATTTTTGCTGG 22124
>seq827
Length=57960
Score = 95.1 bits (104), Expect = 3e-14
Identities = 103/137 (75%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || || |||||||| | |||||||||||||| || || || || || |||||
Sbjct 31552 CAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCATCAGAT 31493
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || || || || ||| |||||||| ||||||||||| ||||| ||||| || ||
Sbjct 31492 ACAATTGAAAATGTAAAAAGCAAGATTCAAGACAAAGAAGGCATCCCACCGGATCAACAG 31433
Query 178044 CGACTTATCTTCGCCGG 178060
|| ||||| || || ||
Sbjct 31432 CGGCTTATTTTTGCTGG 31416
>seq11
Length=460
Score = 91.5 bits (100), Expect = 4e-13
Identities = 104/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||||||||| || ||||| || || |||||||||||| | || || ||| || ||
Sbjct 63 CAAATTTTCGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATCTGAT 122
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || ||||| || ||| || || ||||| || |||||||| || ||||| || |||
Sbjct 123 ACAATAGAGAATGTAAAAGGCAAAATACAGGATAAGGAAGGAATTCCACCGGATCAACAA 182
Query 178044 CGACTTATCTTCGCCGGAAA 178063
|| | || || || || ||
Sbjct 183 CGTTTGATATTTGCTGGTAA 202
>seq378
Length=398
Score = 89.7 bits (98), Expect = 1e-12
Identities = 93/122 (76%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||||||||| || ||||| || || |||||||||||| | || || ||| || ||
Sbjct 118 CAAATTTTCGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATCTGAT 177
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || ||||| || ||| || || ||||| || |||||||| || || || ||||||
Sbjct 178 ACAATAGAGAATGTAAAAGGCAAAATACAGGATAAGGAAGGAATTCCACCAGATCAGCAA 237
Query 178044 CG 178045
||
Sbjct 238 CG 239
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203685409688986
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |