Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20nelsoni_20[genbank_20GCA_5F001447455.1_202015-11-24] 2,969 sequences; 47,436,005 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq2680 104 2e-17 seq1292 86.0 6e-12 >seq2680 Length=639 Score = 104 bits (114), Expect = 2e-17 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||||| ||| || ||| |||||||| ||||| || || | Sbjct 148 CCACCACGGAGACGAAGCACCAAATGAAGGGTGGATTCCTTCTGGATGTTGTAATCTGCC 89 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || || |||||||| ||||| || ||||| ||||||||||||| ||| Sbjct 88 AGGGTGCGGCCATCCTCAAGCTGCTTTCCGGCAAAGATCAGACGCTGTTGGTCCGGGGGG 29 Query 41756 ACGCTCTCCTTGTCC 41770 | | |||||||||| Sbjct 28 ATTCCCTCCTTGTCC 14 Score = 104 bits (114), Expect = 2e-17 Identities = 165/232 (71%), Gaps = 10/232 (4%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||||| ||| || ||| |||||||| ||||| ||||| | Sbjct 376 CCACCACGAAGACGAAGCACCAAATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCTGCC 317 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || | || || |||||||| ||||| || || || | ||| ||||| | || Sbjct 316 AGGGTACGGCCATCCTCAAGCTGCTTTCCGGCAAAGATAAGCCTCTGCTGGTCTGGTGGG 257 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCA-ACGA-CGACACAGTGTC---GCTCGACT 41810 | | |||||||||| |||||| ||||| | | ||| ||||| |||| | Sbjct 256 ATACCCTCCTTGTCCTGGATTTTAGCCTTCACATTATCGATG--GTGTCTGAGCTC---T 202 Query 41811 CCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||||||| || || || || || |||| ||||| || || |||||||| Sbjct 201 CCACCTCCAAGGTGATGGTCTTTCCGGTCAAGGTCTTGACAAAGATCTGCAT 150 Score = 100 bits (110), Expect = 3e-16 Identities = 163/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || || || || || ||||||||| || || ||||| | Sbjct 604 CCACCACGAAGACGGAGGACAAGGTGAAGGGTAGACTCCTTCTGGATATTGTAGTCTGCC 545 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| ||| | || ||||||||||||||||| || || || | ||| ||||| | ||| Sbjct 544 AGGGTACGCCCATCCTCGAGCTGCTTGCCGGCAAAGATAAGCCTCTGCTGGTCTGGTGGA 485 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACTC 41811 | | |||||||| | ||| | || || | || | | | ||||| ||| ||| Sbjct 484 ATCCCCTCCTTGT-CTTGAATCTTGGCCTTCACATTGTCAATGGTGTCTGAGCT---CTC 429 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||||| | || || || || || || || ||||| || ||||||||||| Sbjct 428 CACCTCAAGGGTGATGGTCTTCCCTGTAAGAGTCTTGACAAAAATCTGCAT 378 >seq1292 Length=279 Score = 86.0 bits (94), Expect = 6e-12 Identities = 107/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| ||||| | ||||| ||| || || ||||||||||||||| || || | Sbjct 95 CCACCGCGAAGACGGAGCACCAAATGGAGGGTTGACTCCTTCTGAATGTTGTAATCAGCC 154 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCC-GCGGG 41754 | ||| | |||| ||||||||||| |||||||| |||| | ||| || ||| | ||| Sbjct 155 AAGGTCCTACCGTCCTCGAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGATCCGGTGGG 214 Query 41755 AACGCTCTCCTTGTCCATGATTTT 41778 | | || ||||| ||| ||| || Sbjct 215 ATCCCT-TCCTTATCCTGGATCTT 237 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462286842742800