Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20nelsoni_20[genbank_20GCA_5F001447455.1_202015-11-24]
2,969 sequences; 47,436,005 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq2680 104 2e-17
seq1292 86.0 6e-12
>seq2680
Length=639
Score = 104 bits (114), Expect = 2e-17
Identities = 104/135 (77%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| | ||||| ||| || ||| |||||||| ||||| || || |
Sbjct 148 CCACCACGGAGACGAAGCACCAAATGAAGGGTGGATTCCTTCTGGATGTTGTAATCTGCC 89
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|||||||| | || || |||||||| ||||| || ||||| ||||||||||||| |||
Sbjct 88 AGGGTGCGGCCATCCTCAAGCTGCTTTCCGGCAAAGATCAGACGCTGTTGGTCCGGGGGG 29
Query 41756 ACGCTCTCCTTGTCC 41770
| | ||||||||||
Sbjct 28 ATTCCCTCCTTGTCC 14
Score = 104 bits (114), Expect = 2e-17
Identities = 165/232 (71%), Gaps = 10/232 (4%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| | ||||| ||| || ||| |||||||| ||||| ||||| |
Sbjct 376 CCACCACGAAGACGAAGCACCAAATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCTGCC 317
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
||||| || | || || |||||||| ||||| || || || | ||| ||||| | ||
Sbjct 316 AGGGTACGGCCATCCTCAAGCTGCTTTCCGGCAAAGATAAGCCTCTGCTGGTCTGGTGGG 257
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCA-ACGA-CGACACAGTGTC---GCTCGACT 41810
| | |||||||||| |||||| ||||| | | ||| ||||| |||| |
Sbjct 256 ATACCCTCCTTGTCCTGGATTTTAGCCTTCACATTATCGATG--GTGTCTGAGCTC---T 202
Query 41811 CCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
||||||||| || || || || || |||| ||||| || || ||||||||
Sbjct 201 CCACCTCCAAGGTGATGGTCTTTCCGGTCAAGGTCTTGACAAAGATCTGCAT 150
Score = 100 bits (110), Expect = 3e-16
Identities = 163/231 (71%), Gaps = 8/231 (3%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| | || || || || || ||||||||| || || ||||| |
Sbjct 604 CCACCACGAAGACGGAGGACAAGGTGAAGGGTAGACTCCTTCTGGATATTGTAGTCTGCC 545
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
||||| ||| | || ||||||||||||||||| || || || | ||| ||||| | |||
Sbjct 544 AGGGTACGCCCATCCTCGAGCTGCTTGCCGGCAAAGATAAGCCTCTGCTGGTCTGGTGGA 485
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACTC 41811
| | |||||||| | ||| | || || | || | | | ||||| ||| |||
Sbjct 484 ATCCCCTCCTTGT-CTTGAATCTTGGCCTTCACATTGTCAATGGTGTCTGAGCT---CTC 429
Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|||||| | || || || || || || || ||||| || |||||||||||
Sbjct 428 CACCTCAAGGGTGATGGTCTTCCCTGTAAGAGTCTTGACAAAAATCTGCAT 378
>seq1292
Length=279
Score = 86.0 bits (94), Expect = 6e-12
Identities = 107/144 (74%), Gaps = 2/144 (1%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| ||||| ||||| | ||||| ||| || || ||||||||||||||| || || |
Sbjct 95 CCACCGCGAAGACGGAGCACCAAATGGAGGGTTGACTCCTTCTGAATGTTGTAATCAGCC 154
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCC-GCGGG 41754
| ||| | |||| ||||||||||| |||||||| |||| | ||| || ||| | |||
Sbjct 155 AAGGTCCTACCGTCCTCGAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGATCCGGTGGG 214
Query 41755 AACGCTCTCCTTGTCCATGATTTT 41778
| | || ||||| ||| ||| ||
Sbjct 215 ATCCCT-TCCTTATCCTGGATCTT 237
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462286842742800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |