Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20papuae_20[genbank_20GCA_5F001447755.1_202015-11-24]
2,542 sequences; 46,844,510 total letters
Query= NC_000852.5
Length=330611
Score E
Sequences producing significant alignments: (Bits) Value
seq1825 86.0 1e-11
>seq1825
Length=902300
Score = 86.0 bits (94), Expect = 1e-11
Identities = 184/271 (68%), Gaps = 8/271 (3%)
Strand=Plus/Minus
Query 281807 CGGCAACAACCAGTTAATGTTATTGCTCCCGACGTAATCCTGAGCCAGGTTGACGATTGT 281866
||||| ||| ||| ||||||||||| || ||| ||| ||||||| || | || ||
Sbjct 349133 CGGCAGCAATATGTTGATGTTATTGCTGCCAACGAAATTATGAGCCAAATTTATAATGGT 349074
Query 281867 CCCCTGAAGCGATACCTCACCGTGGTGATAGGCGCTGTGTTCGGCAACATAACCACTGAA 281926
| | || || || || ||||| || || ||||| ||||| ||||| |
Sbjct 349073 GCTCATCAGACTGACTTCGCCATGGTGGTAAGCTGAATGTTCAGCAACGGAACCAGCAAG 349014
Query 281927 CTGTGCTACCTTCACGTCTGATGTCAAGTTGCGTTTGAAAGCGCAA---TATAATACTTT 281983
||| || |||||||| ||| | | |||||| |||||| ||| | || |||||
Sbjct 349013 CTGAGCGACCTTCACTTCTCGTTTATCGTTGCGCTTGAAA---CAAGTGAACAAAACTTT 348957
Query 281984 TCGTTGAGAAGGCTTGAAACCATCAACGACAGACGGAATGCTGCGTTCCAGGT-CATACC 282042
||||| |||||| || |||||||| | || |||||||| || || | |||
Sbjct 348956 ACGTTGTCCAGGCTTCAAGCCATCAACCATCGAAGGAATGCTACGCTCGTTATCCATGTT 348897
Query 282043 GCGAGAACAAAATAAGTTCCTTGTCAATGAA 282073
|| ||||||||| | || ||||| |||||
Sbjct 348896 GC-TGAACAAAATCAACTCTTTGTCGATGAA 348867
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1057789547333460
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |