Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20papuae_20[genbank_20GCA_5F001447755.1_202015-11-24] 2,542 sequences; 46,844,510 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq1825 86.0 1e-11 >seq1825 Length=902300 Score = 86.0 bits (94), Expect = 1e-11 Identities = 184/271 (68%), Gaps = 8/271 (3%) Strand=Plus/Minus Query 281807 CGGCAACAACCAGTTAATGTTATTGCTCCCGACGTAATCCTGAGCCAGGTTGACGATTGT 281866 ||||| ||| ||| ||||||||||| || ||| ||| ||||||| || | || || Sbjct 349133 CGGCAGCAATATGTTGATGTTATTGCTGCCAACGAAATTATGAGCCAAATTTATAATGGT 349074 Query 281867 CCCCTGAAGCGATACCTCACCGTGGTGATAGGCGCTGTGTTCGGCAACATAACCACTGAA 281926 | | || || || || ||||| || || ||||| ||||| ||||| | Sbjct 349073 GCTCATCAGACTGACTTCGCCATGGTGGTAAGCTGAATGTTCAGCAACGGAACCAGCAAG 349014 Query 281927 CTGTGCTACCTTCACGTCTGATGTCAAGTTGCGTTTGAAAGCGCAA---TATAATACTTT 281983 ||| || |||||||| ||| | | |||||| |||||| ||| | || ||||| Sbjct 349013 CTGAGCGACCTTCACTTCTCGTTTATCGTTGCGCTTGAAA---CAAGTGAACAAAACTTT 348957 Query 281984 TCGTTGAGAAGGCTTGAAACCATCAACGACAGACGGAATGCTGCGTTCCAGGT-CATACC 282042 ||||| |||||| || |||||||| | || |||||||| || || | ||| Sbjct 348956 ACGTTGTCCAGGCTTCAAGCCATCAACCATCGAAGGAATGCTACGCTCGTTATCCATGTT 348897 Query 282043 GCGAGAACAAAATAAGTTCCTTGTCAATGAA 282073 || ||||||||| | || ||||| ||||| Sbjct 348896 GC-TGAACAAAATCAACTCTTTGTCGATGAA 348867 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057789547333460